Last updated on 2026-08-01 05:56:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.10 | 31.02 | 567.52 | 598.54 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.10 | 19.50 | 368.09 | 387.59 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.2.10 | 52.00 | 555.88 | 607.88 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.10 | 20.00 | 304.23 | 324.23 | ERROR | |
| r-devel-windows-x86_64 | 0.2.10 | 35.00 | 479.00 | 514.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.10 | 29.09 | 510.34 | 539.43 | OK | |
| r-release-linux-x86_64 | 0.2.10 | 29.53 | 508.08 | 537.61 | OK | |
| r-release-macos-arm64 | 0.2.10 | 7.00 | 124.00 | 131.00 | OK | |
| r-release-macos-x86_64 | 0.2.10 | 20.00 | 566.00 | 586.00 | OK | |
| r-release-windows-x86_64 | 0.2.10 | 33.00 | 491.00 | 524.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.10 | 7.00 | 112.00 | 119.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.10 | 20.00 | 287.00 | 307.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.10 | 48.00 | 690.00 | 738.00 | OK |
Version: 0.2.10
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
tidySEM/tests/testthat/test-openmx_binary.R (.Dim: 4)
tidySEM/tests/testthat/test-openmx_ordinal.R (.Dim: 1)
tidySEM/tests/testthat/test-openmx_ordinal_and_cont.R (.Dim: 2)
tidySEM/tests/testthat/test-openmx_ordinal_methods.R (.Dim: 4, .Dimnames: 2)
tidySEM/inst/doc/Plotting_graphs.R (.Label: 3)
'.Dim' should be changed to 'dim'.
'.Dimnames' should be changed to 'dimnames'.
'.Label' should be changed to 'levels'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.2.10
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0SKntg’ ‘~/tmp/scratch/Rtmp0YWdY3’
‘~/tmp/scratch/Rtmp18oxDw’ ‘~/tmp/scratch/Rtmp1TEArI’
‘~/tmp/scratch/Rtmp1fI5oX’ ‘~/tmp/scratch/Rtmp1foIoh’
‘~/tmp/scratch/Rtmp1jkWOI’ ‘~/tmp/scratch/Rtmp1uZYN3’
‘~/tmp/scratch/Rtmp2C1rxb’ ‘~/tmp/scratch/Rtmp2LR72d’
‘~/tmp/scratch/Rtmp3ZSkLu’ ‘~/tmp/scratch/Rtmp3cqKjg’
‘~/tmp/scratch/Rtmp3sro3L’ ‘~/tmp/scratch/Rtmp4MiRJK’
‘~/tmp/scratch/Rtmp4PDRec’ ‘~/tmp/scratch/Rtmp4pdkQD’
‘~/tmp/scratch/Rtmp5KKrsL’ ‘~/tmp/scratch/Rtmp5rEmwU’
‘~/tmp/scratch/Rtmp5uVCzU’ ‘~/tmp/scratch/Rtmp5vpgfi’
‘~/tmp/scratch/Rtmp5x0GC6’ ‘~/tmp/scratch/Rtmp6zTB9R’
‘~/tmp/scratch/Rtmp7JiZTM’ ‘~/tmp/scratch/Rtmp7KT8yo’
‘~/tmp/scratch/Rtmp7yJOuP’ ‘~/tmp/scratch/Rtmp84nPqH’
‘~/tmp/scratch/Rtmp8Hykgr’ ‘~/tmp/scratch/Rtmp8QYLlH’
‘~/tmp/scratch/Rtmp8qZwkK’ ‘~/tmp/scratch/Rtmp9EWvPA’
‘~/tmp/scratch/Rtmp9ooavM’ ‘~/tmp/scratch/RtmpAG9H64’
‘~/tmp/scratch/RtmpARDVWd’ ‘~/tmp/scratch/RtmpB2Zypi’
‘~/tmp/scratch/RtmpB6RMbM’ ‘~/tmp/scratch/RtmpBKe2V0’
‘~/tmp/scratch/RtmpBPXBnR’ ‘~/tmp/scratch/RtmpBueISP’
‘~/tmp/scratch/RtmpCBCgob’ ‘~/tmp/scratch/RtmpCNKsZV’
‘~/tmp/scratch/RtmpCWBFTf’ ‘~/tmp/scratch/RtmpCpdXzM’
‘~/tmp/scratch/RtmpDc7pPk’ ‘~/tmp/scratch/RtmpDjILyV’
‘~/tmp/scratch/RtmpEidSlm’ ‘~/tmp/scratch/RtmpFXzb0n’
‘~/tmp/scratch/RtmpFd0jri’ ‘~/tmp/scratch/RtmpGvQA5I’
‘~/tmp/scratch/RtmpH6DYUW’ ‘~/tmp/scratch/RtmpHfInfQ’
‘~/tmp/scratch/RtmpI2Z7Lg’ ‘~/tmp/scratch/RtmpIeaEmR’
‘~/tmp/scratch/RtmpIkxqS6’ ‘~/tmp/scratch/RtmpIq9eWe’
‘~/tmp/scratch/RtmpIyzNA0’ ‘~/tmp/scratch/RtmpJ9Mo0s’
‘~/tmp/scratch/RtmpJSvER7’ ‘~/tmp/scratch/RtmpJyZze5’
‘~/tmp/scratch/RtmpK4iwY8’ ‘~/tmp/scratch/RtmpK5Pwc6’
‘~/tmp/scratch/RtmpL8N3zz’ ‘~/tmp/scratch/RtmpLpPy8K’
