A Framework for Coalescent Simulation R package coala version 0.7.2 Coalescent simulators can rapidly simulate biological sequences evolving according to a given model of evolution. You can use this package to specify such models, to conduct the simulations and to calculate additional statistics from the results (Staab, Metzler, 2016 <doi:10.1093/bioinformatics/btw098>). It relies on existing simulators for doing the simulation, and currently supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites mutation models by combining the simulators with the program 'seq-gen'. Coala provides functions for calculating certain summary statistics, which can also be applied to actual biological data. One possibility to import data is through the 'PopGenome' package (<https://github.com/pievos101/PopGenome>). Software Depends: R (>= 3.1.0) Imports: assertthat (>= 0.1), digest, methods, parallel, R6 (>= 2.0.1), Rcpp (>= 0.11.0), rehh (>= 3.0.0), scrm (>= 1.6.0-2), stats, utils LinkingTo: Rcpp, RcppArmadillo (>= 0.3.810.0) Suggests: abc (>= 2.0), knitr, PopGenome (>= 2.1.0), phyclust (>= 0.1-16), rmarkdown, testthat (>= 0.11.0) Dirk Metzler <metzler@bio.lmu.de> Comprehensive R Archive Network (CRAN) Paul Staab [aut], Dirk Metzler [aut, ths, cre], Jorge E. Amaya Romero [ctb] MIT + file LICENSE (https://CRAN.R-project.org/package=coala/LICENSE) 2024-03-04 application/tgz https://CRAN.R-project.org/package=coala doi:10.32614/CRAN.package.coala