d70640f9c0fc5945f677c326eed40764 *DESCRIPTION
b234ee4d69f5fce4486a80fdaf4a4263 *LICENSE
2cb3c801e4003772fa426573a5b0256a *NAMESPACE
4ff940cb7b85cd76b3c938a58411a9d2 *NEWS.md
a2f89a03bd128d8519c665443d2b88b9 *R/AgriLand.R
560d1519578bd04014aa0a9c53590efc *R/Class-LandsepiParams.R
1de8e2eec46c3f8d6abc506b2d8560ae *R/Cultivars_List.R
ef7042527a50c9d3a1750b5116e30c75 *R/GPKGTools.R
2e55ca080dbc099aae11b2a8d067d527 *R/Math-Functions.R
4854fa6394197cfd8d0497a03037daab *R/Methods-LandsepiParams.R
95fef7ed670ab6a6018d74c0ec7faa72 *R/RcppExports.R
d7a4349a0177929611cd9993fdd03e01 *R/demo_landsepi.R
2595134fa04c6797f5b2c187d05f4f94 *R/graphics.R
82fe39852fbf16c19cf45a4eab5a12eb *R/landsepi-package.R
28e76cc34e8d976bb12a3ead437b96f8 *R/output.R
8dbc5f3ef077520a7cba830df9c9ab38 *R/runShiny.R
dfc37a5511fa7a36679971e414ba86d9 *R/simul_landsepi.R
34ab75c3c80da4c76427b2fbda65d5d5 *R/tools.R
64e3375e21d3f80ebd459829ede40fa9 *build/vignette.rds
9c15ea45e71bce8cadb1b5439bd293f4 *configure
36d1b013f6c4d8f44dae7b97bfdf6449 *configure.ac
a30c3667c4f79ea72fbdc7268798e7b4 *data/dispP_a40_b7.rda
617b550b60779a8f034f6be4efef8b91 *data/landscapesTEST.rda
1fdefcfa770d65d98a69de6bdb474d9f *inst/CITATION
4c42b7623ccbcd17ce8c0164c521e9be *inst/doc/O1-run_simple_simul.R
667f197500129941ba0a915d13e44425 *inst/doc/O1-run_simple_simul.Rmd
6484bc4923324ba097d96ea672a04178 *inst/doc/O1-run_simple_simul.html
eefafdf296130cb105ad0880e3c4caaf *inst/doc/O2-run_exp_design.R
9e8b70ff3e753ad8ceb15607fc922cf3 *inst/doc/O2-run_exp_design.Rmd
870baa7d1f3557039662878a70955159 *inst/doc/O2-run_exp_design.html
9a174bfe60986a5ea633108e9c701bb9 *inst/doc/O3-landscape_dispersal.R
7a4954c5fd629f58dd33163ff639e26a *inst/doc/O3-landscape_dispersal.Rmd
53958ad93e2721f41df2a896f57eabc8 *inst/doc/O3-landscape_dispersal.html
a02b56f292e32ca926400c70b440976c *inst/doc/O4-run_sex_repro.R
c1e37e93edc2648d269b9e7e51e6c962 *inst/doc/O4-run_sex_repro.Rmd
48efb265714b2bded633e216138065de *inst/doc/O4-run_sex_repro.html
dadc828e5a4cd7a78cc3a192d7f2e5bb *inst/doc/O5-bibliography.Rmd
6bb2f9ef6b1db1fd41e7fc1a9abdabb9 *inst/doc/O5-bibliography.html
e1b436c0d37878e5ac8eda397d1dda17 *inst/doc/landsepi_poster.Rnw
41832d5fa0d15b1ca45482c7613e41aa *inst/doc/landsepi_poster.pdf
db6411e34b34532b1807927eed719ad0 *inst/doc/list_of_parameters.Rnw
bd0a61d522b9a0e8b1f9957cff720b88 *inst/doc/list_of_parameters.pdf
c2dfd8ebeafa61b85ed2216cb6498840 *inst/shiny-landsepi/Dockerfile
0d65a2dac3d18b8ca7ee4f406915a36e *inst/shiny-landsepi/app.R
a42e5b5c2f29f7692de5a980b7d4229a *inst/shiny-landsepi/global.R
