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Description of Statistical Computation

Author's title

Author*Unverified author*
R Software Modulerwasp_hierarchicalclustering.wasp
Title produced by softwareHierarchical Clustering
Date of computationMon, 16 Nov 2015 17:10:01 +0000
Cite this page as followsStatistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2015/Nov/16/t1447693831k7k6rwgrd2ks5dv.htm/, Retrieved Wed, 15 May 2024 01:29:57 +0000
Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=283382, Retrieved Wed, 15 May 2024 01:29:57 +0000
QR Codes:

Original text written by user:
IsPrivate?No (this computation is public)
User-defined keywords
Estimated Impact112

Tree of Dependent Computations

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)
-     [Hierarchical Clustering] [ATRIBUTOS BIOSIFI...] [2015-11-16 15:50:55] [74be16979710d4c4e7c6647856088456]
-    D    [Hierarchical Clustering] [ATRIBUTOS ESTETIC...] [2015-11-16 17:10:01] [d41d8cd98f00b204e9800998ecf8427e] [Current]
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Dataset

Dataseries X:
Download CSV
Histogram
Boxplots 
0.36
0.67
0.58
0.55
0.80
0.80
0.80
0.80
0.55
0.64
0.89
0.50
0.58
0.55
0.39
0.39
0.36
0.36
0.44
0.36
0.19
0.36
0.36
0.44
0.28
0.22
0.36
0.36
0.36
0.19
0.36
0.36
0.36
0.36
0.36
0.44
0.44
0.55
0.44
0.33
0.39
0.44
0.55
0.55
0.64
0.64
0.44
0.64
0.80
0.80
1.00

Tables (Output of Computation)





Summary of computational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time2 seconds
R Server'Gertrude Mary Cox' @ cox.wessa.net

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 2 seconds \tabularnewline
R Server & 'Gertrude Mary Cox' @ cox.wessa.net \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=283382&T=0

[TABLE]
[ROW][C]Summary of computational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]2 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'Gertrude Mary Cox' @ cox.wessa.net[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=283382&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=283382&T=0

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Inputview raw input (R code)
Raw Outputview raw output of R engine
Computing time2 seconds
R Server'Gertrude Mary Cox' @ cox.wessa.net






Summary of Dendrogram
LabelHeight
10
20
30
40
50
60
70
80
90
100
110
120
130
140
150
160
170
180
190
200
210
220
230
240
250
260
270
280
290
300
310
320
330
340
350
360
370.04
380.048
390.05
400.0857142857142858
410.0965079365079363
420.11
430.148235294117647
440.155448916408669
450.3525
460.514063492063492
470.734008097165992
480.824031830238727
491.99321428571429
505.20200135226504

\begin{tabular}{lllllllll}
\hline
Summary of Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0 \tabularnewline
2 & 0 \tabularnewline
3 & 0 \tabularnewline
4 & 0 \tabularnewline
5 & 0 \tabularnewline
6 & 0 \tabularnewline
7 & 0 \tabularnewline
8 & 0 \tabularnewline
9 & 0 \tabularnewline
10 & 0 \tabularnewline
11 & 0 \tabularnewline
12 & 0 \tabularnewline
13 & 0 \tabularnewline
14 & 0 \tabularnewline
15 & 0 \tabularnewline
16 & 0 \tabularnewline
17 & 0 \tabularnewline
18 & 0 \tabularnewline
19 & 0 \tabularnewline
20 & 0 \tabularnewline
21 & 0 \tabularnewline
22 & 0 \tabularnewline
23 & 0 \tabularnewline
24 & 0 \tabularnewline
25 & 0 \tabularnewline
26 & 0 \tabularnewline
27 & 0 \tabularnewline
28 & 0 \tabularnewline
29 & 0 \tabularnewline
30 & 0 \tabularnewline
31 & 0 \tabularnewline
32 & 0 \tabularnewline
33 & 0 \tabularnewline
34 & 0 \tabularnewline
35 & 0 \tabularnewline
36 & 0 \tabularnewline
37 & 0.04 \tabularnewline
38 & 0.048 \tabularnewline
39 & 0.05 \tabularnewline
40 & 0.0857142857142858 \tabularnewline
41 & 0.0965079365079363 \tabularnewline
42 & 0.11 \tabularnewline
43 & 0.148235294117647 \tabularnewline
44 & 0.155448916408669 \tabularnewline
45 & 0.3525 \tabularnewline
46 & 0.514063492063492 \tabularnewline
47 & 0.734008097165992 \tabularnewline
48 & 0.824031830238727 \tabularnewline
49 & 1.99321428571429 \tabularnewline
50 & 5.20200135226504 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=283382&T=1

