Local Haplotype Clustering and Visualization R package crosshap version 1.4.0 A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>. Software Depends: R (>= 4.00) Imports: cli, clustree, data.table, dbscan, dplyr, ggdist, ggplot2, ggpp, gridExtra, gtable, magrittr, patchwork, rlang, scales, tibble, tidyr Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0), umap, vdiffr Jacob Marsh <jake.marsh@live.com.au> Comprehensive R Archive Network (CRAN) Jacob Marsh [aut, cre] (ORCID: <https://orcid.org/0000-0003-3734-2023>), Brady Johnston [aut] (ORCID: <https://orcid.org/0000-0001-6301-2269>), Jakob Petereit [aut] (ORCID: <https://orcid.org/0000-0003-2159-0380>) MIT + file LICENSE (https://CRAN.R-project.org/package=crosshap/LICENSE) 2024-03-31 application/tgz https://CRAN.R-project.org/package=crosshap doi:10.32614/CRAN.package.crosshap