‘~/tmp/scratch/RtmpLwZbTw’ ‘~/tmp/scratch/RtmpMDtPS4’
‘~/tmp/scratch/RtmpMvtGZY’ ‘~/tmp/scratch/RtmpNgQdXa’
‘~/tmp/scratch/RtmpONyBbj’ ‘~/tmp/scratch/RtmpOTcGQB’
‘~/tmp/scratch/RtmpOtPulm’ ‘~/tmp/scratch/RtmpPxGMsA’
‘~/tmp/scratch/RtmpQkwK8N’ ‘~/tmp/scratch/RtmpQnR6X6’
‘~/tmp/scratch/RtmpRKlwRs’ ‘~/tmp/scratch/RtmpRWd8uI’
‘~/tmp/scratch/RtmpRvXmOw’ ‘~/tmp/scratch/RtmpS6Fk2m’
‘~/tmp/scratch/RtmpSxT8Ov’ ‘~/tmp/scratch/RtmpTBv8gs’
‘~/tmp/scratch/RtmpTFHE5h’ ‘~/tmp/scratch/RtmpTdVqzx’
‘~/tmp/scratch/RtmpTfUEoY’ ‘~/tmp/scratch/RtmpTgA7o0’
‘~/tmp/scratch/RtmpUexcRB’ ‘~/tmp/scratch/RtmpV7VMRE’
‘~/tmp/scratch/RtmpVQZaRO’ ‘~/tmp/scratch/RtmpVY5dDv’
‘~/tmp/scratch/RtmpW7p2aV’ ‘~/tmp/scratch/RtmpWKpRtc’
‘~/tmp/scratch/RtmpWNF66c’ ‘~/tmp/scratch/RtmpWRQQy5’
‘~/tmp/scratch/RtmpWf6SlM’ ‘~/tmp/scratch/RtmpXpoIlf’
‘~/tmp/scratch/RtmpY14Hkl’ ‘~/tmp/scratch/RtmpYHnDkF’
‘~/tmp/scratch/RtmpYM1Vut’ ‘~/tmp/scratch/RtmpZQwj2B’
‘~/tmp/scratch/Rtmpa7nZiJ’ ‘~/tmp/scratch/RtmpaG9C3S’
‘~/tmp/scratch/Rtmpb6XUt7’ ‘~/tmp/scratch/RtmpbiPQby’
‘~/tmp/scratch/Rtmpc3MuNr’ ‘~/tmp/scratch/RtmpcXX0hp’
‘~/tmp/scratch/Rtmpe7BQ2K’ ‘~/tmp/scratch/RtmpePC3Zp’
‘~/tmp/scratch/RtmpeeqlIm’ ‘~/tmp/scratch/RtmpehK8rx’
‘~/tmp/scratch/Rtmpf3oNCj’ ‘~/tmp/scratch/Rtmpf4VlIz’
‘~/tmp/scratch/RtmpfPNlDR’ ‘~/tmp/scratch/Rtmph3S5n7’
‘~/tmp/scratch/Rtmph5HHk1’ ‘~/tmp/scratch/RtmphNoSGX’
‘~/tmp/scratch/RtmphdphHm’ ‘~/tmp/scratch/Rtmphq2fWv’
‘~/tmp/scratch/Rtmphs9CTa’ ‘~/tmp/scratch/RtmpiJmUzf’
‘~/tmp/scratch/RtmpiLMrB2’ ‘~/tmp/scratch/RtmpiVn6kA’
‘~/tmp/scratch/RtmpjC46iC’ ‘~/tmp/scratch/RtmpjPKfsz’
‘~/tmp/scratch/RtmpjaziC6’ ‘~/tmp/scratch/RtmpjdMYyH’
‘~/tmp/scratch/Rtmpjqzbw5’ ‘~/tmp/scratch/RtmpjsnYN4’
‘~/tmp/scratch/Rtmpk728e6’ ‘~/tmp/scratch/RtmpkAmHwe’
‘~/tmp/scratch/RtmpkESVA7’ ‘~/tmp/scratch/RtmpkyFuzd’
‘~/tmp/scratch/RtmpkztbVN’ ‘~/tmp/scratch/Rtmpl1R3P4’
‘~/tmp/scratch/Rtmpl51FYl’ ‘~/tmp/scratch/RtmplNxdaF’
‘~/tmp/scratch/RtmpmwzUTz’ ‘~/tmp/scratch/Rtmpn6r80C’
‘~/tmp/scratch/RtmpnFp2dC’ ‘~/tmp/scratch/RtmpnPEolh’
‘~/tmp/scratch/RtmpnwsxC3’ ‘~/tmp/scratch/RtmpofZhn0’
‘~/tmp/scratch/Rtmpp95rYX’ ‘~/tmp/scratch/RtmppNluoT’
‘~/tmp/scratch/RtmppxYRXJ’ ‘~/tmp/scratch/RtmpqJexGD’
‘~/tmp/scratch/RtmpqdlmNc’ ‘~/tmp/scratch/RtmprgZdb8’
‘~/tmp/scratch/RtmprwvjcQ’ ‘~/tmp/scratch/RtmpsVPgsQ’
‘~/tmp/scratch/Rtmpu3fJTD’ ‘~/tmp/scratch/RtmpuKF0RG’
‘~/tmp/scratch/RtmpuWa9HU’ ‘~/tmp/scratch/RtmpvCDhdI’
‘~/tmp/scratch/RtmpvQ8dCy’ ‘~/tmp/scratch/RtmpvY03Kv’
‘~/tmp/scratch/RtmpvqXQPF’ ‘~/tmp/scratch/Rtmpvwilkj’
‘~/tmp/scratch/RtmpwVVGFL’ ‘~/tmp/scratch/Rtmpwc5aBo’
‘~/tmp/scratch/RtmpweLeCL’ ‘~/tmp/scratch/RtmpwgnzSG’
‘~/tmp/scratch/RtmpxhV8SG’ ‘~/tmp/scratch/Rtmpxng93q’
‘~/tmp/scratch/Rtmpy9K0Mp’ ‘~/tmp/scratch/RtmpyCS6n0’
‘~/tmp/scratch/RtmpyI5w5q’ ‘~/tmp/scratch/RtmpyIrCgm’
‘~/tmp/scratch/Rtmpz4NcUc’ ‘~/tmp/scratch/RtmpzEXAlJ’
‘~/tmp/scratch/RtmpzVTNSX’ ‘~/tmp/scratch/Rtmpzbm2YB’
‘~/tmp/scratch/xvfb-run.0ibBNR’ ‘~/tmp/scratch/xvfb-run.1jnxtt’
‘~/tmp/scratch/xvfb-run.2XM1qG’ ‘~/tmp/scratch/xvfb-run.3wZHqZ’
‘~/tmp/scratch/xvfb-run.47t1g3’ ‘~/tmp/scratch/xvfb-run.7er3kb’
‘~/tmp/scratch/xvfb-run.8pwbdH’ ‘~/tmp/scratch/xvfb-run.94M2Nk’
‘~/tmp/scratch/xvfb-run.9EZKP4’ ‘~/tmp/scratch/xvfb-run.AEp1z2’
‘~/tmp/scratch/xvfb-run.BMsRMx’ ‘~/tmp/scratch/xvfb-run.Bjc6lI’
