Depends: R (>= 3.00)
Imports: Rcpp (>= 0.12.0), methods, MASS, knitr
LinkingTo: Rcpp, RcppArmadillo
Suggests: gsl (>= 1.8-3), hypergeo(>= 1.0), rmarkdown, testthat, crch,
ggplot2

Depends: R (>= 4.1)
Imports: checkmate, cli, data.table (>= 1.16.0), ggplot2 (>= 3.4.0),
methods, purrr, scoringRules (>= 1.1.3), stats
Suggests: ggdist, kableExtra, knitr, Metrics, rmarkdown, testthat (>=
3.1.9), vdiffr

Imports: Matrix, survival, pracma, foreach, doParallel, parallel, Rcpp

Imports: cli, methods, irlba, igraph, RANN, Matrix, pbapply, dplyr,
furrr, future

Suggests: lme4, knitr, rmarkdown, testthat (>= 3.0.0)

Imports: glasso, stats, grDevices, graphics
Suggests: lars

Suggests: testthat (>= 3.0.0), shinytest2, chromote, phosphoricons

Depends: R (>= 3.5.0), ggplot2, ggpubr, stats

Imports: Matrix, missMDA, mvtnorm, ohenery, pracma, quadprog, withr,
purrr, future, future.apply
Suggests: knitr, markdown, corrplot

Depends: R (>= 4.1.0)
Imports: data.table, ggplot2, ggraph, ggrepel, igraph, methods, Matrix,
patchwork, Seurat (>= 4.0), SeuratObject, stats, tidygraph,
tidyr
Suggests: AnnotationDbi, org.Mm.eg.db, org.Hs.eg.db, crayon, ggExtra,
RANN, testthat (>= 3.0.0)

Imports: Seurat, dplyr, rdist, energy, stats

Depends: R (>= 3.5.0)
Imports: dplyr, GenomicRanges, magrittr, MASS, matrixStats, mixtools,
nimble, rlang, Rsamtools, tibble, tidyr, utils
Suggests: gplots, IRanges, knitr, readr, rmarkdown, testthat (>= 3.0.0)

Imports: ggplot2, grid, scan (>= 0.61.0), stats, utils, rlang, cli

Depends: R (>= 2.10)
Imports: ggplot2, glmpca, Seurat, magrittr, dplyr, tidyr, purrr,
Matrix, Rdpack, SeuratObject, WGCNA, broom, stats, methods,
matrixStats
Suggests: renv, testthat (>= 3.0.0), vdiffr, rmarkdown, knitr, qpdf

Depends: R (>= 4.0.0)
Suggests: assertthat, circlize, cli, cluster, colorspace,
ComplexHeatmap, covr, decoupleR, dplyr (>= 1.1.0), enrichplot,
forcats, ggalluvial (>= 0.12.5), ggbeeswarm, ggdist, ggExtra,
ggh4x, ggplot2 (>= 3.4.0), ggplotify, ggrastr, ggrepel,
ggridges, ggsignif, graphics, infercnv, KernSmooth, knitr,
labeling, magrittr, MASS, Matrix, methods, Nebulosa,
org.Hs.eg.db, patchwork, pheatmap, plyr, purrr, qpdf,
RColorBrewer, rjags, rlang, rmarkdown, scales, scattermore,
Seurat, SeuratObject, sf, stringr, svglite, testthat (>=
3.0.0), tibble, tidyr, UCell, viridis, withr