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Description of Statistical Computation

Author's title

Author*Unverified author*
R Software Modulerwasp_hierarchicalclustering.wasp
Title produced by softwareHierarchical Clustering
Date of computationMon, 16 Nov 2015 17:17:22 +0000
Cite this page as followsStatistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2015/Nov/16/t14476942640affxteroqssyk0.htm/, Retrieved Wed, 15 May 2024 08:43:25 +0000
Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=283386, Retrieved Wed, 15 May 2024 08:43:25 +0000
QR Codes:

Original text written by user:
IsPrivate?No (this computation is public)
User-defined keywords
Estimated Impact144

Tree of Dependent Computations

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)
-     [Hierarchical Clustering] [ATRIBUTOS BIOSIFI...] [2015-11-16 15:50:55] [74be16979710d4c4e7c6647856088456]
-    D    [Hierarchical Clustering] [PROMEDIO ATRIBUTOS] [2015-11-16 17:17:22] [d41d8cd98f00b204e9800998ecf8427e] [Current]
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Dataset

Dataseries X:
Download CSV
Histogram
Boxplots 
0.31
0.57
0.52
0.47
0.67
0.62
0.74
0.71
0.79
0.66
0.74
0.65
0.55
0.45
0.32
0.35
0.32
0.39
0.40
0.36
0.32
0.31
0.22
0.37
0.21
0.19
0.19
0.17
0.19
0.18
0.32
0.38
0.44
0.42
0.43
0.46
0.46
0.53
0.51
0.51
0.50
0.59
0.59
0.60
0.60
0.60
0.64
0.76
0.77
0.80
0.95

Tables (Output of Computation)





Summary of computational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time2 seconds
R Server'Gertrude Mary Cox' @ cox.wessa.net

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 2 seconds \tabularnewline
R Server & 'Gertrude Mary Cox' @ cox.wessa.net \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=283386&T=0

[TABLE]
[ROW][C]Summary of computational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]2 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'Gertrude Mary Cox' @ cox.wessa.net[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=283386&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=283386&T=0

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time2 seconds
R Server'Gertrude Mary Cox' @ cox.wessa.net






Summary of Dendrogram
LabelHeight
10
20
30
40
50
60
70
80
90
100
110
120
130.00999999999999998
140.01
150.01
160.01
170.01
180.01
190.01
200.01
210.01
220.01
230.01
240.01
250.0133333333333333
260.0133333333333333
270.0199999999999999
280.024
290.0266666666666667
300.03
310.03
320.03
330.03
340.0326666666666667
350.036
360.04
370.05
380.0566666666666667
390.0680952380952381
400.07
410.09
420.118571428571429
430.256666666666667
440.278333333333333
450.302571428571429
460.306428571428571
471.09416666666667
481.12833333333333
491.8122311827957
504.90389626818469

\begin{tabular}{lllllllll}
\hline
Summary of Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0 \tabularnewline
2 & 0 \tabularnewline
3 & 0 \tabularnewline
4 & 0 \tabularnewline
5 & 0 \tabularnewline
6 & 0 \tabularnewline
7 & 0 \tabularnewline
8 & 0 \tabularnewline
9 & 0 \tabularnewline
10 & 0 \tabularnewline
11 & 0 \tabularnewline
12 & 0 \tabularnewline
13 & 0.00999999999999998 \tabularnewline
14 & 0.01 \tabularnewline
15 & 0.01 \tabularnewline
16 & 0.01 \tabularnewline
17 & 0.01 \tabularnewline
18 & 0.01 \tabularnewline
19 & 0.01 \tabularnewline
20 & 0.01 \tabularnewline
21 & 0.01 \tabularnewline
22 & 0.01 \tabularnewline
23 & 0.01 \tabularnewline
24 & 0.01 \tabularnewline
25 & 0.0133333333333333 \tabularnewline
26 & 0.0133333333333333 \tabularnewline
27 & 0.0199999999999999 \tabularnewline
28 & 0.024 \tabularnewline
29 & 0.0266666666666667 \tabularnewline
30 & 0.03 \tabularnewline
31 & 0.03 \tabularnewline
32 & 0.03 \tabularnewline
33 & 0.03 \tabularnewline
34 & 0.0326666666666667 \tabularnewline
35 & 0.036 \tabularnewline
36 & 0.04 \tabularnewline
37 & 0.05 \tabularnewline
38 & 0.0566666666666667 \tabularnewline
39 & 0.0680952380952381 \tabularnewline
40 & 0.07 \tabularnewline
41 & 0.09 \tabularnewline
42 & 0.118571428571429 \tabularnewline
43 & 0.256666666666667 \tabularnewline
44 & 0.278333333333333 \tabularnewline
45 & 0.302571428571429 \tabularnewline
46 & 0.306428571428571 \tabularnewline
47 & 1.09416666666667 \tabularnewline
48 & 1.12833333333333 \tabularnewline
49 & 1.8122311827957 \tabularnewline
50 & 4.90389626818469 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=283386&T=1

