Clusters of Colocalized Sequences R package colocalized version 0.2.0 Also abbreviates to "CCSeq". Finds clusters of colocalized sequences in .bed annotation files up to a specified cut-off distance. Two sequences are colocalized if they are within the cut-off distance of each other, and clusters are sets of sequences where each sequence is colocalized to at least one other sequence in the cluster. For a set of .bed annotation tables provided in a list along with a cut-off distance, the program will output a file containing the locations of each cluster. Annotated .bed files are from the 'pwmscan' application at <https://ccg.epfl.ch/pwmtools/pwmscan.php>. Personal machines might crash or take excessively long depending on the number of annotated sequences in each file and whether chromsearch() or gensearch() is used. Software Depends: R (>= 3.0.0) Imports: foreach, doParallel, purrr, utils Stefan Golas <stefanmgolas@gmail.com> Comprehensive R Archive Network (CRAN) Stefan Golas [cre, aut] MIT + file LICENSE (https://CRAN.R-project.org/package=colocalized/LICENSE) 2019-10-18 application/tgz https://CRAN.R-project.org/package=colocalized doi:10.32614/CRAN.package.colocalized