Clustering Genetic Sequence Data Using the HierBAPS Algorithm R package rhierbaps version 1.1.4 Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default. Software Imports: ape, purrr, utils, ggplot2, matrixStats, patchwork, methods Suggests: knitr, rmarkdown, ggtree, phytools, testthat, formatR Gerry Tonkin-Hill <g.tonkinhill@gmail.com> Comprehensive R Archive Network (CRAN) Gerry Tonkin-Hill [cre, aut] MIT + file LICENSE (https://CRAN.R-project.org/package=rhierbaps/LICENSE) 2022-11-18 application/tgz https://CRAN.R-project.org/package=rhierbaps doi:10.32614/CRAN.package.rhierbaps