Phylogenetic Analysis with Dependent Discrete Models R package rphylo version 0.1.1 Implementation of dependent discrete models (with reversible jump MCMC) derived from 'BayesTraits' V5.0.3 <https://github.com/AndrewPMeade/BayesTraits-Release/tree/Release>. Original software copyright Andrew Meade and contributors, distributed under GPL-3. Modifications for this package by Vivian G. Li <liguo.vivian@gmail.com>. The following articles should be referenced when using this package: Pagel, M., A. Meade and D. Barker (2004) "Bayesian estimation of ancestral character states on phylogenies" <doi:10.1080/10635150490522232>; Pagel, M. (1994) "Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters" <doi:10.1098/rspb.1994.0006>; Pagel, M. and A. Meade (2006) "Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo" <doi:10.1086/503444>. Software Depends: R (>= 3.5) Imports: ape, phangorn, expm, stats Vivian G. Li <liguo.vivian@gmail.com> Comprehensive R Archive Network (CRAN) Vivian G. Li [aut, cre], Andrew Meade [ctb] (Original 'BayesTraits' implementation), Mark Pagel [ctb] (Original 'BayesTraits' implementation) GPL-3 2026-06-23 application/tgz https://CRAN.R-project.org/package=rphylo doi:10.32614/CRAN.package.rphylo