[TABLE]
[ROW][C]Summary of Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0[/C][/ROW]
[ROW][C]2[/C][C]0[/C][/ROW]
[ROW][C]3[/C][C]0[/C][/ROW]
[ROW][C]4[/C][C]0[/C][/ROW]
[ROW][C]5[/C][C]0[/C][/ROW]
[ROW][C]6[/C][C]0[/C][/ROW]
[ROW][C]7[/C][C]0[/C][/ROW]
[ROW][C]8[/C][C]0[/C][/ROW]
[ROW][C]9[/C][C]0[/C][/ROW]
[ROW][C]10[/C][C]0[/C][/ROW]
[ROW][C]11[/C][C]0[/C][/ROW]
[ROW][C]12[/C][C]0[/C][/ROW]
[ROW][C]13[/C][C]0[/C][/ROW]
[ROW][C]14[/C][C]0[/C][/ROW]
[ROW][C]15[/C][C]0[/C][/ROW]
[ROW][C]16[/C][C]0[/C][/ROW]
[ROW][C]17[/C][C]0[/C][/ROW]
[ROW][C]18[/C][C]0[/C][/ROW]
[ROW][C]19[/C][C]0[/C][/ROW]
[ROW][C]20[/C][C]0[/C][/ROW]
[ROW][C]21[/C][C]0[/C][/ROW]
[ROW][C]22[/C][C]0[/C][/ROW]
[ROW][C]23[/C][C]0[/C][/ROW]
[ROW][C]24[/C][C]0[/C][/ROW]
[ROW][C]25[/C][C]0[/C][/ROW]
[ROW][C]26[/C][C]0[/C][/ROW]
[ROW][C]27[/C][C]0[/C][/ROW]
[ROW][C]28[/C][C]0[/C][/ROW]
[ROW][C]29[/C][C]0[/C][/ROW]
[ROW][C]30[/C][C]0[/C][/ROW]
[ROW][C]31[/C][C]0[/C][/ROW]
[ROW][C]32[/C][C]0[/C][/ROW]
[ROW][C]33[/C][C]0[/C][/ROW]
[ROW][C]34[/C][C]0[/C][/ROW]
[ROW][C]35[/C][C]0[/C][/ROW]
[ROW][C]36[/C][C]0[/C][/ROW]
[ROW][C]37[/C][C]0.04[/C][/ROW]
[ROW][C]38[/C][C]0.048[/C][/ROW]
[ROW][C]39[/C][C]0.05[/C][/ROW]
[ROW][C]40[/C][C]0.0857142857142858[/C][/ROW]
[ROW][C]41[/C][C]0.0965079365079363[/C][/ROW]
[ROW][C]42[/C][C]0.11[/C][/ROW]
[ROW][C]43[/C][C]0.148235294117647[/C][/ROW]
[ROW][C]44[/C][C]0.155448916408669[/C][/ROW]
[ROW][C]45[/C][C]0.3525[/C][/ROW]
[ROW][C]46[/C][C]0.514063492063492[/C][/ROW]
[ROW][C]47[/C][C]0.734008097165992[/C][/ROW]
[ROW][C]48[/C][C]0.824031830238727[/C][/ROW]
[ROW][C]49[/C][C]1.99321428571429[/C][/ROW]
[ROW][C]50[/C][C]5.20200135226504[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=283382&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=283382&T=1

