Last updated on 2026-04-09 05:52:00 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| rmlnomogram | 2 | 12 | |
| rplec | 2 | 12 |
Current CRAN status: NOTE: 2, OK: 12
Version: 0.1.2
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Herdiantri Sufriyana <herdi@nycu.edu.tw>’
The Description field contains
<https://htmlpreview.github.io/?https://github.com/herdiantrisufriyana/rmlnomogram/blob/master/doc/ml_nomogram_exemplar.html>.
Please enclose URLs in angle brackets (<...>).
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 2, OK: 12
Version: 0.1.3
Check: examples
Result: ERROR
Running examples in ‘rplec-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: download_beta_values_case
> ### Title: Access Beta values at individual CpG sites for case group
> ### Aliases: download_beta_values_case
> ### Keywords: dataset
>
> ### ** Examples
>
>
> beta_values_case <- download_beta_values_case()
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
=======================================
downloaded 14.1 MB
Warning in utils::download.file(url, temp, mode = "wb") :
downloaded length 14745600 != reported length 18750575
Warning in utils::download.file(url, temp, mode = "wb") :
URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda': Timeout of 60 seconds was reached
Error in utils::download.file(url, temp, mode = "wb") :
download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
Calls: download_beta_values_case -> <Anonymous>
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/184s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(rplec)
>
> test_check("rplec")
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
================================
downloaded 11.7 MB
Saving _problems/test-bmiq_norm_450k-9.R
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
===================================
downloaded 12.6 MB
Saving _problems/test-plec-5.R
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
====================================
downloaded 13.2 MB
Saving _problems/test-qc-5.R
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 15 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bmiq_norm_450k.R:9:3'): bmiq_norm_450k validates inputs correctly ──
Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
Backtrace:
▆
1. └─rplec::download_beta_values_case() at test-bmiq_norm_450k.R:9:3
2. └─utils::download.file(url, temp, mode = "wb")
── Error ('test-plec.R:5:3'): plec validates inputs correctly ──────────────────
Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
Backtrace:
▆
1. └─rplec::download_beta_values_case() at test-plec.R:5:3
2. └─utils::download.file(url, temp, mode = "wb")
── Error ('test-qc.R:5:3'): qc validates inputs correctly ──────────────────────
Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
Backtrace:
▆
1. └─rplec::download_beta_values_case() at test-qc.R:5:3
2. └─utils::download.file(url, temp, mode = "wb")
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 15 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘placental_aging_analysis.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
=====================================
downloaded 13.5 MB
Quitting from placental_aging_analysis.Rmd:34-39 [Load our example data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
---
Backtrace:
▆
1. └─rplec::download_beta_values_case()
2. └─utils::download.file(url, temp, mode = "wb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'placental_aging_analysis.Rmd' failed with diagnostics:
download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
--- failed re-building ‘placental_aging_analysis.Rmd’
SUMMARY: processing the following file failed:
‘placental_aging_analysis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: examples
Result: ERROR
Running examples in ‘rplec-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: download_beta_values_case
> ### Title: Access Beta values at individual CpG sites for case group
> ### Aliases: download_beta_values_case
> ### Keywords: dataset
>
> ### ** Examples
>
>
> beta_values_case <- download_beta_values_case()
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
=====================================
downloaded 13.6 MB
Warning in utils::download.file(url, temp, mode = "wb") :
downloaded length 14248821 != reported length 18750575
Warning in utils::download.file(url, temp, mode = "wb") :
URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda': Timeout of 60 seconds was reached
Error in utils::download.file(url, temp, mode = "wb") :
download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
Calls: download_beta_values_case -> <Anonymous>
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/185s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(rplec)
>
> test_check("rplec")
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
================================
downloaded 11.6 MB
Saving _problems/test-bmiq_norm_450k-9.R
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
===================================
downloaded 12.6 MB
Saving _problems/test-plec-5.R
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
==================================
downloaded 12.2 MB
Saving _problems/test-qc-5.R
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 15 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bmiq_norm_450k.R:9:3'): bmiq_norm_450k validates inputs correctly ──
Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
Backtrace:
▆
1. └─rplec::download_beta_values_case() at test-bmiq_norm_450k.R:9:3
2. └─utils::download.file(url, temp, mode = "wb")
── Error ('test-plec.R:5:3'): plec validates inputs correctly ──────────────────
Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
Backtrace:
▆
1. └─rplec::download_beta_values_case() at test-plec.R:5:3
2. └─utils::download.file(url, temp, mode = "wb")
── Error ('test-qc.R:5:3'): qc validates inputs correctly ──────────────────────
Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
Backtrace:
▆
1. └─rplec::download_beta_values_case() at test-qc.R:5:3
2. └─utils::download.file(url, temp, mode = "wb")
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 15 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘placental_aging_analysis.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda'
Content type 'application/octet-stream' length 18750575 bytes (17.9 MB)
==================================
downloaded 12.4 MB
Quitting from placental_aging_analysis.Rmd:34-39 [Load our example data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `utils::download.file()`:
! download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
---
Backtrace:
▆
1. └─rplec::download_beta_values_case()
2. └─utils::download.file(url, temp, mode = "wb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'placental_aging_analysis.Rmd' failed with diagnostics:
download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed
--- failed re-building ‘placental_aging_analysis.Rmd’
SUMMARY: processing the following file failed:
‘placental_aging_analysis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64