Framework for the simulation framework for the simulation of complex breeding programs and compare their economic and genetic impact. Associated publication: Pook et al. (2020) <doi:10.1534/g3.120.401193>.

Simulation, analysis and sampling of spatial
    biodiversity data (May, Gerstner, McGlinn, Xiao & Chase 2017)
    <doi:10.1111/2041-210x.12986>.
    In the simulation tools user define the numbers of
    species and individuals, the species abundance distribution and species
    aggregation. Functions for analysis include species rarefaction 
    and accumulation curves, species-area relationships and the distance
    decay of similarity.

Implements the Multi-Objective Clustering Algorithm Guided
    by a-Priori Biological Knowledge ('MOC-GaPBK') proposed by
    Parraga-Alava and others (2018) <doi:10.1186/s13040-018-0178-4>.
    The algorithm performs gene clustering using 'NSGA-II' as the
    underlying multi-objective evolutionary engine, together with
    Path-Relinking and Pareto Local Search as intensification and
    diversification strategies. Two versions of the Xie-Beni validity
    index are used as objective functions, one per distance matrix,
    so that prior biological knowledge can be incorporated through
    the second matrix.

Provides methods to analyze cluster alternatives based on multi-objective optimization of cluster validation indices. For details see Kraus et al. (2011) <doi:10.1007/s00180-011-0244-6>.

The two main functionalities of this package are creating
    mock objects (functions) and selectively intercepting calls to a given
    function that originate in some other function. It can be used with
    any testing framework available for R. Mock objects can be injected
    with either this package's own stub() function or a similar
    with_mocked_binding() facility present in the 'testthat' package.

Provides a means to mock a package function, i.e.,
    temporarily substitute it for testing. Designed as a drop-in
    replacement for the now deprecated 'testthat::with_mock()' and
    'testthat::local_mock()'.