‘~/tmp/scratch/xvfb-run.EaDfbS’ ‘~/tmp/scratch/xvfb-run.EcgvvV’
‘~/tmp/scratch/xvfb-run.EgDWeN’ ‘~/tmp/scratch/xvfb-run.F1MafR’
‘~/tmp/scratch/xvfb-run.GYgHHi’ ‘~/tmp/scratch/xvfb-run.Gbwmgr’
‘~/tmp/scratch/xvfb-run.IikVIu’ ‘~/tmp/scratch/xvfb-run.Iiphzl’
‘~/tmp/scratch/xvfb-run.Iu82GD’ ‘~/tmp/scratch/xvfb-run.Iz8WH4’
‘~/tmp/scratch/xvfb-run.JVzhQj’ ‘~/tmp/scratch/xvfb-run.L8wmPu’
‘~/tmp/scratch/xvfb-run.MgOyYK’ ‘~/tmp/scratch/xvfb-run.QAszy4’
‘~/tmp/scratch/xvfb-run.QcBy9h’ ‘~/tmp/scratch/xvfb-run.QcL31s’
‘~/tmp/scratch/xvfb-run.QlyEwo’ ‘~/tmp/scratch/xvfb-run.R0dBHw’
‘~/tmp/scratch/xvfb-run.T6FWeb’ ‘~/tmp/scratch/xvfb-run.TEeifQ’
‘~/tmp/scratch/xvfb-run.TMmoxh’ ‘~/tmp/scratch/xvfb-run.W6L3z7’
‘~/tmp/scratch/xvfb-run.X0BbOx’ ‘~/tmp/scratch/xvfb-run.XkH5rU’
‘~/tmp/scratch/xvfb-run.XpHxdF’ ‘~/tmp/scratch/xvfb-run.YFhygX’
‘~/tmp/scratch/xvfb-run.aE78P7’ ‘~/tmp/scratch/xvfb-run.b7ZGlK’
‘~/tmp/scratch/xvfb-run.behchr’ ‘~/tmp/scratch/xvfb-run.cMoYzz’
‘~/tmp/scratch/xvfb-run.cXYN1K’ ‘~/tmp/scratch/xvfb-run.eGd6ZK’
‘~/tmp/scratch/xvfb-run.fJTs0f’ ‘~/tmp/scratch/xvfb-run.fKofoV’
‘~/tmp/scratch/xvfb-run.gMtg5q’ ‘~/tmp/scratch/xvfb-run.glpcGa’
‘~/tmp/scratch/xvfb-run.hDLdCi’ ‘~/tmp/scratch/xvfb-run.hKyGWj’
‘~/tmp/scratch/xvfb-run.hYEeSi’ ‘~/tmp/scratch/xvfb-run.hYJmYK’
‘~/tmp/scratch/xvfb-run.isGlrx’ ‘~/tmp/scratch/xvfb-run.k7Goo0’
‘~/tmp/scratch/xvfb-run.kZB3F8’ ‘~/tmp/scratch/xvfb-run.lEgs5H’
‘~/tmp/scratch/xvfb-run.ll1Uh5’ ‘~/tmp/scratch/xvfb-run.mO7pwz’
‘~/tmp/scratch/xvfb-run.mVOohv’ ‘~/tmp/scratch/xvfb-run.oBPvIU’
‘~/tmp/scratch/xvfb-run.ophnbt’ ‘~/tmp/scratch/xvfb-run.q2H5kd’
‘~/tmp/scratch/xvfb-run.qQEB7W’ ‘~/tmp/scratch/xvfb-run.qU79zg’
‘~/tmp/scratch/xvfb-run.qczkKd’ ‘~/tmp/scratch/xvfb-run.rDB4xT’
‘~/tmp/scratch/xvfb-run.rjwbOs’ ‘~/tmp/scratch/xvfb-run.rl6ZNZ’
‘~/tmp/scratch/xvfb-run.rvUnWN’ ‘~/tmp/scratch/xvfb-run.sn4QGo’
‘~/tmp/scratch/xvfb-run.uTmvML’ ‘~/tmp/scratch/xvfb-run.vC9POH’
‘~/tmp/scratch/xvfb-run.vm4eKf’ ‘~/tmp/scratch/xvfb-run.wkRx61’
‘~/tmp/scratch/xvfb-run.wySkcp’ ‘~/tmp/scratch/xvfb-run.xLf1lN’
‘~/tmp/scratch/xvfb-run.yEA059’ ‘~/tmp/scratch/xvfb-run.yguQsu’
‘~/tmp/scratch/xvfb-run.z4phRj’ ‘/dev/shm/listcols’
‘/dev/shm/listcols/buffers’ ‘/dev/shm/listcols/buffers/data’
‘/dev/shm/listcols/buffers/data/a’ ‘/dev/shm/listcols/buffers/data/b’
‘/dev/shm/listcols/buffers/data/c’ ‘/dev/shm/mtcars’
‘/dev/shm/mtcars/buffers’ ‘/dev/shm/mtcars/buffers/data’
‘/dev/shm/mtcars/buffers/data/__tiledb_rows’
‘/dev/shm/mtcars/buffers/data/am’ ‘/dev/shm/mtcars/buffers/data/carb’
‘/dev/shm/mtcars/buffers/data/cyl’
‘/dev/shm/mtcars/buffers/data/disp’
‘/dev/shm/mtcars/buffers/data/drat’
‘/dev/shm/mtcars/buffers/data/gear’ ‘/dev/shm/mtcars/buffers/data/hp’
‘/dev/shm/mtcars/buffers/data/mpg’
‘/dev/shm/mtcars/buffers/data/qsec’ ‘/dev/shm/mtcars/buffers/data/vs’
‘/dev/shm/mtcars/buffers/data/wt’ ‘/dev/shm/penguins’
‘/dev/shm/penguins/buffers’ ‘/dev/shm/penguins/buffers/data’
‘/dev/shm/penguins/buffers/data/__tiledb_rows’
‘/dev/shm/penguins/buffers/data/bill_depth_mm’
‘/dev/shm/penguins/buffers/data/bill_length_mm’
‘/dev/shm/penguins/buffers/data/body_mass_g’
‘/dev/shm/penguins/buffers/data/flipper_length_mm’
‘/dev/shm/penguins/buffers/data/island’
‘/dev/shm/penguins/buffers/data/sex’
‘/dev/shm/penguins/buffers/data/species’
