Phylogenetic Methods for Multiple Gene Data R package apex version 1.0.7 CRAN Task View: Phylogenetics (https://CRAN.R-project.org/view=Phylogenetics) Toolkit for the analysis of multiple gene data (Jombart et al. 2017) <doi:10.1111/1755-0998.12567>. 'apex' implements the new S4 classes 'multidna', 'multiphyDat' and associated methods to handle aligned DNA sequences from multiple genes. Software Depends: R (>= 3.1.3), methods, ape, phangorn Imports: utils, graphics, stats, adegenet Suggests: testthat, knitr, rmarkdown Klaus Schliep <klaus.schliep@gmail.com> Comprehensive R Archive Network (CRAN) Klaus Schliep [aut, cre] (ORCID: <https://orcid.org/0000-0003-2941-0161>), Thibaut Jombart [aut], Zhian Namir Kamvar [aut], Eric Archer [aut], Rebecca Harris [aut] GPL (>= 2) 2025-07-24 application/tgz https://CRAN.R-project.org/package=apex doi:10.32614/CRAN.package.apex