Conditional Inference Trees with Stacked Multiple Imputation R package ctreeMI version 1.0.0 Implements the stacked-imputation workflow for conditional inference trees ('ctree') described in Sherlock et al. (2026) <doi:10.1080/00273171.2026.2661244>. When data contain missing values, multiply imputed datasets (e.g., from 'mice') are stacked vertically and a single 'ctree' is fit on the combined data. To correct for the artificially inflated sample size introduced by stacking, every node-level test statistic is divided by the number of imputations M, the node-level p-values are recomputed from the chi-squared reference distribution 'ctree' uses (including its multiplicity adjustment across candidate splitting variables), and the tree is compressed bottom-up (the Stack/M correction). Degrees of freedom are derived for each node and each candidate variable, so univariate, bivariate and higher-dimensional outcomes are all handled, as are unordered factor predictors, whose degrees of freedom depend on how many levels remain in a node. The result is a conservative but interpretable single tree that incorporates imputation uncertainty without requiring pooling of structurally different trees. Also exports stack_imputations(), rescale_statistic(), prune_stackM(), node_table() and report_ctreeMI() as standalone utilities. The underlying 'ctree' algorithm is provided by 'partykit' (Hothorn & Zeileis, 2015; Hothorn, Hornik & Zeileis, 2006 <doi:10.1198/106186006X133933>). Software Depends: R (>= 4.0.0) Imports: partykit (>= 1.2-0), mice (>= 3.0.0), stats, methods Suggests: testthat (>= 3.0.0) Phillip Sherlock <phillip.sherlock@ufl.edu> Comprehensive R Archive Network (CRAN) Phillip Sherlock [aut, cre] (ORCID: <https://orcid.org/0000-0003-0433-3681>) GPL (>= 3) 2026-07-27 application/tgz https://CRAN.R-project.org/package=ctreeMI doi:10.32614/CRAN.package.ctreeMI