Depends: R (>= 3.5)
Imports: jsonlite, lime, quanteda, reticulate, utils, stats
Suggests: knitr, quanteda.textmodels, rmarkdown, testthat (>= 3.0.0),
withr

Depends: R (>= 4.2.0), methods, gRbase (>= 2.0.2),
Imports: igraph, stats4, broom, Rcpp (>= 0.11.1)
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, gRbase
Suggests: bnlearn, gRim, knitr, markdown, microbenchmark, Rgraphviz,
testthat (>= 2.1.0)

Depends: R (>= 4.2)
Imports: ggplot2, graphics, grDevices, igraph, methods, Rcpp (>=
0.12.11.4), sf, stats, terra, utils
LinkingTo: Rcpp
Suggests: covr, cowplot, DiagrammeR, DiagrammeRsvg, dplyr, ggthemes,
knitr, parallel, rmarkdown, rsvg, spelling, svglite, testthat,
vdiffr, withr

Imports: EnvStats, rmutil, RSpectra, diffpriv, truncnorm, randnet,
igraph, HCD, transport

Depends: R (>= 3.5.0)
Imports: stats, Matrix, rlang, ggplot2, grDevices, patchwork, RCurl,
plyr, parallel, reshape2, MASS, scales, cowplot, minpack.lm,
lfc, labeling, methods, utils, numDeriv
Suggests: knitr, rmarkdown, circlize, Seurat, ComplexHeatmap, ggrepel,
DESeq2, S4Vectors, data.table, clusterProfiler, biomaRt,
msigdbr, fgsea, rclipboard, cubature, DT, shinyjs, shinyjqui,
RColorBrewer, gsl, htmltools, matrixStats, VGAM, quantreg,
graphics, shiny, ggrastr, viridisLite, deSolve, presto

Depends: R (>= 4.1.0)
Imports: vars, stats, rlang (>= 1.0.0), tibble, generics
Suggests: testthat (>= 3.0.0), knitr, rmarkdown

Suggests: mgcv, rgl, tcltk, MASS, stringr, testthat (>= 3.0.0)

Depends: R (>= 2.14.0),
Imports: dplyr, ggplot2 (>= 0.9.2), magrittr, RColorBrewer, tibble,
tidyr

Suggests: shinytest, testthat, datasets, grid

Imports: adegenet, ggplot2, stringr, igraph, stats, spatstat.geom,
spatstat.linnet, Matrix, vegan, utils, methods, pegas, MASS,
tidyr, sp, sf, hierfstat, rappdirs, gdistance, raster, foreign,
ecodist, Rdpack

Imports: blockmodels, igraph, parallel, sClust

Imports: BBmisc (>= 1.6), checkmate (>= 1.1), reshape2 (>= 1.4.1),
vegan, ggplot2 (>= 1.0.0), lhs, deldir, grDevices
Suggests: testthat (>= 0.9.1), knitr, rmarkdown, gridExtra, magrittr