4bdbd50d21f800573d39380e4a1fda0d *DESCRIPTION
2b1d742874d672044906478e4487a8a4 *NAMESPACE
5218e30c314a449b205fa6c138f4b536 *NEWS.md
6405ad00a8c28d1f03675e5b5d40887a *R/Imperial-model-params.R
7530e18a65adaaa20540cf8922c54d06 *R/Imperial-ode.R
e461bc6ba204f675788ad84029c10265 *R/PN-auxiliary.R
fde83413aa383c07f5be5175b3fa0e23 *R/PN-epi-node-decoupled-P.R
7bbd722a6210427f34d75f17efa67bb5 *R/PN-epi-node-decoupled-T.R
cbd1283e48a1e5286722d168670418ca *R/PN-epiSEIR-network-P.R
1a0cf1219b2fc1ac9559b831970cdf86 *R/PN-epiSEIR-network-T.R
a234ca7143b1ca77aec1bd9d5ae138c4 *R/PN-epiSEIR-node-P.R
56e84c8a2685b74765b95de7b4c95ed7 *R/PN-epiSEIR-node-T.R
68958ddd57d6601cfdeb2586d63cae8c *R/PN-epiSIS-network-P.R
3798633197c175b4bcef5965b032cfc7 *R/PN-epiSIS-network-T.R
86355154fbf618bb1fae075b623f8b91 *R/PN-epiSIS-node-P.R
30d7021048567167de0f4163752cfba4 *R/PN-epiSIS-node-T.R
01de0bb863fe46740b8923f9d0ac0e8b *R/PN-lifecycle-network-P.R
b04d52a0699d153b2ae9141111942e5e *R/PN-lifecycle-network-T.R
f570b8d43beaa716191384c285a82c9e *R/PN-lifecycle-node-P.R
169b003b3ed4faec4be555db834b55a2 *R/PN-lifecycle-node-T.R
1b1745aebbcec6afc335c63bc64efd25 *R/PN-matrix.R
a64f8bc6720477b66903b31f6b39106c *R/auxiliary-analysis.R
a017b754cb4263a0136d82bd3e188eb9 *R/auxiliary-batch.R
95815d94071bbe5c5f47d63912fff91f *R/auxiliary-internal.R
d680891233cdee834298d41c799d16b3 *R/auxiliary-plot.R
dab6f0059e8495891460b1e4e545c548 *R/auxiliary-tracking.R
b60ae8803a8a0a25407a546eb55efdc2 *R/data.R
9009a9b0b71d1682e62abdab26e03c74 *R/equilibrium-auxiliary.R
0c8ab75293a45146e75ebd99724f057b *R/equilibrium-epi-decoupled.R
8075b789a161dcaf3370e990193872a8 *R/equilibrium-epiImperial.R
5746d0e3b215c8711552b44f19977eb0 *R/equilibrium-epiSEIR.R
5adb71da87fdc9c25a8144a650b9d091 *R/equilibrium-epiSIS.R
e51ddf088b2deacdff5cc4d8c1fb5196 *R/equilibrium-lifecycle.R
78b7ff9e07357557b292eb73c744cb5c *R/hazard-auxiliary.R
4e73146a576c1b35d7e5f7fcc797c0f1 *R/hazard-functions-human.R
e4226d2c3937edc90322afc415f36e7c *R/hazard-functions-mosy.R
bd9d2c686c5395904b1a61fc8130f6c6 *R/hazard-main-decoupled.R
4656427e6d2ebc45f4a2d06007c6a773 *R/hazard-main.R
055f3f5d8ee1e4a71fc6c0a5ac5083dd *R/human-SIS-ode-decoupled.R
562917fef96a8cb671a559af7ec79472 *R/interventions.R
56e4e4165155313af37335b686dbca0a *R/sampling-CLE.R
bbc87d835924d95d7c3b5e05cf7e2750 *R/sampling-DM.R
5f2b3127824786cfe6239c0d3e7f5b9b *R/sampling-ODE.R
99b2be2adae6c763e40ce13b7f5cf75e *R/sampling-PTS-decoupled.R
975e51162991d2965e7bdfd2dc58b0f4 *R/sampling-PTS.R
1a208147d2f28fa2b92624fe1dc85ffc *R/sampling-trajectory-CSV.R
a77b9dd9f9baa26b3be262140b47ea73 *R/sampling-trajectory-R-decoupled.R
b1f79063d968b6e0f8921191450581c5 *R/sampling-trajectory-R.R
06edd15a02e9382d099fa5438de31bc9 *R/sampling-trajectory-decoupled-CSV.R
19e89eab23f01904e0ffef86006b98fe *R/zzz.R
251af50a1f36c3524dbc4cfd253b5718 *README.md
7cd7ca0b60451f8252d7590c17b53803 *build/vignette.rds
