Last updated on 2025-11-06 05:50:37 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| FossilSim | 6 | 7 | |
| FossilSimShiny | 1 | 2 | 10 |
| ML.MSBD | 13 |
Current CRAN status: ERROR: 6, OK: 7
Version: 2.4.2
Check: R code for possible problems
Result: NOTE
fortify.fbdrange: no visible global function definition for
‘adjust_hclust_tip.edge.len’
Undefined global functions or variables:
adjust_hclust_tip.edge.len
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64
Version: 2.4.2
Check: examples
Result: ERROR
Running examples in ‘FossilSim-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.fbdrange
> ### Title: Plot oriented tree with stratigraphic ranges
> ### Aliases: plot.fbdrange
>
> ### ** Examples
>
> tree_file <- system.file("extdata", "fbdrange.trees", package = "FossilSim")
> fbdr <- get_fbdrange_from_file(tree_file)
> p <- plot(fbdr, smart.labels = TRUE)
Error in adjust_hclust_tip.edge.len(res, x) :
could not find function "adjust_hclust_tip.edge.len"
Calls: plot ... <Anonymous> -> ggplot.default -> fortify -> fortify.fbdrange
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
paleotree.record.to.fossils 5.043 0.282 6.871
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.4.2
Check: examples
Result: ERROR
Running examples in ‘FossilSim-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.fbdrange
> ### Title: Plot oriented tree with stratigraphic ranges
> ### Aliases: plot.fbdrange
>
> ### ** Examples
>
> tree_file <- system.file("extdata", "fbdrange.trees", package = "FossilSim")
> fbdr <- get_fbdrange_from_file(tree_file)
> p <- plot(fbdr, smart.labels = TRUE)
Error in adjust_hclust_tip.edge.len(res, x) :
could not find function "adjust_hclust_tip.edge.len"
Calls: plot ... <Anonymous> -> ggplot.default -> fortify -> fortify.fbdrange
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.4.2
Check: examples
Result: ERROR
Running examples in ‘FossilSim-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot.fbdrange
> ### Title: Plot oriented tree with stratigraphic ranges
> ### Aliases: plot.fbdrange
>
> ### ** Examples
>
> tree_file <- system.file("extdata", "fbdrange.trees", package = "FossilSim")
> fbdr <- get_fbdrange_from_file(tree_file)
> p <- plot(fbdr, smart.labels = TRUE)
Error in adjust_hclust_tip.edge.len(res, x) :
could not find function "adjust_hclust_tip.edge.len"
Calls: plot ... <Anonymous> -> ggplot.default -> fortify -> fortify.fbdrange
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.4.2
Check: examples
Result: ERROR
Running examples in ‘FossilSim-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.fbdrange
> ### Title: Plot oriented tree with stratigraphic ranges
> ### Aliases: plot.fbdrange
>
> ### ** Examples
>
> tree_file <- system.file("extdata", "fbdrange.trees", package = "FossilSim")
> fbdr <- get_fbdrange_from_file(tree_file)
> p <- plot(fbdr, smart.labels = TRUE)
Error in adjust_hclust_tip.edge.len(res, x) :
could not find function "adjust_hclust_tip.edge.len"
Calls: plot ... <Anonymous> -> ggplot.default -> fortify -> fortify.fbdrange
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
paleotree.record.to.fossils 4.65 0.069 5.268
Flavor: r-patched-linux-x86_64
Version: 2.4.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘ggtree’
Package suggested but not available for checking: ‘treeio’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-linux-x86_64
Current CRAN status: ERROR: 1, NOTE: 2, OK: 10
Version: 1.1.2
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘TreeSim’ ‘shinyjs’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘FossilSim’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-linux-x86_64
Current CRAN status: OK: 13