Capture Hi-C Analysis Engine R package chicane version 0.1.8 Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model. Software Depends: R (>= 3.5.0), gamlss.tr, gamlss, data.table Imports: MASS, stats, foreach, doParallel, iterators, bedr, knitr, rmarkdown Suggests: testthat, GenomicInteractions, GenomicRanges, Gviz, countreg Syed Haider <Syed.Haider@icr.ac.uk> Comprehensive R Archive Network (CRAN) Erle Holgersen [aut], Olivia Leavy [aut], Olivia Fletcher [aut], Frank Dudbridge [aut], Syed Haider [aut, cre] GPL-2 2021-11-06 application/tgz https://CRAN.R-project.org/package=chicane doi:10.32614/CRAN.package.chicane