"Nested Partially Latent Class Models" R package baker version 1.0.4 Provides functions to specify, fit and visualize nested partially-latent class models ( Wu, Deloria-Knoll, Hammitt, and Zeger (2016) <doi:10.1111/rssc.12101>; Wu, Deloria-Knoll, and Zeger (2017) <doi:10.1093/biostatistics/kxw037>; Wu and Chen (2021) <doi:10.1002/sim.8804>) for inference of population disease etiology and individual diagnosis. In the motivating Pneumonia Etiology Research for Child Health (PERCH) study, because both quantities of interest sum to one hundred percent, the PERCH scientists frequently refer to them as population etiology pie and individual etiology pie, hence the name of the package. Software Depends: R(>= 4.3.0) Imports: rjags(>= 4-6), R2jags(>= 0.5), lubridate(>= 1.3), binom(>= 1.1), coda(>= 0.16), robCompositions(>= 2.0.3), ggplot2(>= 1.0), ggpubr(>= 0.4.0), gridExtra(>= 2.0), reshape2(>= 1.4), mgcv(>= 1.8-6), mvbutils(>= 2.7.4.1), shinyFiles(>= 0.6), shinydashboard(>= 0.5.1), stats, utils, abind Suggests: spelling, knitr, testthat, rmarkdown, covr, knitcitations, sf Zhenke Wu <zhenkewu@gmail.com> Comprehensive R Archive Network (CRAN) Zhenke Wu [cre, aut, cph] (ORCID: <https://orcid.org/0000-0001-7582-669X>), Scott Zeger [aut] (ORCID: <https://orcid.org/0000-0001-8907-1603>), John Muschelli [ctb] (ORCID: <https://orcid.org/0000-0001-6469-1750>), Irena Chen [ctb] (ORCID: <https://orcid.org/0000-0002-9366-8506>) MIT + file LICENSE (https://CRAN.R-project.org/package=baker/LICENSE) 2025-12-11 application/tgz https://CRAN.R-project.org/package=baker doi:10.32614/CRAN.package.baker en-US