Recovering Structure of Long Molecules from Structural Variation Data R package SVAlignR version 0.9.2 Implements a method to combine multiple levels of multiple sequence alignment to uncover the structure of complex DNA rearrangements. Software Depends: R (>= 4.4) Imports: methods, graphics, grDevices, oompaBase, Biostrings, NameNeedle, dendextend, ape, stringr, igraph, Polychrome, colorspace Suggests: msa, viridisLite, R.rsp, knitr, rmarkdown Kevin R. Coombes <krc@silicovore.com> Comprehensive R Archive Network (CRAN) Kevin R. Coombes [aut, cre] Apache License (== 2.0) 2025-09-24 application/tgz https://CRAN.R-project.org/package=SVAlignR doi:10.32614/CRAN.package.SVAlignR