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of Dendrogram
LabelHeight
10
20
30
40
50
60
70
80
90
100
110
120
130
140
150
160
170
180
190
200
210
220
230
240
250
260
270
280
290
300
310
320
330
340
350
360
370.04
380.048
390.05
400.0857142857142858
410.0965079365079363
420.11
430.148235294117647
440.155448916408669
450.3525
460.514063492063492
470.734008097165992
480.824031830238727
491.99321428571429
505.20200135226504






Summary of Cut Dendrogram
LabelHeight
10
20
30
40
50
60.0299999999999999
70.03
80.03
90.0366666666666667
100.04
110.0622222222222223
120.0880701754385965
130.09
140.19125
150.191349206349206
160.362186234817814
170.57893899204244
180.75336038961039
192.00438748540168

\begin{tabular}{lllllllll}
\hline
Summary of Cut Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0 \tabularnewline
2 & 0 \tabularnewline
3 & 0 \tabularnewline
4 & 0 \tabularnewline
5 & 0 \tabularnewline
6 & 0.0299999999999999 \tabularnewline
7 & 0.03 \tabularnewline
8 & 0.03 \tabularnewline
9 & 0.0366666666666667 \tabularnewline
10 & 0.04 \tabularnewline
11 & 0.0622222222222223 \tabularnewline
12 & 0.0880701754385965 \tabularnewline
13 & 0.09 \tabularnewline
14 & 0.19125 \tabularnewline
15 & 0.191349206349206 \tabularnewline
16 & 0.362186234817814 \tabularnewline
17 & 0.57893899204244 \tabularnewline
18 & 0.75336038961039 \tabularnewline
19 & 2.00438748540168 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=283382&T=2

[TABLE]
[ROW][C]Summary of Cut Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0[/C][/ROW]
[ROW][C]2[/C][C]0[/C][/ROW]
[ROW][C]3[/C][C]0[/C][/ROW]
[ROW][C]4[/C][C]0[/C][/ROW]
[ROW][C]5[/C][C]0[/C][/ROW]
[ROW][C]6[/C][C]0.0299999999999999[/C][/ROW]
[ROW][C]7[/C][C]0.03[/C][/ROW]
[ROW][C]8[/C][C]0.03[/C][/ROW]
[ROW][C]9[/C][C]0.0366666666666667[/C][/ROW]
[ROW][C]10[/C][C]0.04[/C][/ROW]
[ROW][C]11[/C][C]0.0622222222222223[/C][/ROW]
[ROW][C]12[/C][C]0.0880701754385965[/C][/ROW]
[ROW][C]13[/C][C]0.09[/C][/ROW]
[ROW][C]14[/C][C]0.19125[/C][/ROW]
[ROW][C]15[/C][C]0.191349206349206[/C][/ROW]
[ROW][C]16[/C][C]0.362186234817814[/C][/ROW]
[ROW][C]17[/C][C]0.57893899204244[/C][/ROW]
[ROW][C]18[/C][C]0.75336038961039[/C][/ROW]
[ROW][C]19[/C][C]2.00438748540168[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=283382&T=2

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=283382&T=2

As an alternative you can also use a QR Code:  
QR Code


The GUIDs for individual cells are displayed in the table below:

Summary of Cut Dendrogram
LabelHeight
10
20
30
40
50
60.0299999999999999
70.03
80.03
90.0366666666666667
100.04
110.0622222222222223
120.0880701754385965
130.09
140.19125
150.191349206349206
160.362186234817814
170.57893899204244
180.75336038961039
192.00438748540168


Figures (Output of Computation)

Input Parameters & R Code

Parameters (Session):
par1 = ward ; par2 = 20 ; par3 = FALSE ; par4 = FALSE ;
Parameters (R input):
par1 = ward ; par2 = 20 ; par3 = FALSE ; par4 = FALSE ;
R code (references can be found in the software module):
par4 <- 'FALSE'
par3 <- 'FALSE'
par2 <- '20'
par1 <- 'ward'
par3 <- as.logical(par3)
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}