Hidden Markov Models of Character Evolution R package corHMM version 2.8 CRAN Task View: Phylogenetics (https://CRAN.R-project.org/view=Phylogenetics) Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>. Software Depends: ape, nloptr, GenSA Imports: expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools Suggests: testthat, knitr, rmarkdown Jeremy Beaulieu <jmbeauli@uark.edu> Comprehensive R Archive Network (CRAN) Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut] GPL (>= 2) 2022-06-13 application/tgz https://CRAN.R-project.org/package=corHMM doi:10.32614/CRAN.package.corHMM