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Author's title

Author

*Unverified author*

R Software Module

rwasp_hierarchicalclustering.wasp

Title produced by software

Hierarchical Clustering

Date of computation

Mon, 16 Nov 2015 17:07:50 +0000

Cite this page as follows

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?v=date/2015/Nov/16/t1447693706kpq1d3gh441u6ig.htm/, Retrieved Wed, 15 May 2024 08:58:12 +0000

Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL https://freestatistics.org/blog/index.php?pk=283381, Retrieved Wed, 15 May 2024 08:58:12 +0000

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Paste this QR Code to cite your computation.

Original text written by user:

IsPrivate?

No (this computation is public)

User-defined keywords

Estimated Impact

131

Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data)

-     [Hierarchical Clustering] [ATRIBUTOS BIOSIFI...] [2015-11-16 15:50:55] [74be16979710d4c4e7c6647856088456]
-    D    [Hierarchical Clustering] [ATRIBUTOS ESTRUCT...] [2015-11-16 17:07:50] [d41d8cd98f00b204e9800998ecf8427e] [Current]

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Dataseries X:

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Histogram

Boxplots

0.00
0.33
0.33
0.66
0.66
0.66
0.66
0.66
0.66
0.66
0.66
0.66
0.66
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.00
0.00
0.33
0.00
0.00
0.00
0.00
0.00
0.00
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.33
0.66
0.66
0.66
1.00

Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	2 seconds
R Server	'Gertrude Mary Cox' @ cox.wessa.net

\begin{tabular}{lllllllll}
\hline
Summary of computational transaction \tabularnewline
Raw Input & view raw input (R code)  \tabularnewline
Raw Output & view raw output of R engine  \tabularnewline
Computing time & 2 seconds \tabularnewline
R Server & 'Gertrude Mary Cox' @ cox.wessa.net \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=283381&T=0

[TABLE]
[ROW][C]Summary of computational transaction[/C][/ROW]
[ROW][C]Raw Input[/C][C]view raw input (R code) [/C][/ROW]
[ROW][C]Raw Output[/C][C]view raw output of R engine [/C][/ROW]
[ROW][C]Computing time[/C][C]2 seconds[/C][/ROW]
[ROW][C]R Server[/C][C]'Gertrude Mary Cox' @ cox.wessa.net[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=283381&T=0

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=283381&T=0

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Summary of computational transaction
Raw Input	view raw input (R code)
Raw Output	view raw output of R engine
Computing time	2 seconds
R Server	'Gertrude Mary Cox' @ cox.wessa.net

Summary of Dendrogram
Label	Height
1	0
2	0
3	0
4	0
5	0
6	0
7	0
8	0
9	0
10	0
11	0
12	0
13	0
14	0
15	0
16	0
17	0
18	0
19	0
20	0
21	0
22	0
23	0
24	0
25	0
26	0
27	0
28	0
29	0
30	0
31	0
32	0
33	0
34	0
35	0
36	0
37	0
38	0
39	0
40	0
41	0
42	0
43	0
44	0
45	0
46	0
47	0
48	0.631428571428571
49	4.49513513513513
50	7.13539707775002

\begin{tabular}{lllllllll}
\hline
Summary of Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0 \tabularnewline
2 & 0 \tabularnewline
3 & 0 \tabularnewline
4 & 0 \tabularnewline
5 & 0 \tabularnewline
6 & 0 \tabularnewline
7 & 0 \tabularnewline
8 & 0 \tabularnewline
9 & 0 \tabularnewline
10 & 0 \tabularnewline
11 & 0 \tabularnewline
12 & 0 \tabularnewline
13 & 0 \tabularnewline
14 & 0 \tabularnewline
15 & 0 \tabularnewline
16 & 0 \tabularnewline
17 & 0 \tabularnewline
18 & 0 \tabularnewline
19 & 0 \tabularnewline
20 & 0 \tabularnewline
21 & 0 \tabularnewline
22 & 0 \tabularnewline
23 & 0 \tabularnewline
24 & 0 \tabularnewline
25 & 0 \tabularnewline
26 & 0 \tabularnewline
27 & 0 \tabularnewline
28 & 0 \tabularnewline
29 & 0 \tabularnewline
30 & 0 \tabularnewline
31 & 0 \tabularnewline
32 & 0 \tabularnewline
33 & 0 \tabularnewline
34 & 0 \tabularnewline
35 & 0 \tabularnewline
36 & 0 \tabularnewline
37 & 0 \tabularnewline
38 & 0 \tabularnewline
39 & 0 \tabularnewline
40 & 0 \tabularnewline
41 & 0 \tabularnewline
42 & 0 \tabularnewline
43 & 0 \tabularnewline
44 & 0 \tabularnewline
45 & 0 \tabularnewline
46 & 0 \tabularnewline
47 & 0 \tabularnewline
48 & 0.631428571428571 \tabularnewline
49 & 4.49513513513513 \tabularnewline
50 & 7.13539707775002 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=283381&T=1

