Imports: dplyr, ggplot2, nplr, R6, readxl, stringi, stringr, grid, png,
tools, ggrepel, lubridate, R.utils, svglite, fs, scales, rlang,
patchwork, cellranger
Suggests: knitr, qpdf, furrr, future, qs2, rmarkdown, testthat (>=
3.0.0)

Imports: dplyr, tidyr, janitor, ggplot2, locfit, purrr, stringr,
magrittr, methods, mgcv, mixdist, scam, mvtnorm, patchwork,
assertthat, Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1), rstan
(>= 2.18.1), rstantools (>= 2.4.0), boot, pROC, stats4, rlang
(>= 1.1.0)
Suggests: covr, knitr, rmarkdown, bookdown, testthat (>= 3.0.0)

Depends: R (>= 4.1.0)
Imports: dplyr, drc, forcats, ggplot2, here, janitor, kableExtra,
knitr, magrittr, openxlsx, parsnip, purrr, ranger, readxl,
rmarkdown, stats, stringr, tidyr, tidyselect, utils, workflows
Suggests: glue, htmltools, httr, jsonlite, readr, rsconnect,
shiny.fluent, tidyverse, zoo

Depends: R (>= 4.1.0)
Imports: ordinal (>= 2016-12-12), crayon, stats
Suggests: covr, testthat, tibble, vctrs, pkgdown, VGAM (>= 1.1-10)

Depends: R (>= 3.5.0), Matrix, truncnorm, splines
Suggests: testthat, knitr, rmarkdown, Hmisc

Depends: R (>= 3.0.0)
Imports: mime (>= 0.2), httpuv (>= 1.5.2), xfun (>= 0.58), jsonlite
Suggests: tools, later, rstudioapi, knitr (>= 1.9), rmarkdown

Imports: combinat, Matrix, Rdpack, stats
Suggests: qgraph

Depends: R (>= 2.10)
Imports: graphics, methods, rlang, stats, terra, utils
Suggests: kableExtra, knitr, rmarkdown, testthat (>= 3.0.0)

Suggests: callr, covr, gh, reticulate, rmarkdown, testthat (>= 3.2.0),
withr

Imports: stats, utils, methods, parallel, generics (>= 0.1.2)

Depends: QCA, admisc, methods, ggplot2, ggrepel, stargazer, R (>=
3.5.0)

Imports: cli, dplyr, glue, googledrive, jsonlite, rappdirs, tibble,
yesno

Depends: R (>= 4.0.0), methods, SeuratObject (>= 5.0.2)
Imports: cluster, cowplot, fastDummies, fitdistrplus, future,
future.apply, generics (>= 0.1.3), ggplot2 (>= 3.3.0), ggrepel,
ggridges, graphics, grDevices, grid, httr, ica, igraph, irlba,
jsonlite, KernSmooth, lifecycle, lmtest, MASS, Matrix (>=
1.5-0), matrixStats, miniUI, patchwork, pbapply, plotly (>=
4.9.0), png, progressr, RANN, RColorBrewer, Rcpp (>= 1.0.7),
RcppAnnoy (>= 0.0.18), RcppHNSW, reticulate, rlang, ROCR,
RSpectra, Rtsne, scales, scattermore (>= 1.2), sctransform (>=
0.4.1), shiny, spatstat.explore, spatstat.geom, stats, tibble,
tools, utils, uwot (>= 0.1.10)
LinkingTo: Rcpp (>= 0.11.0), RcppEigen, RcppProgress
Suggests: ape, arrow, base64enc, Biobase, BiocGenerics, BPCells,
data.table, DESeq2, DelayedArray, enrichR, GenomicRanges,
GenomeInfoDb, glmGamPoi, ggrastr, harmony, hdf5r, IRanges,
leidenbase, limma, magrittr, MAST, metap, mixtools, monocle,
presto, rsvd, R.utils, Rfast2, rtracklayer, S4Vectors, sf (>=
1.0.0), sp, SingleCellExperiment, SummarizedExperiment,
testthat, VGAM