[TABLE]
[ROW][C]Summary of Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0[/C][/ROW]
[ROW][C]2[/C][C]0[/C][/ROW]
[ROW][C]3[/C][C]0[/C][/ROW]
[ROW][C]4[/C][C]0[/C][/ROW]
[ROW][C]5[/C][C]0[/C][/ROW]
[ROW][C]6[/C][C]0[/C][/ROW]
[ROW][C]7[/C][C]0[/C][/ROW]
[ROW][C]8[/C][C]0[/C][/ROW]
[ROW][C]9[/C][C]0[/C][/ROW]
[ROW][C]10[/C][C]0[/C][/ROW]
[ROW][C]11[/C][C]0[/C][/ROW]
[ROW][C]12[/C][C]0[/C][/ROW]
[ROW][C]13[/C][C]0.00999999999999998[/C][/ROW]
[ROW][C]14[/C][C]0.01[/C][/ROW]
[ROW][C]15[/C][C]0.01[/C][/ROW]
[ROW][C]16[/C][C]0.01[/C][/ROW]
[ROW][C]17[/C][C]0.01[/C][/ROW]
[ROW][C]18[/C][C]0.01[/C][/ROW]
[ROW][C]19[/C][C]0.01[/C][/ROW]
[ROW][C]20[/C][C]0.01[/C][/ROW]
[ROW][C]21[/C][C]0.01[/C][/ROW]
[ROW][C]22[/C][C]0.01[/C][/ROW]
[ROW][C]23[/C][C]0.01[/C][/ROW]
[ROW][C]24[/C][C]0.01[/C][/ROW]
[ROW][C]25[/C][C]0.0133333333333333[/C][/ROW]
[ROW][C]26[/C][C]0.0133333333333333[/C][/ROW]
[ROW][C]27[/C][C]0.0199999999999999[/C][/ROW]
[ROW][C]28[/C][C]0.024[/C][/ROW]
[ROW][C]29[/C][C]0.0266666666666667[/C][/ROW]
[ROW][C]30[/C][C]0.03[/C][/ROW]
[ROW][C]31[/C][C]0.03[/C][/ROW]
[ROW][C]32[/C][C]0.03[/C][/ROW]
[ROW][C]33[/C][C]0.03[/C][/ROW]
[ROW][C]34[/C][C]0.0326666666666667[/C][/ROW]
[ROW][C]35[/C][C]0.036[/C][/ROW]
[ROW][C]36[/C][C]0.04[/C][/ROW]
[ROW][C]37[/C][C]0.05[/C][/ROW]
[ROW][C]38[/C][C]0.0566666666666667[/C][/ROW]
[ROW][C]39[/C][C]0.0680952380952381[/C][/ROW]
[ROW][C]40[/C][C]0.07[/C][/ROW]
[ROW][C]41[/C][C]0.09[/C][/ROW]
[ROW][C]42[/C][C]0.118571428571429[/C][/ROW]
[ROW][C]43[/C][C]0.256666666666667[/C][/ROW]
[ROW][C]44[/C][C]0.278333333333333[/C][/ROW]
[ROW][C]45[/C][C]0.302571428571429[/C][/ROW]
[ROW][C]46[/C][C]0.306428571428571[/C][/ROW]
[ROW][C]47[/C][C]1.09416666666667[/C][/ROW]
[ROW][C]48[/C][C]1.12833333333333[/C][/ROW]
[ROW][C]49[/C][C]1.8122311827957[/C][/ROW]
[ROW][C]50[/C][C]4.90389626818469[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=283386&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=283386&T=1