[TABLE]
[ROW][C]Summary of Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0[/C][/ROW]
[ROW][C]2[/C][C]0[/C][/ROW]
[ROW][C]3[/C][C]0[/C][/ROW]
[ROW][C]4[/C][C]0[/C][/ROW]
[ROW][C]5[/C][C]0[/C][/ROW]
[ROW][C]6[/C][C]0[/C][/ROW]
[ROW][C]7[/C][C]0[/C][/ROW]
[ROW][C]8[/C][C]0[/C][/ROW]
[ROW][C]9[/C][C]0[/C][/ROW]
[ROW][C]10[/C][C]0[/C][/ROW]
[ROW][C]11[/C][C]0[/C][/ROW]
[ROW][C]12[/C][C]0[/C][/ROW]
[ROW][C]13[/C][C]0[/C][/ROW]
[ROW][C]14[/C][C]0[/C][/ROW]
[ROW][C]15[/C][C]0[/C][/ROW]
[ROW][C]16[/C][C]0[/C][/ROW]
[ROW][C]17[/C][C]0[/C][/ROW]
[ROW][C]18[/C][C]0[/C][/ROW]
[ROW][C]19[/C][C]0[/C][/ROW]
[ROW][C]20[/C][C]0[/C][/ROW]
[ROW][C]21[/C][C]0[/C][/ROW]
[ROW][C]22[/C][C]0[/C][/ROW]
[ROW][C]23[/C][C]0[/C][/ROW]
[ROW][C]24[/C][C]0[/C][/ROW]
[ROW][C]25[/C][C]0[/C][/ROW]
[ROW][C]26[/C][C]0[/C][/ROW]
[ROW][C]27[/C][C]0[/C][/ROW]
[ROW][C]28[/C][C]0[/C][/ROW]
[ROW][C]29[/C][C]0[/C][/ROW]
[ROW][C]30[/C][C]0[/C][/ROW]
[ROW][C]31[/C][C]0[/C][/ROW]
[ROW][C]32[/C][C]0[/C][/ROW]
[ROW][C]33[/C][C]0[/C][/ROW]
[ROW][C]34[/C][C]0[/C][/ROW]
[ROW][C]35[/C][C]0[/C][/ROW]
[ROW][C]36[/C][C]0[/C][/ROW]
[ROW][C]37[/C][C]0[/C][/ROW]
[ROW][C]38[/C][C]0[/C][/ROW]
[ROW][C]39[/C][C]0[/C][/ROW]
[ROW][C]40[/C][C]0[/C][/ROW]
[ROW][C]41[/C][C]0[/C][/ROW]
[ROW][C]42[/C][C]0[/C][/ROW]
[ROW][C]43[/C][C]0[/C][/ROW]
[ROW][C]44[/C][C]0[/C][/ROW]
[ROW][C]45[/C][C]0[/C][/ROW]
[ROW][C]46[/C][C]0[/C][/ROW]
[ROW][C]47[/C][C]0[/C][/ROW]
[ROW][C]48[/C][C]0.631428571428571[/C][/ROW]
[ROW][C]49[/C][C]4.49513513513513[/C][/ROW]
[ROW][C]50[/C][C]7.13539707775002[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=283381&T=1

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=283381&T=1

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Summary of Dendrogram
Label	Height
1	0
2	0
3	0
4	0
5	0
6	0
7	0
8	0
9	0
10	0
11	0
12	0
13	0
14	0
15	0
16	0
17	0
18	0
19	0
20	0
21	0
22	0
23	0
24	0
25	0
26	0
27	0
28	0
29	0
30	0
31	0
32	0
33	0
34	0
35	0
36	0
37	0
38	0
39	0
40	0
41	0
42	0
43	0
44	0
45	0
46	0
47	0
48	0.631428571428571
49	4.49513513513513
50	7.13539707775002