058fe684bce7471522f50feb8ed85af2 *inst/shiny-landsepi/modules/editableDT.R
1821c2015957954799f49f0c30e64da2 *inst/shiny-landsepi/server.R
01ea2e34e15dfd95b00b91d9e8cb45fd *inst/shiny-landsepi/ui.R
a246d4b4ff960109ac6402e0e118bd22 *inst/shiny-landsepi/www/2022_LogoSAVE_entier_court_bleu.png
9682b164d64930f6d71deb9c95016761 *inst/shiny-landsepi/www/CSIRO_Logo.png
4f580462744a0fe242593aa02ed2d0e6 *inst/shiny-landsepi/www/LogoINRAE_Fr_rvb_web.png
f1c6588e565ced1f384c2c52bad1a19d *inst/shiny-landsepi/www/PATHO_inra_logo.png
2305c508777fcc5b5dd3ae0646ffaa66 *inst/shiny-landsepi/www/Republique_Francaise_RVB.jpg
4a719158a12ed63c5019a0473e532b99 *inst/shiny-landsepi/www/landsepi-logo.png
0ed43fc940c2ce1841064d5efc14a91b *inst/shiny-landsepi/www/logoBIOSP.jpeg
945b60747b4b27a286f0f0ccb735e3b6 *inst/shiny-landsepi/www/script.js
6b8d5dc16ebfae2c9de0fc62cc8224f1 *inst/shiny-landsepi/www/style.css
f557d252e74e2ef9e592a28dc3cfbc64 *man/AgriLand.Rd
bfbf87ab800d6019378dd8cca2597588 *man/Cultivars_list.Rd
e2c45c1636b2cd61a3db8e73e837a135 *man/LandsepiParams.Rd
e2bcb92a1632b122fa494fbf4d2ad084 *man/allocateCroptypeCultivars.Rd
0b9c8f45bdb5c06ed73a0f537890203e *man/allocateCultivarGenes.Rd
ac015301e971843fc5d83ffc4ab0d661 *man/allocateLandscapeCroptypes.Rd
6c99b566b6941ffe0caf703caa32da9c *man/antideriv_verhulst.Rd
3b735de5c8418210450dd94532a321d9 *man/checkCroptypes.Rd
a421aadb784d386c28b8e3db1e89d33e *man/checkCultivars.Rd
48151276fa7014825eb4d3e452d36061 *man/checkCultivarsGenes.Rd
551e3b392678b8bf6211af89fa90ffe6 *man/checkDispersalHost.Rd
eb8d0c31f88e90cb46ff4541888c2a8b *man/checkDispersalPathogen.Rd
00675c77980b1e506dd599b878b28cfd *man/checkGenes.Rd
8947f273b2686ec286a1799683308a70 *man/checkInoculum.Rd
38ce87df6b38499897964857363183bf *man/checkLandscape.Rd
c65bb7f4c973025541bdc6fa480334df *man/checkOutputs.Rd
7d160d11f931db68bbfbd6f1bcfd2dba *man/checkPI0_mat.Rd
72bde0c8dffc470034e0dbd48b770ca0 *man/checkPathogen.Rd
c7eacc9255662952577351970d8401c8 *man/checkSimulParams.Rd
86546311d9ecf1076d25fbeb9650b1f7 *man/checkTime.Rd
c3c353cab0b97a89bc374e8695f60458 *man/checkTreatment.Rd
418b442a2f1698d0c4d443bfb796bb6c *man/compute_audpc100S.Rd
9e11d6d81a7dd45582bb676ac79d52bb *man/createSimulParams.Rd
5718ccc182067fc4d4ab6511ec0b2bfb *man/demo_landsepi.Rd
f0c936cd68c89064cd335db2f4795fcc *man/dispP.Rd
e4246b779deac00ab73b2323e883818f *man/epid_output.Rd
220755eb64b5c7f50347ab5c69b7b71a *man/evol_output.Rd
239871329df40eac82a87a0a28c70dd4 *man/getMatrixCroptypePatho.Rd
0f815f4269443ea4eb6cf5e0931f232d *man/getMatrixCultivarPatho.Rd
e17b493b82c6b317417f6dd59d446b69 *man/getMatrixGenePatho.Rd
