Imports: Matrix, igraph, RANN, RSpectra, ggplot2, patchwork, gridExtra,
viridis, methods, dplyr

Suggests: knitr, rmarkdown, ggplot2, testthat(>= 2.0.0)

Depends: R (>= 3.5.0)
Imports: parallel, tiff, stats, grDevices, utils, EBImage, httr
Suggests: knitr, rmarkdown, abind, fs, R.rsp

Depends: R (>= 4.1)
Imports: dplyr, ggplot2, gridExtra, hms, magrittr, marmap, methods,
mgcv, reshape2, shiny, shinyjs, stringr, terra, tidyterra, zip
Suggests: knitr, mapproj, maps (>= 3.4.1), rmarkdown

Depends: R (>= 4.3)
Imports: digest, generics, methods, stats, utils, SummarizedExperiment,
graphics, hardhat, parsnip
Suggests: BiocParallel, splitGraph, cli, dials, FNN, future,
future.apply, ggplot2, glmnet, mice, missForest, pkgload,
ranger, randomForest, recipes, RANN, rsample, tune, VIM, withr,
workflows, xgboost, yardstick, pROC, PRROC, survival, knitr,
rmarkdown, testthat (>= 3.0.0)

Imports: rentrez, xml2, DBI, RMySQL, glue, memoise

Depends: R (>= 4.1.0)
Imports: WGCNA, mlr3, CMplot, ggsci, ROCR, caret, ggplot2, ggpubr,
viridis, ggthemes, ggstatsplot, htmlwidgets, mlr3verse,
parallel, uwot, webshot, wordcloud2,ggforce, igraph, ggnetwork

Depends: R (>= 3.1.1)
Imports: biomaRt, Biostrings, curl, tibble, jsonlite, data.table (>=
1.9.4), dplyr (>= 0.3.0), readr (>= 1.4.0), downloader (>=
0.3), RCurl (>= 1.95-4.5), XML (>= 3.98-1.1), httr (>= 0.6.1),
stringr (>= 0.6.2), purrr, R.utils, philentropy, withr, fs
Suggests: knitr (>= 1.6), rmarkdown (>= 0.3.3), devtools (>= 1.6.1),
testthat, seqinr, magrittr

Depends: R(>= 3.6)
Imports: minpack.lm, jsonlite, methods, proj4, graphics, stats, utils,
data.table (>= 1.9.8), rappdirs, sf, terra, ggplot2, ggnewscale
Suggests: knitr, rmarkdown, prettydoc, testthat, vdiffr, curl, geodata,
httr2, pkgdown, dplyr, brms, BH, RcppEigen

Imports: graphics, grDevices, gtools, nlme, stats, utils

Depends: R (>= 4.1.0)
Imports: agricolae, curl, emmeans, ggplot2, jsonlite, lattice,
multcompView, pracma, patchwork, rlang (>= 1.0.0), scales,
stringi
Suggests: covr, crayon, ggspatial, knitr, Matrix, mockery, mvtnorm,
openxlsx2, quarto, rmarkdown, testthat, vdiffr, withr
Enhances: afex, ARTool, asreml, glmmTMB, lme4, lme4breeding, lmerTest,
nlme, sommer