‘/dev/shm/penguins/buffers/data/year’
‘/dev/shm/penguins/buffers/validity’
‘/dev/shm/penguins/buffers/validity/bill_depth_mm’
‘/dev/shm/penguins/buffers/validity/bill_length_mm’
‘/dev/shm/penguins/buffers/validity/body_mass_g’
‘/dev/shm/penguins/buffers/validity/flipper_length_mm’
‘/dev/shm/penguins/buffers/validity/sex’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [154s/155s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidySEM)
> if(requireNamespace("OpenMx", quietly = TRUE)) require("OpenMx")
Loading required package: OpenMx
To take full advantage of multiple cores, use:
mxOption(key='Number of Threads', value=parallel::detectCores()) #now
Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
> if(requireNamespace("umx", quietly = TRUE)) require("umx")
Loading required package: umx
For an overview type '?umx'
Attaching package: 'umx'
The following object is masked from 'package:stats':
loadings
> data_mix_ordinal <- read.csv("testthat/data_mix_ordinal.csv", stringsAsFactors = FALSE)
> options("test_mplus" = FALSE)
> test_check("tidySEM")
Beginning initial fit attempt
Fit attempt 0, fit=254.590792289837, new current best! (was 254.590792289838)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=257.666246825724, worse than previous best (254.590792289837)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=7035634.83878603, worse than previous best (254.590792289837)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=3813510.45872021, worse than previous best (254.590792289837)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=3813510.4587202, worse than previous best (254.590792289837)
Beginning fit attempt 5 of at maximum 10 extra tries
Fit attempt 5, fit=3222380.68053771, worse than previous best (254.590792289837)
Beginning fit attempt 6 of at maximum 10 extra tries
Fit attempt 6, fit=3222381.95912085, worse than previous best (254.590792289837)
Beginning fit attempt 7 of at maximum 10 extra tries
Fit attempt 7, fit=257.643221204716, worse than previous best (254.590792289837)
Beginning fit attempt 8 of at maximum 10 extra tries
Fit attempt 8, fit=7035634.83878603, worse than previous best (254.590792289837)
Beginning fit attempt 9 of at maximum 10 extra tries
Fit attempt 9, fit=7035634.83878603, worse than previous best (254.590792289837)
Beginning fit attempt 10 of at maximum 10 extra tries
Fit attempt 10, fit=256.704389584642, worse than previous best (254.590792289837)
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=3985.3130700803, new current best! (was 3985.3130700803)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=7613074.85267255, worse than previous best (3985.3130700803)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=571.901981657029, new current best! (was 3985.3130700803)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=571.901981657028, new current best! (was 571.901981657029)
Beginning fit attempt 4 of at maximum 10 extra tries
Beginning fit attempt 5 of at maximum 10 extra tries
Beginning fit attempt 6 of at maximum 10 extra tries
Beginning fit attempt 7 of at maximum 10 extra tries
Beginning fit attempt 8 of at maximum 10 extra tries
Fit attempt 8, fit=571.901981657028, new current best! (was 571.901981657028)
