Imports: ggimage, ggplot2, grDevices, hexbin, rlang, showtext, stats,
sysfonts,

Imports: seqinr, parallel, doParallel, foreach,

Imports: hexbin, graphics, FNN, grid, grDevices

Imports: httr, filelock, fs, cli, withr, curl, glue, urltools, rlang

Imports: quadprog, stats, dendextend, RColorBrewer, corpcor

Suggests: knitr, testthat, rmarkdown, readr, ggplot2

Depends: R (>= 3.0), utils, Matrix, MASS, hglm.data

Depends: R (>= 3.0), utils, Matrix, MASS, sp

Imports: cli, dplyr, httr2, memoise, prettyunits, purrr, readr,
stringr, tibble

Imports: crayon, dplyr, grDevices, lubridate, magrittr, methods, stats,
stringr, utils

Depends: R (>= 3.5.0), sf, stats, utils, MASS
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), furrr, progressr,

Depends: R (>= 3.0.2), lattice, stats, grid, latticeExtra, multcomp,
gridExtra (>= 2.0.0), graphics
Imports: reshape2, leaps, vcd, colorspace, RColorBrewer, shiny (>=
0.13.1), Hmisc, abind, Rmpfr (>= 0.6.0), grDevices, methods
Suggests: mvtnorm, car, Rcmdr, RcmdrPlugin.HH, microplot, MASS

Imports: methods, Rcpp (>= 0.12.0), rstan (>= 2.18.1), rstantools (>=
2.4.0), dplyr, ggplot2, tidyr, ggpubr, scales, deSolve, rlang
Suggests: knitr, rmarkdown, RcppParallel (>= 5.0.1), cowplot

Depends: R (>= 3.2.0), grDevices, graphics, methods, stats, utils,
surveillance (>= 1.14.0)

Imports: dplyr, purrr, tidyr, rlang, grid, ggplot2, patchwork,
grDevices, magrittr, utils

Imports: Rcpp, Rdpack, MASS, mice, progress, magic, splines2

Depends: R (>= 3.3.0), bigmemory, Matrix
Imports: utils, stats, methods, stringr, CMplot
LinkingTo: Rcpp, RcppArmadillo (>= 0.9.600.0.0), RcppProgress, BH,
bigmemory, Matrix

Depends: R (>= 2.10)
Imports: graphics, grDevices, stats, utils, ncdf4
Suggests: covr, devtools, knitr, rmarkdown, roxygen2, spelling,
testthat

Depends: R (>= 3.5.0)
Imports: restatapi (>= 0.24.0), data.table (>= 1.16.0)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: adjclust, auk, BiocGenerics, csaw, diffHic, dplyr, edgeR,
GenomeInfoDb, GenomicRanges, InteractionSet, limma, Matrix,
methods, reshape2, rlang, S4Vectors, stats,
SummarizedExperiment, utils, viridis