Summary of Cut Dendrogram
Label	Height
1	0
2	0
3	0
4	0
5	0
6	0
7	0
8	0
9	0
10	0
11	0
12	0
13	0
14	0
15	0
16	0
17	0.631428571428571
18	0.651081081081081
19	4.45101975925505

\begin{tabular}{lllllllll}
\hline
Summary of Cut Dendrogram \tabularnewline
Label & Height \tabularnewline
1 & 0 \tabularnewline
2 & 0 \tabularnewline
3 & 0 \tabularnewline
4 & 0 \tabularnewline
5 & 0 \tabularnewline
6 & 0 \tabularnewline
7 & 0 \tabularnewline
8 & 0 \tabularnewline
9 & 0 \tabularnewline
10 & 0 \tabularnewline
11 & 0 \tabularnewline
12 & 0 \tabularnewline
13 & 0 \tabularnewline
14 & 0 \tabularnewline
15 & 0 \tabularnewline
16 & 0 \tabularnewline
17 & 0.631428571428571 \tabularnewline
18 & 0.651081081081081 \tabularnewline
19 & 4.45101975925505 \tabularnewline
\hline
\end{tabular}
%Source: https://freestatistics.org/blog/index.php?pk=283381&T=2

[TABLE]
[ROW][C]Summary of Cut Dendrogram[/C][/ROW]
[ROW][C]Label[/C][C]Height[/C][/ROW]
[ROW][C]1[/C][C]0[/C][/ROW]
[ROW][C]2[/C][C]0[/C][/ROW]
[ROW][C]3[/C][C]0[/C][/ROW]
[ROW][C]4[/C][C]0[/C][/ROW]
[ROW][C]5[/C][C]0[/C][/ROW]
[ROW][C]6[/C][C]0[/C][/ROW]
[ROW][C]7[/C][C]0[/C][/ROW]
[ROW][C]8[/C][C]0[/C][/ROW]
[ROW][C]9[/C][C]0[/C][/ROW]
[ROW][C]10[/C][C]0[/C][/ROW]
[ROW][C]11[/C][C]0[/C][/ROW]
[ROW][C]12[/C][C]0[/C][/ROW]
[ROW][C]13[/C][C]0[/C][/ROW]
[ROW][C]14[/C][C]0[/C][/ROW]
[ROW][C]15[/C][C]0[/C][/ROW]
[ROW][C]16[/C][C]0[/C][/ROW]
[ROW][C]17[/C][C]0.631428571428571[/C][/ROW]
[ROW][C]18[/C][C]0.651081081081081[/C][/ROW]
[ROW][C]19[/C][C]4.45101975925505[/C][/ROW]
[/TABLE]
Source: https://freestatistics.org/blog/index.php?pk=283381&T=2

Globally Unique Identifier (entire table): ba.freestatistics.org/blog/index.php?pk=283381&T=2

As an alternative you can also use a QR Code:

The GUIDs for individual cells are displayed in the table below:

Summary of Cut Dendrogram
Label	Height
1	0
2	0
3	0
4	0
5	0
6	0
7	0
8	0
9	0
10	0
11	0
12	0
13	0
14	0
15	0
16	0
17	0.631428571428571
18	0.651081081081081
19	4.45101975925505

Figure 1

PNG link

Postscript link

PDF link

Figure 2

PNG link

Postscript link

PDF link

Parameters (Session):

par1 = ward ; par2 = 20 ; par3 = FALSE ; par4 = FALSE ;

Parameters (R input):

par1 = ward ; par2 = 20 ; par3 = FALSE ; par4 = FALSE ;

R code (references can be found in the software module):

par4 <- 'FALSE'
par3 <- 'FALSE'
par2 <- '20'
par1 <- 'ward'
par3 <- as.logical(par3)
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}

Free Statistics

Description of Statistical Computation

Tree of Dependent Computations

Dataset

Tables (Output of Computation)

Figures (Output of Computation)

Input Parameters & R Code