c755cd3a69e5ffa41c8dcd9bd54bcc2a *man/getMatrixPolyPatho.Rd
1601b034f0036cd4dc12c0a853279196 *man/initialize-methods.Rd
9d53eca3a750ae1f26d8f2d70201299a *man/inoculumToMatrix.Rd
5ab2c1f613eb34fa684bfb62e4d1ae43 *man/invlogit.Rd
1262f4b0c10b6566d64045fd4bc12057 *man/is.in.01.Rd
007a39fcfedcb5f7a8075db09be85b7c *man/is.positive.Rd
0c2d8741d931c882b3ac8c26b9ffa39b *man/is.strict.positive.Rd
14f3696acb8323986931713939ca2be8 *man/is.wholenumber.Rd
48f964f975489bd1c3434344d158fa41 *man/landscapeTEST.Rd
9b3a2eac17899ec84e98a1d850ae9e2b *man/landsepi-package.Rd
a91ed5dd08865cfc141f73a6fd93d255 *man/loadCroptypes.Rd
002d6e484d0d383cc59a3e02507bcf5b *man/loadCultivar.Rd
1703f51adaa86ad55a0913235dbf0186 *man/loadDispersalHost.Rd
5fde076f01bf9c0e8534d36e8a1ed168 *man/loadDispersalPathogen.Rd
5eea0020ae6d40557d545ac2b06e1906 *man/loadGene.Rd
f1d13477a4cb9e5b6e3b1453609c9169 *man/loadInoculum.Rd
fdbc196f4c97450ee733d01eed135400 *man/loadLandscape.Rd
fd19d33f2f7b7f5e9446083044fb395c *man/loadOutputs.Rd
cdd2a52c4dfd50e30665e56035099645 *man/loadPathogen.Rd
a854aa41f9d600e314118ee4e760f2d7 *man/loadSimulParams.Rd
e8cd97bcb74a1ea67dc355d2637ce4e9 *man/loadTreatment.Rd
c42fedd158ecf96e7d3b5cfde54fc404 *man/logit.Rd
d98d422e5d47bde176eed8bbf8b31e30 *man/model_landsepi.Rd
6855cdaaa022757d8a1e9029bdb46dfe *man/multiN.Rd
553faf5c971029955daeed0f343758f0 *man/periodic_cov.Rd
17148cced8582d9cabf5a8b845292fee *man/plot_allocation.Rd
87c9c0219475e162026be3ee2983a090 *man/plot_freqPatho.Rd
81c1b2713e43dca7a4fc9cb8799676be *man/plotland.Rd
75a58b41052f0a4c202485f640f45893 *man/price_reduction.Rd
0f345998a7c9b1fa7637086524f4597b *man/print-methods.Rd
8853999487d94c068d63ecf2098bacdd *man/resetCultivarsGenes.Rd
ba8e50a7450a2e916b5b4235c7a23171 *man/runShinyApp.Rd
0d1971b3c942fe9809daf98a136cefad *man/runSimul.Rd
a850cb45ff64384f6d39f5f251dc18e3 *man/saveDeploymentStrategy.Rd
f9d8cfffd093ed19a4f98b0ae82ca852 *man/setCroptypes.Rd
578d6f392e58ab75e1d9abce7a670ef6 *man/setCultivars.Rd
145b5889193b83e4eddf660684bd4764 *man/setDispersalHost.Rd
e3b69b66b40ae51ed36dd39a4c14d04b *man/setDispersalPathogen.Rd
9e493f552fcad3dba824f450c5e9441c *man/setGenes.Rd
2b71a5028ed24b9440e000e636183212 *man/setInoculum.Rd
799f7e386aca057b6512612ff9b99ba1 *man/setLansdcape.Rd
b350fcf768a2bd67f380f8a0b47eec74 *man/setOutputs.Rd
dfd6613687b660024e72da1419bf8467 *man/setPathogen.Rd
98dc218c69220a667bebcec4d6d5283f *man/setSeed.Rd
b456f1d9697dbc650a069c6f017a92b7 *man/setSeedValue.Rd
4e4e38055886d948d9a8c8e164b7013c *man/setTime.Rd
1f80a70b183029a22c8c88f33d5e2781 *man/setTreatment.Rd