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=3985.3130700803, new current best! (was 3985.3130700803)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=7613074.85267255, worse than previous best (3985.3130700803)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=7613074.85267255, worse than previous best (3985.3130700803)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=571.901981657027, new current best! (was 3985.3130700803)
Beginning fit attempt 4 of at maximum 10 extra tries
Beginning fit attempt 5 of at maximum 10 extra tries
Beginning fit attempt 6 of at maximum 10 extra tries
Beginning fit attempt 7 of at maximum 10 extra tries
Beginning fit attempt 8 of at maximum 10 extra tries
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=424.192027151268, new current best! (was 424.192027151276)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=422.8917866492, new current best! (was 424.192027151268)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=360808.904170382, worse than previous best (422.8917866492)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=360808.904170382, worse than previous best (422.8917866492)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=427.456915693795, worse than previous best (422.8917866492)
Beginning fit attempt 5 of at maximum 10 extra tries
Fit attempt 5, fit=424.796604555296, worse than previous best (422.8917866492)
Beginning fit attempt 6 of at maximum 10 extra tries
Fit attempt 6, fit=360808.904170382, worse than previous best (422.8917866492)
Beginning fit attempt 7 of at maximum 10 extra tries
Fit attempt 7, fit=360808.904170382, worse than previous best (422.8917866492)
Beginning fit attempt 8 of at maximum 10 extra tries
Fit attempt 8, fit=421.591546147155, new current best! (was 422.8917866492)
Beginning fit attempt 9 of at maximum 10 extra tries
Fit attempt 9, fit=421.591546147133, new current best! (was 421.591546147155)
Beginning fit attempt 10 of at maximum 10 extra tries
Fit attempt 10, fit=360808.904170382, worse than previous best (421.591546147133)
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=1492.04120431826, new current best! (was 1492.04120431827)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=1078383.96916062, worse than previous best (1492.04120431826)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=1078383.96916062, worse than previous best (1492.04120431826)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=487.462079245382, new current best! (was 1492.04120431826)
Beginning fit attempt 4 of at maximum 10 extra tries
Beginning fit attempt 5 of at maximum 10 extra tries
Fit attempt 5, fit=487.462079245382, new current best! (was 487.462079245382)
Beginning fit attempt 6 of at maximum 10 extra tries
Beginning fit attempt 7 of at maximum 10 extra tries
Beginning fit attempt 8 of at maximum 10 extra tries
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Fit attempt 10, fit=487.462079245381, new current best! (was 487.462079245382)
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=603.4053017079, new current best! (was 603.40530171146)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=718792.771925815, worse than previous best (603.4053017079)
Beginning fit attempt 2 of at maximum 10 extra tries
