Depends: R (>= 4.1.0)
Imports: digest, dplyr, flextable, ggplot2, officer (>= 0.3.7),
stringr, rlang, yaml
Suggests: knitr, markdown, rmarkdown, testthat

Depends: R (>= 3.60)
Imports: readr, methods, readxl, dplyr, hms, lubridate, zoo
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 3.5.0), RBesT (>= 1.8-0)
Imports: methods, Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1), rstan (>=
2.32.0), rstantools (>= 2.4.0), posterior (>= 1.5.0),
assertthat (>= 0.2.1), checkmate, Formula, bayesplot (>=
1.4.0), ggplot2 (>= 3.0.0), dplyr (>= 1.1.0), tibble, tidyr (>=
1.0.0), abind, scales, rlang (>= 0.3.0), tidyselect, utils,
stats, matrixStats, brms, lifecycle, grDevices
LinkingTo: BH (>= 1.75.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
RcppParallel (>= 5.0.1), rstan (>= 2.32.0), StanHeaders (>=
2.32.0)
Suggests: rmarkdown, knitr, testthat (>= 2.0.0), withr, mvtnorm,
vdiffr, cmdstanr (>= 0.4.0), ragg

Depends: R (>= 3.5.0)
Suggests: ggplot2, dplyr, testthat (>= 3.0.0), knitr, rmarkdown

Depends: R (>= 4.1.0)
Imports: parallel, ridge, car, glmnet, pls, sva, limma,
GenomicFeatures, BiocGenerics, GenomicRanges, IRanges,
S4Vectors
Suggests: knitr, rmarkdown, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene, TCGAbiolinks, testthat (>=
3.0.0)

Depends: SummarizedExperiment, R (>= 3.63),
Imports: caret, randomForest, methods, e1071, pheatmap, tibble, dplyr,
limma, rlang, Rdpack
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 4.1.0)
Imports: crayon, data.table, methods, Rcpp, Rhdf5lib, dplyr, readr,
Matrix
LinkingTo: Rcpp, Rhdf5lib
Suggests: sessioninfo, knitr, R.utils, rmarkdown, testthat (>= 3.0.0)

Depends: R (>= 4.0.0)
Imports: shiny, dplyr, validate, digest, data.table, ckanr, openxlsx,
lexicon, readr, readxl, tibble, aws.s3, rlang, jsonlite,
mongolite, httr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), config, DT,
shinythemes, shinyWidgets, bs4Dash, shinyjs, listviewer, RCurl,
purrr, stringr

Depends: R (>= 3.5.0)
Imports: survival, utils, flexsurv, IPDfromKM
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)