Depends: R (>= 3.0.2)
Imports: Rcpp (>= 1.0.1), lme4, CholWishart, mvtnorm, Matrix, stats,
graphics, methods, lmtest, splines, mgcv
LinkingTo: Rcpp, RcppEigen (>= 0.3.3.4.0)
Suggests: SuperLearner, MASS, tictoc, testthat, gKRLS

Imports: Biostrings, coRdon , ggplot2, seqinr, stringr
Suggests: testthat

Suggests: ape, plotrix, parallel, seqinr, gtools

Suggests: tinytest, knitr, rmarkdown, terra, sp, sf

Imports: httr, jsonlite, dplyr, askpass, stringr, mime

Depends: R (>= 4.0)
Imports: cli, dplyr, extraDistr, ggplot2, golem, knitr, lme4, magrittr,
R2BayesX, rlang, rstudioapi, shiny (>= 1.5), tibble, tidyr,
Suggests: spelling, bayesrules, coda, colorspace, cowplot, faraway,
htmlwidgets, INLA, ISLR, LaplacesDemon, magick, MASS, MCMCpack,
plotly, rmarkdown, pacman, png, spData, stringi

Imports: stats, utils, lubridate, Rcpp, foreach
Suggests: testthat (>= 3.0.0), doParallel

Imports: klaR, matrixStats, mcclust, Rcpp, stats, gtools
Suggests: doParallel, doRNG, foreach, parallel

Imports: cowplot, DT, ggplot2, grDevices, ggpubr, nlme, shiny, stats,
tidyr, utils, numDeriv, stringr, RColorBrewer, scales,
shinyWidgets
Suggests: testthat

Depends: R (>= 3.4.0)
Imports: methods, utils, RANN, Matrix, RSpectra
Suggests: scatterplot3d, knitr, rmarkdown, testthat

Suggests: rmarkdown, knitr, shinytest2, testthat (>= 3.0.0)

Depends: R (>= 4.1.0)
Imports: dplyr, httr2, jsonlite, digest, rlang, tibble, tidyr, purrr,
rvest, stats, magrittr
Suggests: dotenv, ggplot2, gt, httptest2, knitr, rmarkdown, scales,
testthat, withr

Depends: R (>= 4.1.0)
Imports: shiny (>= 1.6.0), shinyjs, shinyWidgets, config (>= 0.3.1),
golem (>= 0.3.1), JBrowseR, dplyr, tidyr, DT, ggplot2, ggpubr,
plotly, vroom, abind, reshape2, stats, utils, httr, curl,
hidecan, purrr, bs4Dash
Suggests: testthat (>= 3.0.0), rlang, pkgload, vdiffr, markdown,
shinytest

Depends: R (>= 4.1.0)
Imports: htmlwidgets (>= 1.6.0), htmltools (>= 0.5.4), jsonlite (>=
1.8.0), shiny (>= 1.7.0), DT (>= 0.27), rhandsontable (>=
0.3.8), shinyjs (>= 2.1.0), shinythemes (>= 1.2.0), stats,
utils
Suggests: haven, tibble, dplyr, knitr, rmarkdown, testthat (>= 3.0.0),
covr