Calls Copy Number Alterations from Slide-Seq Data R package SlideCNA version 0.1.0 This takes spatial single-cell-type RNA-seq data (specifically designed for Slide-seq v2) that calls copy number alterations (CNAs) using pseudo-spatial binning, clusters cellular units (e.g. beads) based on CNA profile, and visualizes spatial CNA patterns. Documentation about 'SlideCNA' is included in the the pre-print by Zhang et al. (2022, <doi:10.1101/2022.11.25.517982>). The package 'enrichR' (>= 3.0), conditionally used to annotate SlideCNA-determined clusters with gene ontology terms, can be installed at <https://github.com/wjawaid/enrichR> or with install_github("wjawaid/enrichR"). Software Imports: data.table, reshape2, dplyr, ggplot2, scales, pheatmap, cluster, factoextra, dendextend, Seurat, tidyselect, stringr, magrittr, tibble, futile.logger, mltools, utils Suggests: testthat (>= 3.0.0), enrichR (>= 3.0) Diane Zhang <dkzhang711@gmail.com> Comprehensive R Archive Network (CRAN) Diane Zhang [aut, cre] (ORCID: <https://orcid.org/0000-0002-0268-4413>), Johanna Klughammer [aut] (ORCID: <https://orcid.org/0000-0002-3628-9278>), Jan Watter [aut] (ORCID: <https://orcid.org/0000-0001-7519-731X>), Broad Institute of MIT and Harvard [cph, fnd] GPL (>= 3) 2025-01-23 application/tgz https://CRAN.R-project.org/package=SlideCNA doi:10.32614/CRAN.package.SlideCNA