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=472.500476353258, new current best! (was 603.4053017079)
Beginning fit attempt 4 of at maximum 10 extra tries
Beginning fit attempt 5 of at maximum 10 extra tries
Beginning fit attempt 6 of at maximum 10 extra tries
Beginning fit attempt 7 of at maximum 10 extra tries
Beginning fit attempt 8 of at maximum 10 extra tries
Fit attempt 8, fit=472.500476353258, new current best! (was 472.500476353258)
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=1311.34284825735, new current best! (was 1311.34284826496)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=720411.671966184, worse than previous best (1311.34284825735)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=485.643885310302, new current best! (was 1311.34284825735)
Beginning fit attempt 3 of at maximum 10 extra tries
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=485.643885310302, new current best! (was 485.643885310302)
Beginning fit attempt 5 of at maximum 10 extra tries
Beginning fit attempt 6 of at maximum 10 extra tries
Beginning fit attempt 7 of at maximum 10 extra tries
Beginning fit attempt 8 of at maximum 10 extra tries
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=421.618328482143, new current best! (was 421.618328482144)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=424.741731763394, worse than previous best (421.618328482143)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=427.170679014477, worse than previous best (421.618328482143)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=427.963578111324, worse than previous best (421.618328482143)
Beginning fit attempt 5 of at maximum 10 extra tries
Fit attempt 5, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 6 of at maximum 10 extra tries
Fit attempt 6, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 7 of at maximum 10 extra tries
Fit attempt 7, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 8 of at maximum 10 extra tries
Beginning fit attempt 9 of at maximum 10 extra tries
Fit attempt 9, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 10 of at maximum 10 extra tries
Fit attempt 10, fit=360808.930952717, worse than previous best (421.618328482143)
Final run, for Hessian and/or standard errors and/or confidence intervals
Saving _problems/test-pseudo_class_technique-16.R
[ FAIL 1 | WARN 10 | SKIP 10 | PASS 153 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• Not run by package maintainer (5): 'test-multigroup_mx.R:3:5',
'test-openmx_ordinal.R:3:5', 'test-openmx_ordinal_methods.R:4:5',
'test-plot_multigroup_multilevel.R:2:3', 'test-plot_plot_prob.R:3:3'
• On CRAN (1): 'test-plot_profiles_varyingcov.R:2:3'
• empty test (4): , , ,
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-pseudo_class_technique.R:13:3'): pseudo_class works ────────────
<functionNotFoundError/objectNotFoundError/error/condition>
Error in `lav_object_inspect_coef(object = object, type = type, add.labels = labels, add.class = TRUE)`: could not find function "lav_object_inspect_coef"
Backtrace:
▆
1. ├─tidySEM::pseudo_class(...)
2. └─tidySEM:::pseudo_class.class_draws(...)
3. ├─tidySEM:::pseudo_class_pool(fits, ...)
4. └─tidySEM:::pseudo_class_pool.lavaan(fits, ...)
5. ├─lavaan::coef(example_fit)
6. └─lavaan::coef(example_fit)
7. └─lavaan (local) .local(object, ...)
