Imports: ald, VineCopula, stats, graphics, MASS

Depends: R (>= 3.5.0)
Imports: ape, seqinr, stringr, kmer, DECIPHER, beepr, Biostrings,
grDevices, doParallel, foreach, parallel
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Suggests: testthat, knitr, rmarkdown, Rtsne, scatterplot3d

Imports: stats
Suggests: Rfast, Rfast2, knitr, rmarkdown, testthat (>= 3.0.0)

Suggests: cluster, scatterplot3d, MASS, R.rsp

Depends: R (>= 3.0), raster, igraph, oro.dicom, plyr
Suggests: knitr, rmarkdown, testthat, covr

Depends: Biobase
Imports: WGCNA, heatmapFlex, convertid (>= 0.2.1), methods, graphics,
grDevices, rappdirs
Suggests: rmarkdown, knitr, BiocManager, org.Hs.eg.db, org.Mm.eg.db

Imports: naturalsort (>= 0.1.2), methods

Depends: R (>= 4.3.0)
Imports: cli, dplyr, glue, hms, lubridate, purrr, rlang, sf, stringr,
tibble, tidyr, uuid
Suggests: gt, knitr, nanoparquet, ozmaps, readr, rmarkdown, testthat
(>= 3.0.0), withr

Depends: R (>= 2.10)
Imports: fastmatch, vegan, SRS, edgeR, ggplot2, ggrepel, stats, plotly,
reshape2

Suggests: car, splines, survival, testthat

Imports: Rcpp, Formula, ggplot2, broom, jsonlite

Imports: expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel,
viridis, Rmpfr, igraph, phytools

Depends: R (>= 3.0.1), ggplot2, gplots, RColorBrewer, igraph, stats,
grDevices
Suggests: datasets

Suggests: knitr, Rdisop, rmarkdown, testthat, vdiffr

Imports: MASS, Matrix, methods, nlme, Rcpp

Depends: R (>= 3.2)
Imports: stats, utils, VGAM, numDeriv, ggplot2, trust, dplyr, magrittr,
detectseparation, scales, rlang
Suggests: knitr, rmarkdown, testthat, covr, limma, slam, R.rsp, optimx,
phyloseq

Suggests: knitr, testthat, rmarkdown, RColorBrewer, MASS, mvtnorm,
randomForest, xgboost, MLmetrics

Suggests: knitr, later (>= 1.1.0), magrittr (>= 2.0.0), promises,
reticulate, rmarkdown, testthat (>= 3.0.0)

Imports: gganimate, ggplot2, gridExtra, qicharts2, reshape2

Suggests: DT, dplyr, knitr, plotly, readr, rmarkdown, remotes, testthat
(>= 2.1.0)

Imports: methods, stats, utils, grDevices

Depends: R (>= 3.0.0)
Imports: data.table, dplyr, ggplot2, lubridate, magrittr, padr, plyr,
RColorBrewer, re2, rlang, rmarkdown, scales, shiny,
shinydashboard, shinyjs, shinyWidgets, stringi, stringr,
tibble, tidyr
Suggests: janeaustenr, shinytest2, sotu, testthat (>= 3.0.0)