Depends: R (>= 3.5.0)
Imports: neuralnet, lme4, methods, Matrix, pbmcapply, Seurat(>= 3.2.0),
RJSONIO, igraph (>= 1.2.1), jsonlite (>= 1.5), RColorBrewer (>=
1.1.2), stats
Suggests: hdf5r, rhdf5, knitr, rmarkdown, formatR

Imports: MASS, graphics, grDevices, stats, utils

Imports: graphics, seqinr, shiny, stats, utils

Depends: R (>= 4.1.0)
Imports: stats, graphics, grDevices, utils, parallel, waveslim (>=
1.8.4), EMD (>= 1.5.9), urca (>= 1.3.3)
Suggests: GPArotation, plotly, cmdstanr (>= 0.7.0), posterior (>=
1.5.0), bayesplot (>= 1.10.0), loo (>= 2.6.0), projpred (>=
2.6.0), testthat (>= 3.0.0), knitr, rmarkdown, patchwork

Depends: R (>= 3.2.0)
Imports: igraph (>= 2.2.0), Matrix, Rcpp
LinkingTo: Rcpp, RcppArmadillo
Suggests: covr, ggplot2, ggraph, knitr, ompr, ompr.roi, rmarkdown, ROI,
ROI.plugin.glpk, testthat (>= 2.1.0)

Imports: scales, rlang (>= 0.4.0)
Suggests: ggplot2, dplyr, ggrepel, testthat (>= 2.1.0), knitr,
rmarkdown, covr

Imports: ggplot2, stats
Suggests: knitr, palmerpenguins, rmarkdown, testthat (>= 3.0.0)

Suggests: pwr, parallel, knitr, rmarkdown, tinytest

Depends: R (>= 2.10)
Imports: clc, gdalUtilities, httr, jsonlite, rpostgis, sf, snakecase,
terra
Suggests: httptest2, knitr, mockery, purrr, rmarkdown, testthat (>=
3.0.0), withr

Suggests: ggplot2, knitr, rmarkdown, testthat (>= 3.0.0), tidyfst

Depends: base, graphics, stats, sf, R (>= 3.5.0)
Imports: lme4, sp, raster, ggplot2, ggforce, fasterize, reshape2,
fields, methods
Suggests: knitr, rmarkdown

Imports: MASS, glmnet, stats, Ckmeans.1d.dp

Depends: R (>= 4.2.0)
Imports: dplyr, ggplot2, ggpubr, lifecycle, methods, stats
Suggests: proxy, ppclust, blockcluster, cluster, factoextra, drclust,
tidyr, knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.4.0)
Imports: dplyr, gibble (>= 0.4.0), methods, purrr, rlang, decido,
tibble, unjoin (>= 0.1.0), grDevices, graphics, stats,
magrittr, gridBase, crsmeta (>= 0.3.0)
Suggests: covr, knitr, rmarkdown, sp, testthat (>= 2.1.0), trip, vdiffr

Depends: R (>= 4.4)
Imports: methods, cluster, Thresher, oompaBase, Polychrome (>= 1.2)
Suggests: knitr, rmarkdown, Mercator, Umpire, mclust