Identify Rogue Taxa in Sets of Phylogenetic Trees R package Rogue version 2.2.1 CRAN Task View: Paleontology (https://CRAN.R-project.org/view=Paleontology) CRAN Task View: Phylogenetics (https://CRAN.R-project.org/view=Phylogenetics) Rogue ("wildcard") taxa are leaves with uncertain phylogenetic position. Their position may vary from tree to tree under inference methods that yield a tree set (e.g. bootstrapping, Bayesian tree searches, maximum parsimony). The presence of rogue taxa in a tree set can potentially remove all information from a consensus tree. The information content of a consensus tree - a function of its resolution and branch support values - can often be increased by removing rogue taxa. 'Rogue' provides an explicitly information-theoretic approach to rogue detection (Smith 2022) <doi:10.1093/sysbio/syab099>, and an interface to 'RogueNaRok' (Aberer et al. 2013) <doi:10.1093/sysbio/sys078>. Software Depends: R (>= 3.5.0) Imports: ape (>= 5.0), cli (>= 3.0), fastmatch, grDevices, matrixStats, Rdpack (>= 0.7), stats, TreeDist (> 2.2.0), TreeTools (>= 1.9.1.9003), utils, Suggests: knitr, PlotTools, rmarkdown, spelling, testthat, Martin R. Smith <martin.smith@durham.ac.uk> Comprehensive R Archive Network (CRAN) Martin R. Smith [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-5660-1727>), Andre J. Aberer [aut, cph] (RogueNaRok) GPL (>= 3) 2026-06-24 application/tgz https://CRAN.R-project.org/package=Rogue doi:10.32614/CRAN.package.Rogue en-GB