e2bf55e0df5c021b761f856b48e20c2c *man/show-methods.Rd
fc5c231be40b33e059bd4c5d88208905 *man/simul_landsepi.Rd
fdb508ffa06142a60aa9d3ed44ed19a7 *man/summary-methods.Rd
897f93150f7a2094b7898adfb0ed11d6 *man/survivalProbToMatrix.Rd
848d479edf6c7ae9932dc1802d6dad1e *man/switch_patho_to_aggr.Rd
c0beaac6ee83a1562b5cf272ca4f6de1 *man/updateReproSexProb.Rd
2011d938e9a010143262c4607ad21af3 *man/updateSurvivalProb.Rd
9e3e4d51d866550fddb172cae889a3ee *man/video.Rd
9105ae909239d854689f80927382789d *src/Basic_patho.cpp
1d9eb0698e6994ad4db633121deec5f8 *src/Basic_patho.hpp
354d4fd2dba6c4f51c698ac9280e33d5 *src/Croptype.cpp
2bc53d5e3519b1e3d54c7e5371d3219f *src/Croptype.hpp
bebc30b5750f0bda370a8de7d1bf7d8d *src/Cultivar.cpp
a4375f770652048c978a087e0e9ed8f6 *src/Cultivar.hpp
aabea0322eb97605cf3caea6759456bc *src/Gene.cpp
b064fcf9f8e98a0b84c0cb3c6d326603 *src/Gene.hpp
3c3d73270f60884d808cbee77bad2cc5 *src/Makevars.in
188a32c21171727fae81d7e3d45bec03 *src/Makevars.win
0a94b1d6bc3e0128296b597d2f01ba90 *src/Model.cpp
2920a6e8d730b4d4bc491b9065710fba *src/Model.hpp
40d3255b87b91152a330a6b27a04bfef *src/RcppExports.cpp
16b30c362a19f910b6c9f67dfa5468c5 *src/Treatment.cpp
f9e9b76acf7ffe58810d6f2c3299e800 *src/Treatment.hpp
0e5067f0f83137353ccb3f37559f5cfc *src/functions.cpp
851ee4bfe5b6980c22dc68746df30980 *src/functions.hpp
b49d5dbcfee99265f5d73dc67bba57f9 *src/gprof.cpp
e55f9cf72903a85af07b7ebe68bf35a1 *src/initialisation.cpp
6703927fc2892be2955eff1716f787d8 *src/printReadWrite.cpp
2465aed543f87fb407cd5fad104699e7 *src/printReadWrite.hpp
a45ed9d75d2d6949a99fa58c11ef7517 *tests/testthat.R
216faaa52126b06859a8ba588b03e724 *tests/testthat/test-LandsepiParams-Method.R
27b49d78b81b50d1c0114325db3eb5ed *tests/testthat/test-invlogit.R
312cd1e10fb5392d77acc161581ac83d *tests/testthat/test-logit.R
d385d0c965a08ecdec4e59c86bda9b00 *tests/testthat/test.shp
0da039c41ba7da342c85fe9531e1df8c *tests/testthat/test.shx
f77085ee6021864661940dcb3623b51e *tools/winlibs.R
667f197500129941ba0a915d13e44425 *vignettes/O1-run_simple_simul.Rmd
9e8b70ff3e753ad8ceb15607fc922cf3 *vignettes/O2-run_exp_design.Rmd
7a4954c5fd629f58dd33163ff639e26a *vignettes/O3-landscape_dispersal.Rmd
c1e37e93edc2648d269b9e7e51e6c962 *vignettes/O4-run_sex_repro.Rmd
dadc828e5a4cd7a78cc3a192d7f2e5bb *vignettes/O5-bibliography.Rmd
80388bfadca2f81f22664a7acaecebf4 *vignettes/landsepi.bib
e1b436c0d37878e5ac8eda397d1dda17 *vignettes/landsepi_poster.Rnw
aa38f38b5f2bc8f6f939d3529e28e32d *vignettes/landsepiposter.pdf
db6411e34b34532b1807927eed719ad0 *vignettes/list_of_parameters.Rnw
6deabcd8a96caa95ab3895a64157db84 *vignettes/listofparameters.pdf
