Depends: R (>= 3.6.0), grDevices, graphics, stats
Suggests: MASS, ISLR2

Suggests: MASS, randomForest, ranger, testthat (>= 2.1.0), knitr,
rmarkdown, covr

Imports: XML, RCurl, methods, utils, httr

Depends: R (>= 4.0.0)
Imports: Rcpp (>= 1.0.0), stats, parallel, graphics, utils, grDevices,
MASS, runjags, rjags, coda, hypergeo, logspline
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat, R.rsp

Imports: Rcpp, abind, plyr, ggplot2, lmtest, lmodel2, np, boot

Suggests: adaptiveGPCA (>= 0.1), knitr (>= 1.16), testthat (>= 2.0.0),
markdown, rmarkdown

Depends: R (>= 2.10), ape
Imports: lazyeval, geiger, utils, data.table
Suggests: covr, knitr, rmarkdown, testthat, utf8

Depends: graphics, grDevices, stats, utils, lubridate, ggplot2

Imports: adjclust, BiocGenerics, csaw, data.table, dplyr,
InteractionSet, limma, methods, stats, SummarizedExperiment,
reshape2, testthat, rlang, HiCParser, purrr

Imports: fitdistrplus, igraph, nFactors, Rcpp (>= 1.0.2), RColorBrewer,
Rdpack

Depends: R (>= 4.0), stats,
Imports: ape (>= 5.0), cli (>= 3.0), colorspace, Rdpack (>= 0.7),
shiny, shinyjs, TreeTools (>= 2.1.0),
LinkingTo: Rcpp, TreeTools (>= 2.1.0),
Suggests: bookdown, cluster, ggplot2, hypervolume, kdensity, knitr,
MASS, parallel, phangorn (>= 2.2.1), plotly, PlotTools,
protoclust, Quartet, readxl, rmarkdown, Rcpp (>= 1.0.8), rgl,
Rogue, spelling, TBRDist, testthat (>= 3.0), Ternary (>=
1.1.2), TreeDistData (> 0.1.0), TreeSearch (>= 1.4.0), Umatrix,
vdiffr (>= 1.0.0), withr,

Imports: ggplot2, igraph, patchwork, pracma
Suggests: Seurat, gridExtra, knitr, plotly, qpdf, rmarkdown, testthat

Depends: R (>= 3.5.0)
Imports: cluster, dplyr, ggnewscale, ggparty, ggplot2, grid, gtable,
partykit, seriation, stats, tidyr, yardstick
Suggests: forcats, knitr, rmarkdown, rpart, testthat (>= 3.0.0)

Imports: colorspace, data.table (>= 1.8.8), ggplot2, grid, gridBase,
igraph, methods, RColorBrewer, shiny (>= 0.12.0)

Suggests: knitr, rmarkdown, testthat (>= 3.0.0), vdiffr, spelling,
fontquiver, showtext, sysfonts, svglite (>= 2.1.3)