Depends: R (>= 3.3.0)
Suggests: nlstools, testthat, knitr, rmarkdown, DT

Depends: R (>= 4.0.0), ggplot2, lme4
Imports: graphics, igraph, MASS, Matrix, methods, Rcpp (>= 1.0.13),
stats, TMB (>= 1.9.21), utils
LinkingTo: TMB, Rcpp, RcppEigen
Suggests: breedR, INLA, emmeans, knitr, MM4LMM, rmarkdown, testthat

Depends: R (>= 2.10)
Imports: graphics, grDevices, igraph, Matrix, methods, sf, stats,
units, utils
Suggests: ggplot2, knitr, minidown, rmarkdown, spelling, testthat (>=
3.0.0)

Imports: methods, stats, graphics, survival, pls, plsRcox, Polychrome
(>= 1.5.0), viridisLite, beanplot, oompaBase

Imports: S4Vectors (>= 0.16.0), Rsamtools (>= 1.30.0), rtracklayer (>=
1.38.0), robustbase (>= 0.92-8), SummarizedExperiment (>=
1.8.0)

Imports: glmnet, Matrix, methods, parallel, doParallel, foreach,
iterators
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, xfun

Imports: RColorBrewer, ggplot2 (>= 2.2.0)

Imports: dplyr, readxl, ggplot2, stringr, plotly

Imports: mvtnorm, stats
Suggests: knitr, rmarkdown, ggplot2, testthat (>= 3.0.0)

Depends: R (>= 2.10)
Suggests: dplyr, ggplot2, knitr, purrr, rmarkdown, testthat

Depends: R (>= 3.5)
Imports: dplyr, ggplot2, Matrix, MASS, magrittr, cli
Suggests: knitr, rmarkdown, doParallel, foreach, testthat (>= 3.0.0)

Depends: R (>= 3.5)
Imports: and, cli, crayon, dplyr, glue, nnet, plu, purrr, R6, rlang,
stats, stringr, tools, twenty48 (>= 0.2.1), utils, withr
Suggests: job, rstudioapi, testthat (>= 3.0.0)

Imports: dplyr, ggplot2, ggtext, magrittr, tidyr

Depends: R (>= 4.1.0), rms, Matrix, stats, utils
Suggests: R.rsp

Depends: R (>= 2.10)
Imports: data.table, dplyr, stats, rlang, mvtnorm, fs, arrow,
checkmate, cli, gdata, glue, purrr, tibble, vroom
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: assertthat, igraph, keras, ggraph, ggplot2, aggregation,
stats, graphics

LinkingTo: Rcpp (>= 1.0.2), RcppArmadillo (>= 0.9.800)

Depends: R (>= 3.1.1)
Imports: gWidgets2, tcltk, gWidgets2tcltk, tkrplot, limma,
RColorBrewer, grDevices, graphics, stats

Suggests: ellipse, splancs, interp, MASS