Depends: R (>= 4.1.0)
Imports: dplyr, furrr, future, ggplot2, Matrix, minpack.lm, parallel,
parallelly, pbapply, plotly, progressr, stats, tidyr
Suggests: cmdstanr, posterior, rmarkdown, testthat (>= 3.0.0)

Imports: XML, xml2, rvest, data.table, parallel

Imports: httr, rvest, utils, magrittr, stringr

Depends: R (>= 4.1.0)
Imports: dplyr, fs, imager, magick, purrr, rlang, stringr, tibble,
utils
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)

Depends: R (>= 4.1.0)
Imports: Matrix, stats, methods, utils, reshape, igraph, graphics,
grid, cli, prettyunits, ggplot2, rlang, Rcpp (>= 1.0.8)
LinkingTo: Rcpp, RcppEigen
Suggests: testthat (>= 3.0.0), quarto, Seurat (>= 5.0.0), hdf5r,
glmGamPoi, GEOquery

Suggests: covr, knitr, rmarkdown, spelling, testthat (>= 3.1.0), withr

Suggests: MASS, RSQLite (>= 0.4-15), oligoClasses (>= 1.1.9), DBI

Depends: R (>= 3.5.0)
Imports: RCy3, formatR, dplyr, stringr, utils, grDevices

Suggests: ape, knitr, rmarkdown, testthat (>= 0.9.0)

Depends: R (>= 2.10)
Imports: Seurat, ggplot2, stringr, clustree, magrittr, Matrix, dplyr,
patchwork, colorspace, DBI

Depends: R (>= 3.60)
Imports: limma, S4Vectors, SingleCellExperiment, stats,
SummarizedExperiment, utils, uwot

Depends: R (>= 3.4.0)
Imports: cli, corrr, dplyr, ggplot2, ggrepel, glue, lifecycle,
magrittr, methods, purrr, rlang (>= 1.1.0), stats, stringr,
tibble, tidyr, tidyselect
Suggests: knitr, pkgload, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 4.1.0)
Imports: dplyr, glue, lubridate, magrittr, purrr, rio, stats, stringr,
tibble, tools, utils, writexl
Suggests: knitr, readxl, rmarkdown, spelling, testthat (>= 3.0.0)

Suggests: covr, httptest, knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 4.3.0)
Imports: cli, rlang, stringi, utils, withr
Suggests: knitr, rmarkdown, roxyglobals, testthat (>= 3.0.0)

Depends: R (>= 4.00)
Imports: dplyr, ggplot2, magrittr, spatstat.geom, crayon, ggpubr,
pbmcapply, spatstat.random, tidyr, utils, methods, proxy
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), spatialTIME, spdep

Imports: pbapply, Matrix, methods, stats, utils, MASS, scTenifoldNet,
cli, enrichR, igraph, reshape2
Suggests: testthat (>= 2.1.0)