a99c264bdc998d3878512a9e46b4c3c1 *data/mu_ts.rda
d6d1252c20048a24874f2ec53478e912 *inst/doc/advanced_topics.R
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369eebdcdc3de8bdb20dc3f2e82735f0 *inst/doc/epi-SEIR.R
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4210fb58170012c4b760f269053fd24d *inst/doc/epi-SEIR.html
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db7b84ad2a2b25040d498e092a9ee149 *inst/doc/epi-node-Imperial-decoupled.R
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2877044b1a6e22a17a37afeb7a62b3c0 *inst/doc/epi-node-SIS-decoupled.R
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164debfda644b5294099321680e798f3 *inst/doc/inhomogeneous.R
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6afb5a71a25858596a437aa4523460dc *inst/doc/lifecycle-network.R
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c24e404b6c2de5000fadc23bb3f39905 *inst/doc/lifecycle-node.html
2c7b7e2d2342a2f4fa0d4896ee48e3c4 *man/add_interventions.Rd
5db429d8ab537eb5803d13439ee6f63d *man/base_MQ.Rd
1a78fd66d66d7378e0708dad726d5e49 *man/base_MUH.Rd
1e6bece03421f55ad0b08a5f367cee33 *man/base_aquatic_geno.Rd
1697760f70817c1d9621193306aaa09d *man/base_aquatic_stage.Rd
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2e067415dc4e7f456d7cfaa91c12f915 *man/base_erlang_F.Rd
25461c1944bfc18ba8e57194053a5bd4 *man/base_gen.Rd
7c6a1495ae625169c337fff021e4c1ea *man/base_gen_FE.Rd
662a91e6647bb4c97f9c59440c257f4b *man/base_sum_F.Rd
23c7c91390a63bc759c8127f3580ad0d *man/base_summarize_humans.Rd
26480c36cb4e48a89494c1dd11d873c1 *man/batch_migration.Rd
60bb8aba7ea2453423a9c167d176c206 *man/batch_migration_stage.Rd
30b5a7ab5c214e77bbb38a096f3eba11 *man/calc_move_rate.Rd
2661ccb834cc5335009ccc49761f8b44 *man/convert_prevalence_to_eir.Rd
0712486843f36e206f1c9879987a8ac0 *man/equilibrium_Imperial_decoupled.Rd
8d7f2a1f753490e654e85b10ddb72d22 *man/equilibrium_Imperial_decoupled_human.Rd
ba785bc714dd12d1a445e08755d5942f *man/equilibrium_SEI_Imperial.Rd
6b19391998d621dac571b74f2a089010 *man/equilibrium_SEI_SEIR.Rd
e1d241c88fae106454d2213bc9915f63 *man/equilibrium_SEI_SIS.Rd
7b01e9b8fa87adca5c71a2d13d0fb92f *man/equilibrium_SEI_decoupled_human.Rd
4e3a68ec7e6434ae0d809219bed22733 *man/equilibrium_SEI_decoupled_mosy.Rd
4566c99b2fe00d4b9ff055f184d5247c *man/equilibrium_lifeycle.Rd
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2a3a72daf34cd8741f4e779476ed73c7 *man/human_Imperial_ODE.Rd
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9034dddb551a9013c27cde1c5f5c1968 *man/make_Q_Imperial.Rd
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52d159a74e5bb3fb312e8c7949e67705 *man/movement_prob2rate.Rd
cbbd9b81407e830499117bde4091dbf9 *man/mu_ts.Rd
2665829922e1eb53c90d7b3bfb720c68 *man/sim_trajectory_CSV.Rd
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23c8e2d607349240827e8a129f673238 *man/sim_trajectory_base_R_decoupled_SIS.Rd
