CRAN Package Check Results for Package rplec

Last updated on 2026-04-09 05:51:38 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.1.3	18.65	242.65	261.30	OK
r-devel-linux-x86_64-debian-gcc	0.1.3	14.83	58.65	73.48	ERROR
r-devel-linux-x86_64-fedora-clang	0.1.3	30.00	389.70	419.70	OK
r-devel-linux-x86_64-fedora-gcc	0.1.3	29.00	401.31	430.31	OK
r-devel-macos-arm64	0.1.3	6.00	69.00	75.00	OK
r-devel-windows-x86_64	0.1.3	21.00	291.00	312.00	OK
r-patched-linux-x86_64	0.1.3	17.86	72.92	90.78	ERROR
r-release-linux-x86_64	0.1.3	12.98	228.10	241.08	OK
r-release-macos-arm64	0.1.3				OK
r-release-macos-x86_64	0.1.3	13.00	226.00	239.00	OK
r-release-windows-x86_64	0.1.3	20.00	290.00	310.00	OK
r-oldrel-macos-arm64	0.1.3				OK
r-oldrel-macos-x86_64	0.1.3	13.00	270.00	283.00	OK
r-oldrel-windows-x86_64	0.1.3	25.00	321.00	346.00	OK

Check Details

Version: 0.1.3
Check: examples
Result: ERROR Running examples in ‘rplec-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: download_beta_values_case > ### Title: Access Beta values at individual CpG sites for case group > ### Aliases: download_beta_values_case > ### Keywords: dataset > > ### ** Examples > > > beta_values_case <- download_beta_values_case() trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) ======================================= downloaded 14.1 MB Warning in utils::download.file(url, temp, mode = "wb") : downloaded length 14745600 != reported length 18750575 Warning in utils::download.file(url, temp, mode = "wb") : URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda': Timeout of 60 seconds was reached Error in utils::download.file(url, temp, mode = "wb") : download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed Calls: download_beta_values_case -> <Anonymous> Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.3
Check: tests
Result: ERROR Running ‘testthat.R’ [5s/184s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(rplec) > > test_check("rplec") trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) ================================ downloaded 11.7 MB Saving _problems/test-bmiq_norm_450k-9.R trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) =================================== downloaded 12.6 MB Saving _problems/test-plec-5.R trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) ==================================== downloaded 13.2 MB Saving _problems/test-qc-5.R [ FAIL 3 | WARN 6 | SKIP 0 | PASS 15 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-bmiq_norm_450k.R:9:3'): bmiq_norm_450k validates inputs correctly ── Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed Backtrace: ▆ 1. └─rplec::download_beta_values_case() at test-bmiq_norm_450k.R:9:3 2. └─utils::download.file(url, temp, mode = "wb") ── Error ('test-plec.R:5:3'): plec validates inputs correctly ────────────────── Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed Backtrace: ▆ 1. └─rplec::download_beta_values_case() at test-plec.R:5:3 2. └─utils::download.file(url, temp, mode = "wb") ── Error ('test-qc.R:5:3'): qc validates inputs correctly ────────────────────── Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed Backtrace: ▆ 1. └─rplec::download_beta_values_case() at test-qc.R:5:3 2. └─utils::download.file(url, temp, mode = "wb") [ FAIL 3 | WARN 6 | SKIP 0 | PASS 15 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘placental_aging_analysis.Rmd’ using rmarkdown trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) ===================================== downloaded 13.5 MB Quitting from placental_aging_analysis.Rmd:34-39 [Load our example data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `utils::download.file()`: ! download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed --- Backtrace: ▆ 1. └─rplec::download_beta_values_case() 2. └─utils::download.file(url, temp, mode = "wb") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'placental_aging_analysis.Rmd' failed with diagnostics: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed --- failed re-building ‘placental_aging_analysis.Rmd’ SUMMARY: processing the following file failed: ‘placental_aging_analysis.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.3
Check: examples
Result: ERROR Running examples in ‘rplec-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: download_beta_values_case > ### Title: Access Beta values at individual CpG sites for case group > ### Aliases: download_beta_values_case > ### Keywords: dataset > > ### ** Examples > > > beta_values_case <- download_beta_values_case() trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) ===================================== downloaded 13.6 MB Warning in utils::download.file(url, temp, mode = "wb") : downloaded length 14248821 != reported length 18750575 Warning in utils::download.file(url, temp, mode = "wb") : URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda': Timeout of 60 seconds was reached Error in utils::download.file(url, temp, mode = "wb") : download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed Calls: download_beta_values_case -> <Anonymous> Execution halted Flavor: r-patched-linux-x86_64

Version: 0.1.3
Check: tests
Result: ERROR Running ‘testthat.R’ [6s/185s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(rplec) > > test_check("rplec") trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) ================================ downloaded 11.6 MB Saving _problems/test-bmiq_norm_450k-9.R trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) =================================== downloaded 12.6 MB Saving _problems/test-plec-5.R trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) ================================== downloaded 12.2 MB Saving _problems/test-qc-5.R [ FAIL 3 | WARN 6 | SKIP 0 | PASS 15 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-bmiq_norm_450k.R:9:3'): bmiq_norm_450k validates inputs correctly ── Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed Backtrace: ▆ 1. └─rplec::download_beta_values_case() at test-bmiq_norm_450k.R:9:3 2. └─utils::download.file(url, temp, mode = "wb") ── Error ('test-plec.R:5:3'): plec validates inputs correctly ────────────────── Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed Backtrace: ▆ 1. └─rplec::download_beta_values_case() at test-plec.R:5:3 2. └─utils::download.file(url, temp, mode = "wb") ── Error ('test-qc.R:5:3'): qc validates inputs correctly ────────────────────── Error in `utils::download.file(url, temp, mode = "wb")`: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed Backtrace: ▆ 1. └─rplec::download_beta_values_case() at test-qc.R:5:3 2. └─utils::download.file(url, temp, mode = "wb") [ FAIL 3 | WARN 6 | SKIP 0 | PASS 15 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64

Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘placental_aging_analysis.Rmd’ using rmarkdown trying URL 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' Content type 'application/octet-stream' length 18750575 bytes (17.9 MB) ================================== downloaded 12.4 MB Quitting from placental_aging_analysis.Rmd:34-39 [Load our example data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `utils::download.file()`: ! download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed --- Backtrace: ▆ 1. └─rplec::download_beta_values_case() 2. └─utils::download.file(url, temp, mode = "wb") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'placental_aging_analysis.Rmd' failed with diagnostics: download from 'https://raw.githubusercontent.com/herdiantrisufriyana/rplec/master/data/beta_values_case.rda' failed --- failed re-building ‘placental_aging_analysis.Rmd’ SUMMARY: processing the following file failed: ‘placental_aging_analysis.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64