Core Utilities for Single-Cell RNA-Seq R package sccore version 1.0.7 CRAN Task View: Omics (https://CRAN.R-project.org/view=Omics) Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels. Software Depends: R (>= 3.5.0) Imports: dplyr, ggplot2, ggrepel, graphics, grDevices, igraph, irlba, magrittr, Matrix, methods, parallel, pbmcapply, pROC, Rcpp, rlang, scales, stats, tibble, utils, uwot, withr LinkingTo: Rcpp, RcppArmadillo, RcppProgress, RcppEigen Suggests: ggrastr (>= 0.1.7), jsonlite, philentropy, rmumps, Seurat, testthat Evan Biederstedt <evan.biederstedt@gmail.com> Comprehensive R Archive Network (CRAN) Viktor Petukhov [aut], Rasmus Rydbirk [aut], Peter Kharchenko [aut], Evan Biederstedt [aut, cre] GPL-3 2026-04-06 application/tgz https://CRAN.R-project.org/package=sccore doi:10.32614/CRAN.package.sccore