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of Dendrogram
LabelHeight
10
20
30
40
50
60
70
80
90
100
110
120
130.00999999999999998
140.01
150.01
160.01
170.01
180.01
190.01
200.01
210.01
220.01
230.01
240.01
250.0133333333333333
260.0133333333333333
270.0199999999999999
280.024
290.0266666666666667
300.03
310.03
320.03
330.03
340.0326666666666667
350.036
360.04
370.05
380.0566666666666667
390.0680952380952381
400.07
410.09
420.118571428571429
430.256666666666667
440.278333333333333
450.302571428571429
460.306428571428571
471.09416666666667
481.12833333333333
491.8122311827957
504.90389626818469






Summary of Cut Dendrogram
LabelHeight
10.0183333333333333
20.0183333333333333
30.02
40.024
50.025
60.03
70.031
80.046
90.0479999999999999
100.0647142857142858
110.065
120.0823333333333334
130.101333333333333
140.112619047619048
150.249285714285714
160.354121212121212
170.414444444444444
180.921345454545454
191.81137833800187

\begin{tabular}{lllllllll}
\hline
Summary of Cut Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0.0183333333333333 \tabularnewline
2 & 0.0183333333333333 \tabularnewline
3 & 0.02 \tabularnewline
4 & 0.024 \tabularnewline
5 & 0.025 \tabularnewline
6 & 0.03 \tabularnewline
7 & 0.031 \tabularnewline
8 & 0.046 \tabularnewline
9 & 0.0479999999999999 \tabularnewline
10 & 0.0647142857142858 \tabularnewline
11 & 0.065 \tabularnewline
12 & 0.0823333333333334 \tabularnewline
13 & 0.101333333333333 \tabularnewline
14 & 0.112619047619048 \tabularnewline
15 & 0.249285714285714 \tabularnewline
16 & 0.354121212121212 \tabularnewline
17 & 0.414444444444444 \tabularnewline
18 & 0.921345454545454 \tabularnewline
19 & 1.81137833800187 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=283386&T=2

[TABLE]
[ROW][C]Summary of Cut Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0.0183333333333333[/C][/ROW]
[ROW][C]2[/C][C]0.0183333333333333[/C][/ROW]
[ROW][C]3[/C][C]0.02[/C][/ROW]
[ROW][C]4[/C][C]0.024[/C][/ROW]
[ROW][C]5[/C][C]0.025[/C][/ROW]
[ROW][C]6[/C][C]0.03[/C][/ROW]
[ROW][C]7[/C][C]0.031[/C][/ROW]
[ROW][C]8[/C][C]0.046[/C][/ROW]
[ROW][C]9[/C][C]0.0479999999999999[/C][/ROW]
[ROW][C]10[/C][C]0.0647142857142858[/C][/ROW]
[ROW][C]11[/C][C]0.065[/C][/ROW]
[ROW][C]12[/C][C]0.0823333333333334[/C][/ROW]
[ROW][C]13[/C][C]0.101333333333333[/C][/ROW]
[ROW][C]14[/C][C]0.112619047619048[/C][/ROW]
[ROW][C]15[/C][C]0.249285714285714[/C][/ROW]
[ROW][C]16[/C][C]0.354121212121212[/C][/ROW]
[ROW][C]17[/C][C]0.414444444444444[/C][/ROW]
[ROW][C]18[/C][C]0.921345454545454[/C][/ROW]
[ROW][C]19[/C][C]1.81137833800187[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=283386&T=2

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=283386&T=2

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of Cut Dendrogram
LabelHeight
10.0183333333333333
20.0183333333333333
30.02
40.024
50.025
60.03
70.031
80.046
90.0479999999999999
100.0647142857142858
110.065
120.0823333333333334
130.101333333333333
140.112619047619048
150.249285714285714
160.354121212121212
170.414444444444444
180.921345454545454
191.81137833800187


Figures (Output of Computation)

Input Parameters & R Code

Parameters (Session):
par1 = ward ; par2 = 20 ; par3 = FALSE ; par4 = FALSE ;
Parameters (R input):
par1 = ward ; par2 = 20 ; par3 = FALSE ; par4 = FALSE ;
R code (references can be found in the software module):
par4 <- 'FALSE'
par3 <- 'FALSE'
par2 <- '20'
par1 <- 'ward'
par3 <- as.logical(par3)
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}