Imports: igraph, dplyr, stringr, WGCNA, Rfast, readr, tibble, tidyr,
magrittr, rlang, utils, stats, reticulate

Imports: collapse, data.table, foreach, parallel, doParallel, Rcpp,
lifecycle, methods

Imports: coda, dplyr (>= 1.0.0), ellipsis (>= 0.3), ggplot2 (>= 3.0),
graphics, purrr, rootSolve, rjags (>= 4-8), rlang (>= 0.4.5),
stats, tidyr (>= 1.0.2), tidyselect (>= 1.2)
Suggests: testthat (>= 3.0), fs (>= 1.5), knitr, rmarkdown, tibble,
spelling

Imports: Formula, utils, stringmagic(>= 1.2.0)
Suggests: knitr, rmarkdown, stats, graphics

Imports: stats, fastDummies, Matrix, methods, Rcpp (>= 0.12.15)

Imports: nleqslv, survival, Rcpp, data.table

Imports: graphics, grDevices, PBSmapping, raster, sp, spatstat.geom,
spatstat.linnet, spatstat (>= 2.0-0), spdep, stats, utils

Suggests: servr, rmarkdown, scales, modelsummary, knitr, tidyverse

Imports: dplyr, ggplot2, purrr, htmltools, sf, htmlwidgets, jsonlite,
leaflet, sp, stats, methods, gganimate, magick, webshot,
animation, png, grDevices, graphics

Depends: R (>= 4.1.0)
Imports: withr, parallel, pbapply, purrr, mirai, DEoptim, dfoptim,
Rcpp, Rdpack, progress, stats, lifecycle, coda
LinkingTo: Rcpp
Suggests: testthat (>= 3.0.0), cowsay, knitr, rmarkdown, DMCfun,
truncnorm, vdiffr

Imports: DALEX, dplyr, tidyr, ingredients

Imports: seqinr, ggplot2, parallel, parallelly, doParallel, foreach,
dplyr, Rdpack, reshape2

Suggests: knitr, rmarkdown, devtools, roxygen2, irlba

Imports: leaflet, plotly (>= 4.10.4), crosstalk, dplyr, ggplot2 (>=
3.5.2), htmltools, rlang (>= 1.1.6), viridisLite

Depends: R (>= 4.0)
Imports: caret, randomForest, GenomicRanges, GenomeInfoDb,
GenomicFeatures, S4Vectors, rlang,
Suggests: org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, testthat, covr, knitr,
rmarkdown

Suggests: ggplot2, testthat (>= 3.0.0), knitr, rmarkdown, haven

Depends: R (>= 4.1.0)
Imports: grDevices, graphics, stats, utils
Suggests: ggplot2 (>= 3.4.0), knitr, metafor (>= 4.0.0), rmarkdown,
testthat (>= 3.0.0)

Depends: R (>= 4.1.0)
Imports: jsonlite, processx, later (>= 1.4.4)
LinkingTo: later
Suggests: testthat (>= 3.0.0), httr2, curl, websocket, plumber, knitr,
rmarkdown