Last updated on 2026-01-11 05:50:32 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/290s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.520, system: 0.048, elapsed: 2.230 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.366, system: 0.062, elapsed: 11.391 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.018, elapsed: 1.093 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.508, system: 0.673, elapsed: 30.875 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.004, elapsed: 0.167 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.411, system: 0.833, elapsed: 46.454 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.483, system: 0.032, elapsed: 1.712 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.555, system: 0.096, elapsed: 12.968 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.207, system: 0.013, elapsed: 0.345 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.108, system: 0.794, elapsed: 95.688 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.006, elapsed: 0.181 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.232, system: 0.977, elapsed: 111.520 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.482, system: 0.032, elapsed: 2.544 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.548, system: 0.097, elapsed: 12.505 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.015, elapsed: 0.263 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.959, system: 0.691, elapsed: 13.059 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.004, elapsed: 0.213 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.238, system: 0.239, elapsed: 0.963 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.307, system: 1.120, elapsed: 30.489 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.581, system: 0.041, elapsed: 2.637 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.524, system: 0.090, elapsed: 13.869 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.017, elapsed: 0.842 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.602, system: 0.715, elapsed: 64.614 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.006, elapsed: 0.183 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 14.924, system: 1.023, elapsed: 11.915 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 33.714, system: 1.921, elapsed: 94.997 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/229s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.605, system: 0.041, elapsed: 4.939 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.659, system: 0.068, elapsed: 23.949 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.208, system: 0.016, elapsed: 0.594 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.384, system: 0.447, elapsed: 13.106 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.007, elapsed: 0.407 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.626, system: 0.613, elapsed: 44.719 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.592, system: 0.033, elapsed: 3.592 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.722, system: 0.068, elapsed: 23.875 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.014, elapsed: 0.556 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.369, system: 0.406, elapsed: 12.901 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.004, elapsed: 0.474 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.615, system: 0.563, elapsed: 42.813 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.590, system: 0.032, elapsed: 4.064 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.657, system: 0.083, elapsed: 25.901 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.013, elapsed: 0.583 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.308, system: 0.422, elapsed: 13.131 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.005, elapsed: 0.484 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.203, system: 0.242, elapsed: 2.118 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.788, system: 0.832, elapsed: 48.095 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.601, system: 0.035, elapsed: 4.048 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.628, system: 0.075, elapsed: 26.008 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.015, elapsed: 0.614 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.279, system: 0.426, elapsed: 12.599 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.005, elapsed: 0.468 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.823, system: 0.543, elapsed: 31.689 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.403, system: 1.122, elapsed: 77.229 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64