Bayesian Network Structure Learning, Parameter Learning and Inference R package bnlearn version 5.2.1 CRAN Task View: Bayesian (https://CRAN.R-project.org/view=Bayesian) CRAN Task View: GraphicalModels (https://CRAN.R-project.org/view=GraphicalModels) CRAN Task View: HighPerformanceComputing (https://CRAN.R-project.org/view=HighPerformanceComputing) Bayesian network structure learning, parameter learning and inference. This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, MMPC, Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing, Tabu Search, DirectLiNGAM) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete, Gaussian, conditional Gaussian and zero-inflated networks, along with many score functions and conditional independence tests. The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented. Some utility functions (model comparison and manipulation, random data generation, arc orientation testing, simple and advanced plots) are included, as well as support for parameter estimation (maximum likelihood and Bayesian) and inference, conditional probability queries, interventions, counterfactuals, cross-validation, bootstrap and model averaging. Development snapshots with the latest bugfixes are available from <https://www.bnlearn.com/>. Software Depends: R (>= 4.4.0), methods Suggests: parallel, graph, Rgraphviz, igraph, lattice, gRbase, gRain (>= 1.3-3), Rmpfr, gmp, glmnet Marco Scutari <scutari@bnlearn.com> Comprehensive R Archive Network (CRAN) Marco Scutari [aut, cre], Tomi Silander [ctb] GPL (>= 2) 2026-07-17 application/tgz https://CRAN.R-project.org/package=bnlearn doi:10.32614/CRAN.package.bnlearn