Depends: R(>= 4.5), methods, ggplot2 (>= 4.0)
Imports: grDevices, grid, igraph, tidygraph, scales, rlang, ggrastr,
Matrix, lifecycle
Suggests: knitr, rmarkdown, testthat, ggraph, ggnewscale, patchwork,
Seurat, SeuratObject
Enhances: RedeR

Suggests: terra (>= 1.6-16), sp (>= 0.9), knitr, rmarkdown, sf, stars,
raster (>= 3.6-3), codetools, testthat (>= 3.0.0), withr, fs

Suggests: fs, openxlsx, spelling, testthat (>= 3.0.0), withr

Suggests: rmarkdown, knitr, testthat (>= 3.0.0), spelling

Suggests: curl, knitr, rmarkdown, stars, terra, testthat, tibble

Imports: jsonlite, htmlwidgets (>= 0.3.3), magrittr, methods, utils
Suggests: knitr, rmarkdown, shiny (>= 0.13), miniUI (>= 0.1.1),
rstudioapi (>= 0.6), htmltools

Depends: R (>= 3.5.0), permute, lattice, ade4, geometry
Imports: vegan, FD, randomForest, stats, ggplot2, gridExtra

Depends: R (>= 3.5.0)
Imports: fields, grDevices, graphics, igraph, stats

Imports: htmltools (>= 0.5.3), shiny (>= 1.5.0), stringr

Imports: ape, purrr, utils, ggplot2, matrixStats, patchwork, methods
Suggests: knitr, rmarkdown, ggtree, phytools, testthat, formatR

Depends: R (>= 2.10)
Imports: box (>= 1.1.3), box.linters (>= 0.10.5), box.lsp, callr, cli,
config, covr (>= 3.6.5), fs, glue, lintr (>= 3.0.0), logger,
purrr, renv, rstudioapi, sass, shiny, styler, testthat (>=
3.0.0), utils, withr, yaml
Suggests: DT, htmltools, knitr, lifecycle, mockery, rcmdcheck, rex,
rlang, rmarkdown, shiny.react, spelling

Depends: R (>= 3.0.0), graphics, stats, pso, Hmisc, network, GGally
Imports: ggplot2

Suggests: testthat (>= 2.1.0), knitr, rmarkdown, microbenchmark

Imports: parallel
Suggests: ggplot2, knitr, rmarkdown, testthat (>= 2.1.0)

Imports: utils, mvtnorm, cluster, Matrix

Suggests: knitr, rmarkdown, testthat, matrixStats

Imports: boot, broom, doParallel, foreach, iterators, parallel,
plotrix, PMCMRplus, segmented, stats, tibble, tidyr, writexl
Suggests: tcltk, tkrplot, knitr, rmarkdown

Depends: R (>= 4.0)
Imports: callr, cli, curl, desc, gert, glue, gitcreds, jsonlite,
pkgbuild, processx, rappdirs, rematch, R6, rprojroot, utils,
whoami
Suggests: asciicast, debugme, knitr, mockery, pillar, rmarkdown,
testthat (>= 3.0.0), webfakes, withr