002331dfbe45bc9cd23f9376e75ed97f *DESCRIPTION
9de720dc07610c81e33e54e2d306baf9 *NAMESPACE
276fa9a63f25eb682faf4aff8653b956 *R/01-cipher.R
43e5ab68e76d22eb81064995580a9790 *R/02-needelman.R
7de2ccc12660a7fe16199459baf3a545 *R/03-svalign.R
c49cd72806f8b3064ccdda555d28b9c8 *R/04-KMers.R
106f8e480ef7f32dc9ba98ef252a27f8 *R/05-stringGraph.R
f338e080fd98078f40f3e8872f6ac7dd *R/06-breakpoints.R
ad15be8e8792b16c918d8f99032b7385 *R/07-debruijn.R
d6e9c30d0d386e6cf643e77ca8e74a9a *TODO
b5c1fbe3663370b3ec4102b9fa6632b4 *build/vignette.rds
40897218a6fac4fa91f3eb02074c6b7d *data/breakpoints.rda
a6c212ceddae3c7ec0d2b1f4343aad5c *data/longreads.rda
119fe0d9cdccc2fedf1e14c337bae764 *inst/doc/SVAlignR.html
8aca24a9902646417dcb5f6bd0196245 *inst/doc/SVAlignR.html.asis
024dfb69c0a4f7b08cc9f9ada589490c *inst/vignette-source/SVAlignR.Rmd
ca70e61d7396801ee48fc3e4d731fb38 *inst/vignette-source/test-03-align.R
a61c512e531a35d39505c26e9e6df675 *inst/vignette-source/test-03-align.Rout.save
a90c9f4e10a1b4fe9cab54144b99e346 *man/00-datasets.Rd
2d3f1f7e2cb6af837d21ee2a3c7fc8b4 *man/01-cipher.Rd
e5676b6a423db43adf63d4b1c4a33a8d *man/02-seqclust.Rd
ddd6781a9e51784cc1111da8ec7410a7 *man/03-align.Rd
b6c1f30abc8ed5ec9b8c38ee189c0ff1 *man/05-stringGraph.Rd
530cbb9d293f5c56fb73962ec11c24b0 *man/06-words.Rd
35f56d264aaf20c959e4eef0bd180d91 *man/07-breakpoints.Rd
42171fd8d1c61dfa6d53e366c0def458 *man/08-debruijn.Rd
57e6092aada7786a0ee6209fe2ea9322 *tests/test-01-cipher.R
160a446b0e5c56dd8bda69d168e49d6b *tests/test-01-cipher.Rout.save
9d0dfa0c0624b482464fe301083dde90 *tests/test-02-seqclus.R
d3ff746072795be54ce02df7f8687e2d *tests/test-02-seqclus.Rout.save
06eceb6b8762d6bc6b7f70ac3bda6adb *tests/test-04-sg.R
884ea858b21b53e55f1ba55f31e41550 *tests/test-05-words.R
7baf1afa796b83a604e8c5226b3874f8 *tests/test-05-words.Rout.save
8aca24a9902646417dcb5f6bd0196245 *vignettes/SVAlignR.html.asis