[ FAIL 1 | WARN 10 | SKIP 10 | PASS 153 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [105s/105s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidySEM)
> if(requireNamespace("OpenMx", quietly = TRUE)) require("OpenMx")
Loading required package: OpenMx
To take full advantage of multiple cores, use:
mxOption(key='Number of Threads', value=parallel::detectCores()) #now
Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
> if(requireNamespace("umx", quietly = TRUE)) require("umx")
Loading required package: umx
For an overview type '?umx'
Attaching package: 'umx'
The following object is masked from 'package:stats':
loadings
> data_mix_ordinal <- read.csv("testthat/data_mix_ordinal.csv", stringsAsFactors = FALSE)
> options("test_mplus" = FALSE)
> test_check("tidySEM")
Beginning initial fit attempt
Fit attempt 0, fit=254.590792289837, new current best! (was 254.590792289838)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=257.666246825725, worse than previous best (254.590792289837)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=7035634.83878603, worse than previous best (254.590792289837)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=3813510.45872071, worse than previous best (254.590792289837)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=3813510.45872021, worse than previous best (254.590792289837)
Beginning fit attempt 5 of at maximum 10 extra tries
Fit attempt 5, fit=3222380.68053771, worse than previous best (254.590792289837)
Beginning fit attempt 6 of at maximum 10 extra tries
Fit attempt 6, fit=3222381.04137668, worse than previous best (254.590792289837)
Beginning fit attempt 7 of at maximum 10 extra tries
Fit attempt 7, fit=257.751283337453, worse than previous best (254.590792289837)
Beginning fit attempt 8 of at maximum 10 extra tries
Fit attempt 8, fit=7035634.83878603, worse than previous best (254.590792289837)
Beginning fit attempt 9 of at maximum 10 extra tries
Fit attempt 9, fit=7035634.83878603, worse than previous best (254.590792289837)
Beginning fit attempt 10 of at maximum 10 extra tries
Fit attempt 10, fit=257.187265660275, worse than previous best (254.590792289837)
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=3985.3130700803, new current best! (was 3985.3130700803)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=7613074.85267255, worse than previous best (3985.3130700803)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=571.901981657028, new current best! (was 3985.3130700803)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=571.901981657028, new current best! (was 571.901981657028)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=571.901981657027, new current best! (was 571.901981657028)
Beginning fit attempt 5 of at maximum 10 extra tries
Beginning fit attempt 6 of at maximum 10 extra tries
Beginning fit attempt 7 of at maximum 10 extra tries
Beginning fit attempt 8 of at maximum 10 extra tries
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=3985.3130700803, new current best! (was 3985.3130700803)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=7613074.85267255, worse than previous best (3985.3130700803)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=7613074.85267255, worse than previous best (3985.3130700803)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=571.90198165703, new current best! (was 3985.3130700803)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=571.901981657028, new current best! (was 571.90198165703)
Beginning fit attempt 5 of at maximum 10 extra tries
Fit attempt 5, fit=571.901981657027, new current best! (was 571.901981657028)
Beginning fit attempt 6 of at maximum 10 extra tries
Beginning fit attempt 7 of at maximum 10 extra tries
Beginning fit attempt 8 of at maximum 10 extra tries
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=424.192027151267, new current best! (was 424.192027151277)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=422.891786649199, new current best! (was 424.192027151267)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=360808.904170382, worse than previous best (422.891786649199)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=360808.904170382, worse than previous best (422.891786649199)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=428.723338754994, worse than previous best (422.891786649199)
Beginning fit attempt 5 of at maximum 10 extra tries
Fit attempt 5, fit=424.796604555295, worse than previous best (422.891786649199)
Beginning fit attempt 6 of at maximum 10 extra tries
Fit attempt 6, fit=360808.904170382, worse than previous best (422.891786649199)
Beginning fit attempt 7 of at maximum 10 extra tries
Fit attempt 7, fit=360808.904170382, worse than previous best (422.891786649199)
Beginning fit attempt 8 of at maximum 10 extra tries
Fit attempt 8, fit=421.591546147156, new current best! (was 422.891786649199)
Beginning fit attempt 9 of at maximum 10 extra tries
Fit attempt 9, fit=421.59154614713, new current best! (was 421.591546147156)
Beginning fit attempt 10 of at maximum 10 extra tries
Fit attempt 10, fit=360808.904170382, worse than previous best (421.59154614713)
