Last updated on 2025-07-15 05:52:05 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/110s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.458, system: 0.036, elapsed: 2.171 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.971, system: 0.050, elapsed: 12.403 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.180, system: 0.013, elapsed: 0.270 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.719, system: 0.173, elapsed: 5.460 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.231 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.053, system: 0.295, elapsed: 21.311 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.421, system: 0.025, elapsed: 2.010 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.959, system: 0.059, elapsed: 12.963 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.011, elapsed: 0.272 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.676, system: 0.162, elapsed: 5.308 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.004, elapsed: 0.251 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.970, system: 0.280, elapsed: 21.663 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.558, system: 0.032, elapsed: 2.382 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.991, system: 0.060, elapsed: 12.400 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.013, elapsed: 0.276 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.671, system: 0.172, elapsed: 5.384 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.004, elapsed: 0.266 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.138, system: 0.207, elapsed: 1.079 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.372, system: 0.510, elapsed: 22.783 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.485, system: 0.032, elapsed: 2.233 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.032, system: 0.065, elapsed: 12.821 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.263 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.689, system: 0.164, elapsed: 5.503 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.002, elapsed: 0.235 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.231, system: 0.430, elapsed: 14.869 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.463, system: 0.732, elapsed: 36.956 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/103s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.489, system: 0.040, elapsed: 2.192 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.753, system: 0.051, elapsed: 10.265 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.014, elapsed: 0.314 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.574, system: 0.173, elapsed: 5.041 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.004, elapsed: 0.240 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.709, system: 0.301, elapsed: 18.885 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.530, system: 0.034, elapsed: 1.933 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.996, system: 0.073, elapsed: 11.696 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.011, elapsed: 0.306 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.676, system: 0.157, elapsed: 5.151 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.004, elapsed: 0.258 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.101, system: 0.302, elapsed: 20.093 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.543, system: 0.030, elapsed: 2.265 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.086, system: 0.081, elapsed: 12.124 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.009, elapsed: 0.262 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.512, system: 0.157, elapsed: 4.777 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.206 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.058, system: 0.210, elapsed: 0.827 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.203, system: 0.527, elapsed: 21.436 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.473, system: 0.026, elapsed: 1.850 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.121, system: 0.060, elapsed: 12.977 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.283 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.594, system: 0.171, elapsed: 5.558 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.004, elapsed: 0.238 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.089, system: 0.441, elapsed: 13.205 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.266, system: 0.736, elapsed: 35.025 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64