4b40683a593866e0a0d34d7fba73b6fb *man/solve_muAqua.Rd
bacf9bb675844ceb08ccf886247baddc *man/split_aggregate_CSV.Rd
375c0da6cd6f932f00bbd08e6f3894d5 *man/split_aggregate_CSV_decoupled.Rd
38087c2eb231b566e49f4466e600a901 *man/spn_P_epiSEIR_network.Rd
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669477b909ccd8ae5bcaa0e71d7e4840 *man/spn_P_lifecycle_network.Rd
9697a7a1f5854a6d089be88bda702826 *man/spn_P_lifecycle_node.Rd
cc2a16314f28b3beaea34a955191b5d6 *man/spn_Post.Rd
593b6f110c20e2cb08a164adffe10e56 *man/spn_Pre.Rd
4e7a1456b69e044abeece6372dcaba48 *man/spn_S.Rd
1e6c3cf234f4cc83dd7ff8382979ce4f *man/spn_T_epiSEIR_network.Rd
8f87b4b6143944a6f4631e108a3745de *man/spn_T_epiSEIR_node.Rd
84087b6a89dce7cc772b08adcd9004a2 *man/spn_T_epiSIS_network.Rd
acbb691876fa554e3608758c8e17d9e4 *man/spn_T_epiSIS_node.Rd
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f8ee8c1445217fb937c6bb8a3e0d97e4 *man/spn_T_lifecycle_node.Rd
0a86a5f80aa82fa4bd3e3e268c4b2965 *man/spn_hazards.Rd
907a40d5d1c70287f717659441c95624 *man/spn_hazards_decoupled.Rd
2292b273c33571147c972a0d6e86759e *man/step_CLE.Rd
b4c6fa4bf838e4c1f709d9e9ec01ea33 *man/step_DM.Rd
bc3665dc082e78d98b132fa00a3344a1 *man/step_ODE.Rd
c3d6f65b8f98a10d5be7d3159b5a77fd *man/step_ODE_decoupled.Rd
0fea33736f8ba2d041323cafb4c1a3b5 *man/step_PTS.Rd
8062407a8cdeb662ca3c3204912db169 *man/step_PTS_decoupled.Rd
f1bdf3e1d6e581adfc06c9eb78c5a4e7 *man/summarize_eggs_geno.Rd
317301ec40740b3566fe9d0f58c4777d *man/summarize_eggs_stage.Rd
1f6f744b98fc77120be34d1350ff72b0 *man/summarize_females.Rd
ae69a41612ee5445f4b73edbd788a7be *man/summarize_females_epi.Rd
a22c2ae1a0e29b2d692712ae0c28a948 *man/summarize_humans_epiImperial.Rd
c5f6c5265993124265fd409d16b84bbc *man/summarize_humans_epiSEIR.Rd
8bca9ac86a9d00294bf6441d30ef445d *man/summarize_humans_epiSIS.Rd
6382480c90ff1ccb8ae7d2cd6b06d5d1 *man/summarize_larvae_geno.Rd
347668283b5f30236e2134377164446e *man/summarize_larvae_stage.Rd
3c81d94ad05905a433eeae473d24604f *man/summarize_males.Rd
a7558c20eae362a7f36419b6a23ad157 *man/summarize_pupae_geno.Rd
5afa25340cf4e6d23b30ca3d0955dcd7 *man/summarize_pupae_stage.Rd
89cda3dac565612fe26cf7c3fbb2f6fa *man/summarize_stats_CSV.Rd
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7bf825679bbb1afd0f9f3a658a112a01 *man/track_hinf.Rd
c992f11783acc31e663cbb86bb922637 *vignettes/advanced_topics.Rmd
c9b52e4e2960567d33a92732ca9e6e34 *vignettes/epi-SEIR.Rmd
b24c0cb7ccf19e344829b72788036b6f *vignettes/epi-network.Rmd
edbecf2287ec1d019b512295c21c93af *vignettes/epi-node-Imperial-decoupled.Rmd
924b79f5d73fb2a6f48619ae68f387e2 *vignettes/epi-node-SIS-decoupled.Rmd
302ce5967245f7a3a6ecb747b5b496e2 *vignettes/epi-node.Rmd
2ccd2156a1f55ff07f66e669e3550a02 *vignettes/inhomogeneous.Rmd
699e7aa10c35708f47cd420b59c122f3 *vignettes/lifecycle-network.Rmd
33160bb4b6902d4e03ed022ea06e7984 *vignettes/lifecycle-node.Rmd