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=1492.04120431826, new current best! (was 1492.04120431826)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=1078383.96916062, worse than previous best (1492.04120431826)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=1078383.96916062, worse than previous best (1492.04120431826)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=1336.92668446712, new current best! (was 1492.04120431826)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=487.462079245382, new current best! (was 1336.92668446712)
Beginning fit attempt 5 of at maximum 10 extra tries
Fit attempt 5, fit=487.462079245382, new current best! (was 487.462079245382)
Beginning fit attempt 6 of at maximum 10 extra tries
Beginning fit attempt 7 of at maximum 10 extra tries
Beginning fit attempt 8 of at maximum 10 extra tries
Fit attempt 8, fit=487.462079245381, new current best! (was 487.462079245382)
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=603.405301707899, new current best! (was 603.405301707904)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=718792.771925815, worse than previous best (603.405301707899)
Beginning fit attempt 2 of at maximum 10 extra tries
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=472.500476353258, new current best! (was 603.405301707899)
Beginning fit attempt 4 of at maximum 10 extra tries
Beginning fit attempt 5 of at maximum 10 extra tries
Beginning fit attempt 6 of at maximum 10 extra tries
Beginning fit attempt 7 of at maximum 10 extra tries
Fit attempt 7, fit=472.500476353258, new current best! (was 472.500476353258)
Beginning fit attempt 8 of at maximum 10 extra tries
Fit attempt 8, fit=472.500476353258, new current best! (was 472.500476353258)
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=1311.34284825687, new current best! (was 1311.34284826144)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=720411.671966184, worse than previous best (1311.34284825687)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=485.643885310303, new current best! (was 1311.34284825687)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=485.643885310302, new current best! (was 485.643885310303)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=485.643885310302, new current best! (was 485.643885310302)
Beginning fit attempt 5 of at maximum 10 extra tries
Beginning fit attempt 6 of at maximum 10 extra tries
Fit attempt 6, fit=485.643885310302, new current best! (was 485.643885310302)
Beginning fit attempt 7 of at maximum 10 extra tries
Beginning fit attempt 8 of at maximum 10 extra tries
Fit attempt 8, fit=485.643885310302, new current best! (was 485.643885310302)
Beginning fit attempt 9 of at maximum 10 extra tries
Beginning fit attempt 10 of at maximum 10 extra tries
Final run, for Hessian and/or standard errors and/or confidence intervals
Beginning initial fit attempt
Fit attempt 0, fit=421.618328482143, new current best! (was 421.618328482143)
Beginning fit attempt 1 of at maximum 10 extra tries
Fit attempt 1, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 2 of at maximum 10 extra tries
Fit attempt 2, fit=424.559289823321, worse than previous best (421.618328482143)
Beginning fit attempt 3 of at maximum 10 extra tries
Fit attempt 3, fit=427.032635750421, worse than previous best (421.618328482143)
Beginning fit attempt 4 of at maximum 10 extra tries
Fit attempt 4, fit=427.834551174654, worse than previous best (421.618328482143)
Beginning fit attempt 5 of at maximum 10 extra tries
Fit attempt 5, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 6 of at maximum 10 extra tries
Fit attempt 6, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 7 of at maximum 10 extra tries
Fit attempt 7, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 8 of at maximum 10 extra tries
Beginning fit attempt 9 of at maximum 10 extra tries
Fit attempt 9, fit=360808.930952717, worse than previous best (421.618328482143)
Beginning fit attempt 10 of at maximum 10 extra tries
Fit attempt 10, fit=360808.930952717, worse than previous best (421.618328482143)
Final run, for Hessian and/or standard errors and/or confidence intervals
Saving _problems/test-pseudo_class_technique-16.R
[ FAIL 1 | WARN 10 | SKIP 10 | PASS 153 ]
══ Skipped tests (10) ══════════════════════════════════════════════════════════
• Not run by package maintainer (5): 'test-multigroup_mx.R:3:5',
'test-openmx_ordinal.R:3:5', 'test-openmx_ordinal_methods.R:4:5',
'test-plot_multigroup_multilevel.R:2:3', 'test-plot_plot_prob.R:3:3'
• On CRAN (1): 'test-plot_profiles_varyingcov.R:2:3'
• empty test (4): , , ,
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-pseudo_class_technique.R:13:3'): pseudo_class works ────────────
<functionNotFoundError/objectNotFoundError/error/condition>
Error in `lav_object_inspect_coef(object = object, type = type, add.labels = labels, add.class = TRUE)`: could not find function "lav_object_inspect_coef"
Backtrace:
▆
1. ├─tidySEM::pseudo_class(...)
2. └─tidySEM:::pseudo_class.class_draws(...)
3. ├─tidySEM:::pseudo_class_pool(fits, ...)
4. └─tidySEM:::pseudo_class_pool.lavaan(fits, ...)
5. ├─lavaan::coef(example_fit)
6. └─lavaan::coef(example_fit)
7. └─lavaan (local) .local(object, ...)
[ FAIL 1 | WARN 10 | SKIP 10 | PASS 153 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc