Depends: R (>= 3.0.0)
Imports: methods, grDevices, graphics, stats, utils, colorspace,
RColorBrewer, KernSmooth, withr
Suggests: crayon, farver, knitr, rmarkdown, testthat (>= 3.0.0)
Enhances: ggplot2, ggridges, IRanges, S4Vectors, openxlsx, kableExtra,
matrixStats, viridisLite, ComplexHeatmap, circlize,
GenomicRanges, igraph, rstudioapi, Matrix, sparseMatrixStats

Depends: R (>= 4.1.0)
Imports: Rcpp (>= 1.0.10), Matrix, extraDistr, mclust, scales, aricode,
stringdist, utils, splines, rlang, future.apply, future,
progressr, progress, igraph, methods
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.1.2)
Imports: dplyr (>= 1.0.0), hms, lifecycle, lubridate, magrittr, purrr,
rlang, stringi, stringr, snakecase (>= 0.9.2), tidyselect (>=
1.0.0), tidyr (>= 0.7.0)
Suggests: dbplyr, knitr, rmarkdown, RSQLite, sf, testthat (>= 3.0.0),
tibble, tidygraph

Suggests: agridat, future, future.apply, knitr, MASS, palmerpenguins,
rmarkdown, testthat (>= 3.0.0), vdiffr (>= 1.0.0), withr

Depends: R (>= 4.1.0)
Imports: utils, httr, jsonlite, dplyr, scales, tibble
Suggests: ggplot2, testthat (>= 3.0.0), knitr, rmarkdown

Suggests: keyring (>= 1.2.0), testthat (>= 3.0.0)

Depends: R (>= 4.0.0)
Imports: rjags, R2jags, stats, graphics, ggplot2, ggExtra, MASS, grid,
gridExtra, bookdown, tidyr, kableExtra, GGally, qpdf

Imports: rJava (>= 0.5-0), grDevices, graphics

Suggests: knitr, rmarkdown, evaluate, testthat

Imports: htmltools, htmlwidgets, reactR, stringr, magrittr, readr,
jsonlite, httpuv, mime, cli, ids, dplyr
Suggests: testthat (>= 3.0.0), knitr, rmarkdown

Imports: parallel, stringr, RColorBrewer, graphics, grDevices, maps,
rworldmap, ggplot2, sp

Imports: grDevices, scales, ggplot2 (>= 3.0.0)

Imports: fs, processx, yesno, magick, glue, jsonlite

Imports: igraph, graphics, stats, utils, png, ggplot2

Suggests: knitr, rmarkdown, clonevol, testthat (>= 3.0.0)

Depends: R (>= 4.1.0)
Imports: cli, glue, httr2, purrr, rlang (>= 1.1.0), vctrs (>= 0.7.0),
xml2
Suggests: httpuv, testthat (>= 3.0.0), tibble, withr