Depends: R (>= 4.1.0)
Imports: metafor (>= 3.8-1), splines, stats, utils
Suggests: clubSandwich (>= 0.5.10), testthat (>= 3.0.0), knitr,
rmarkdown, ggplot2, dplyr

Imports: SummarizedExperiment, openxlsx, stringr, dplyr, tidyr, tibble,
agricolae, ggplot2, ggrepel, utils, rlang, data.table,
S4Vectors, viridis, viridisLite, plotly, limma

Suggests: GEOquery, org.Hs.eg.db, VennDiagram, annaffy, hgu133plus2.db,
hgu133a.db, hgu95av2.db

Imports: estmeansd, Hmisc, metaBLUE, metafor, stats

Depends: R (>= 2.10)
Imports: FNN, progress (>= 1.2.0), methods
Suggests: shiny, miniUI, testthat (>= 2.1.0), data.table, covr, sf

Depends: R (>= 3.5.0), stats, graphics
Imports: metafor (>= 2.0.0), mvtnorm, lme4, dplyr, plyr, methods, pROC,
ggplot2
Suggests: coda, runjags, rjags, ggmcmc, logistf (>= 1.23), testthat (>=
1.0.2)

Depends: R (>= 3.5)
Imports: broom, crayon, dplyr, ggplot2, impute, lifecycle, magrittr,
missForest, pcaMethods, purrr, readr, rlang, stats, stringi,
tibble, tidyr, utils, vctrs, withr
Suggests: knitr, qsmooth, rmarkdown, stringr, testthat (>= 3.0.0)

Depends: R (>= 4.1.0)
Imports: dplyr (>= 1.0.0), GGally, ggforce, ggplot2 (>= 3.3.0),
ggrepel, lme4, lmerTest, magrittr, mathjaxr, methods,
patchwork, purrr, rlang (>= 0.4.11), tibble, tidyr, tidyselect
(>= 1.0.0)
Suggests: DT, knitr, rmarkdown, roxygen2, rstudioapi

Depends: R (>= 4.1.0), igraph (>= 1.3.5)
Imports: graphics, dplyr, ggplot2 (>= 3.2.0), ggnewscale, ggrepel,
grDevices, magrittr, reshape2, stats, tibble, utils, pcutils
(>= 0.2.7), rlang
Suggests: pheatmap, vegan, stringr, foreach, doSNOW, snow, knitr,
rmarkdown, prettydoc, Hmisc, gifski, ggraph, networkD3,
ggpmisc, ggtree, treeio, circlize, jsonify, ggpubr, corrplot,
philentropy, spatstat.random, spatstat.geom, sf

Depends: R (>= 3.5.0)
Imports: GGally, network, ggplot2, intergraph, dplyr, igraph, Matrix,
visNetwork, grDevices, RColorBrewer, magrittr, ggimage, rlang,
sna
Suggests: spelling, testthat, covr, knitr, markdown, rmarkdown

Depends: R (>= 4.1.0)
Imports: glmnet, tm, textstem, methods, lexicon, utils
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), covr, wordcloud,
vdiffr