CRAN Package Check Results for Maintainer ‘Robin Denz <robin.denz at rub.de>’

Last updated on 2026-08-01 05:57:15 CEST.

Package	OK	NOTE	ERROR
adjustedCurves	11	2
CareDensity	12	1
contsurvplot	12	1
simDAG	6		7

Package adjustedCurves

Current CRAN status: OK: 11, NOTE: 2

Version: 0.11.4
Check: Rd contents
Result: NOTE Rd files without \usage: ‘cif_aalen_johansen.Rd’ ‘cif_aiptw.Rd’ ‘cif_aiptw_pseudo.Rd’ ‘cif_direct.Rd’ ‘cif_direct_pseudo.Rd’ ‘cif_iptw.Rd’ ‘cif_iptw_pseudo.Rd’ ‘cif_matching.Rd’ ‘surv_aiptw.Rd’ ‘surv_aiptw_pseudo.Rd’ ‘surv_direct.Rd’ ‘surv_direct_pseudo.Rd’ ‘surv_emp_lik.Rd’ ‘surv_iptw_cox.Rd’ ‘surv_iptw_km.Rd’ ‘surv_iptw_pseudo.Rd’ ‘surv_iv_2SRIF.Rd’ ‘surv_km.Rd’ ‘surv_matching.Rd’ ‘surv_prox_aiptw.Rd’ ‘surv_prox_iptw.Rd’ ‘surv_strat_amato.Rd’ ‘surv_strat_cupples.Rd’ ‘surv_strat_nieto.Rd’ \arguments should not be documented without \usage. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.11.4
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0FsrsN’ ‘~/tmp/scratch/Rtmp0PZjmx’ ‘~/tmp/scratch/Rtmp0gTXyI’ ‘~/tmp/scratch/Rtmp0hPY8b’ ‘~/tmp/scratch/Rtmp0xoI6G’ ‘~/tmp/scratch/Rtmp1m6Mx6’ ‘~/tmp/scratch/Rtmp1tnO0e’ ‘~/tmp/scratch/Rtmp23H3eL’ ‘~/tmp/scratch/Rtmp2tfcSc’ ‘~/tmp/scratch/Rtmp36raUG’ ‘~/tmp/scratch/Rtmp3JYo2d’ ‘~/tmp/scratch/Rtmp3zbVnX’ ‘~/tmp/scratch/Rtmp40NlC8’ ‘~/tmp/scratch/Rtmp4TVC9G’ ‘~/tmp/scratch/Rtmp4aUuZy’ ‘~/tmp/scratch/Rtmp4fGJEP’ ‘~/tmp/scratch/Rtmp4n3Fs4’ ‘~/tmp/scratch/Rtmp4otf7T’ ‘~/tmp/scratch/Rtmp5MGw1J’ ‘~/tmp/scratch/Rtmp5Vs5Ve’ ‘~/tmp/scratch/Rtmp5XOdif’ ‘~/tmp/scratch/Rtmp5xHZRK’ ‘~/tmp/scratch/Rtmp6DpJ8g’ ‘~/tmp/scratch/Rtmp6c4ODO’ ‘~/tmp/scratch/Rtmp6rTSGF’ ‘~/tmp/scratch/Rtmp74Xu2B’ ‘~/tmp/scratch/Rtmp7X02ve’ ‘~/tmp/scratch/Rtmp7kpj0M’ ‘~/tmp/scratch/Rtmp95D4Bo’ ‘~/tmp/scratch/Rtmp9qqZVL’ ‘~/tmp/scratch/Rtmp9vgda4’ ‘~/tmp/scratch/RtmpABrtH2’ ‘~/tmp/scratch/RtmpANfOLm’ ‘~/tmp/scratch/RtmpAZRGVI’ ‘~/tmp/scratch/RtmpAhNnAr’ ‘~/tmp/scratch/RtmpAweFYj’ ‘~/tmp/scratch/RtmpB7yEpX’ ‘~/tmp/scratch/RtmpBeID3B’ ‘~/tmp/scratch/RtmpC1Ug7u’ ‘~/tmp/scratch/RtmpCARZsy’ ‘~/tmp/scratch/RtmpCKm7Uc’ ‘~/tmp/scratch/RtmpCmhg9e’ ‘~/tmp/scratch/RtmpDNgxY3’ ‘~/tmp/scratch/RtmpDTBP12’ ‘~/tmp/scratch/RtmpDcQIpD’ ‘~/tmp/scratch/RtmpDdlRKo’ ‘~/tmp/scratch/RtmpDwkcR9’ ‘~/tmp/scratch/RtmpEQoNgJ’ ‘~/tmp/scratch/RtmpEpGYTi’ ‘~/tmp/scratch/RtmpFFxT2p’ ‘~/tmp/scratch/RtmpFwIuAF’ ‘~/tmp/scratch/RtmpG6tKUg’ ‘~/tmp/scratch/RtmpGaKvZl’ ‘~/tmp/scratch/RtmpH0xTIj’ ‘~/tmp/scratch/RtmpHQlswL’ ‘~/tmp/scratch/RtmpHhtksG’ ‘~/tmp/scratch/RtmpHnSUDI’ ‘~/tmp/scratch/RtmpIA03Vo’ ‘~/tmp/scratch/RtmpIFLJZ4’ ‘~/tmp/scratch/RtmpIG49mH’ ‘~/tmp/scratch/RtmpIHBcyZ’ ‘~/tmp/scratch/RtmpJ9JUnB’ ‘~/tmp/scratch/RtmpJA9Wsw’ ‘~/tmp/scratch/RtmpJID3tc’ ‘~/tmp/scratch/RtmpJZqOVv’ ‘~/tmp/scratch/RtmpJubOVy’ ‘~/tmp/scratch/RtmpK3ExFs’ ‘~/tmp/scratch/RtmpK3ZkPz’ ‘~/tmp/scratch/RtmpKiVPn5’ ‘~/tmp/scratch/RtmpM0et4d’ ‘~/tmp/scratch/RtmpMHgfKi’ ‘~/tmp/scratch/RtmpMRmNSI’ ‘~/tmp/scratch/RtmpN6AoBL’ ‘~/tmp/scratch/RtmpNBxtIx’ ‘~/tmp/scratch/RtmpNDQQzE’ ‘~/tmp/scratch/RtmpNslJye’ ‘~/tmp/scratch/RtmpO2wGau’ ‘~/tmp/scratch/RtmpOTfp6S’ ‘~/tmp/scratch/RtmpOoI25B’ ‘~/tmp/scratch/RtmpOsLSU6’ ‘~/tmp/scratch/RtmpP1h1TE’ ‘~/tmp/scratch/RtmpPtNPrP’ ‘~/tmp/scratch/RtmpPx4F86’ ‘~/tmp/scratch/RtmpRCnqM8’ ‘~/tmp/scratch/RtmpRqBYKv’ ‘~/tmp/scratch/RtmpS1cLxx’ ‘~/tmp/scratch/RtmpS72w2z’ ‘~/tmp/scratch/RtmpT7Nz6o’ ‘~/tmp/scratch/RtmpTEmYlr’ ‘~/tmp/scratch/RtmpTNLyKS’ ‘~/tmp/scratch/RtmpTPVAUp’ ‘~/tmp/scratch/RtmpTpAsi2’ ‘~/tmp/scratch/RtmpTuvPmd’ ‘~/tmp/scratch/RtmpUFmJ2K’ ‘~/tmp/scratch/RtmpUcVKIw’ ‘~/tmp/scratch/RtmpUpa7Yf’ ‘~/tmp/scratch/RtmpV6Ktce’ ‘~/tmp/scratch/RtmpVkpdX9’ ‘~/tmp/scratch/RtmpVwoBa9’ ‘~/tmp/scratch/RtmpWEu01C’ ‘~/tmp/scratch/RtmpWmbQEg’ ‘~/tmp/scratch/RtmpXiuJGX’ ‘~/tmp/scratch/RtmpXyuvcS’ ‘~/tmp/scratch/RtmpYNlfqU’ ‘~/tmp/scratch/RtmpYbeP8V’ ‘~/tmp/scratch/RtmpYkmgZo’ ‘~/tmp/scratch/RtmpaGs7pa’ ‘~/tmp/scratch/RtmpaITjgf’ ‘~/tmp/scratch/RtmpaiuqrJ’ ‘~/tmp/scratch/RtmpbYSMcB’ ‘~/tmp/scratch/Rtmpbw48BW’ ‘~/tmp/scratch/Rtmpc6hej5’ ‘~/tmp/scratch/RtmpcVSn98’ ‘~/tmp/scratch/Rtmpcrsubf’ ‘~/tmp/scratch/Rtmpcs2zyG’ ‘~/tmp/scratch/Rtmpd39Ga9’ ‘~/tmp/scratch/RtmpdPAmsn’ ‘~/tmp/scratch/RtmpdbJDmy’ ‘~/tmp/scratch/Rtmpdm4Qmz’ ‘~/tmp/scratch/Rtmpdu5zWW’ ‘~/tmp/scratch/Rtmpe0p2Nq’ ‘~/tmp/scratch/RtmpeUMsSb’ ‘~/tmp/scratch/RtmpeWczaZ’ ‘~/tmp/scratch/RtmpelaLbI’ ‘~/tmp/scratch/RtmpezVPSE’ ‘~/tmp/scratch/Rtmpf5hrNq’ ‘~/tmp/scratch/Rtmpf9ojn2’ ‘~/tmp/scratch/RtmpfDhuXh’ ‘~/tmp/scratch/RtmpfXv8gI’ ‘~/tmp/scratch/Rtmpfucc20’ ‘~/tmp/scratch/RtmpgFEp0A’ ‘~/tmp/scratch/RtmpgGlCeE’ ‘~/tmp/scratch/RtmpgiNtXX’ ‘~/tmp/scratch/RtmpgoanAA’ ‘~/tmp/scratch/RtmphSY6Qz’ ‘~/tmp/scratch/RtmphZl2Mo’ ‘~/tmp/scratch/RtmphcN5My’ ‘~/tmp/scratch/Rtmpicd6r8’ ‘~/tmp/scratch/RtmpitaZAi’ ‘~/tmp/scratch/RtmpjcS0Tm’ ‘~/tmp/scratch/RtmpkKIaDC’ ‘~/tmp/scratch/RtmpkRgDo6’ ‘~/tmp/scratch/RtmpkyOB2K’ ‘~/tmp/scratch/RtmplbP4ek’ ‘~/tmp/scratch/RtmplqLLit’ ‘~/tmp/scratch/RtmpmhCMGZ’ ‘~/tmp/scratch/Rtmpn5xhBX’ ‘~/tmp/scratch/RtmpnWV3uS’ ‘~/tmp/scratch/RtmpoIOa7c’ ‘~/tmp/scratch/RtmpoRrUzB’ ‘~/tmp/scratch/RtmpoebSZi’ ‘~/tmp/scratch/RtmpomnaYY’ ‘~/tmp/scratch/Rtmpotet6P’ ‘~/tmp/scratch/Rtmpov17Y6’ ‘~/tmp/scratch/RtmpqRBjul’ ‘~/tmp/scratch/RtmpqVvO4P’ ‘~/tmp/scratch/Rtmpr9JQ6x’ ‘~/tmp/scratch/RtmprTQsXs’ ‘~/tmp/scratch/RtmprsBhZi’ ‘~/tmp/scratch/Rtmpstg6Tm’ ‘~/tmp/scratch/Rtmpt9mbjF’ ‘~/tmp/scratch/RtmptLk9DD’ ‘~/tmp/scratch/RtmptUDdVk’ ‘~/tmp/scratch/RtmptldcSR’ ‘~/tmp/scratch/RtmptsoQ0M’ ‘~/tmp/scratch/Rtmpu6J3pu’ ‘~/tmp/scratch/RtmpvQb0Bv’ ‘~/tmp/scratch/RtmpvWxgWK’ ‘~/tmp/scratch/Rtmpva9iXr’ ‘~/tmp/scratch/Rtmpw6u2Dy’ ‘~/tmp/scratch/RtmpwMbLdM’ ‘~/tmp/scratch/Rtmpwa69FB’ ‘~/tmp/scratch/RtmpwmHtQk’ ‘~/tmp/scratch/Rtmpx1X992’ ‘~/tmp/scratch/RtmpxAAOIe’ ‘~/tmp/scratch/RtmpxEu4Ky’ ‘~/tmp/scratch/RtmpxzVlJb’ ‘~/tmp/scratch/RtmpyQrUIe’ ‘~/tmp/scratch/Rtmpz336WP’ ‘~/tmp/scratch/cc6CM1Ur.s’ ‘~/tmp/scratch/quarto-sessiond1b3f2fb3c0eaa2f’ ‘~/tmp/scratch/xvfb-run.0Mqqw8’ ‘~/tmp/scratch/xvfb-run.0s5dCE’ ‘~/tmp/scratch/xvfb-run.23FnP9’ ‘~/tmp/scratch/xvfb-run.2EHWUG’ ‘~/tmp/scratch/xvfb-run.2PUDPD’ ‘~/tmp/scratch/xvfb-run.2bOELa’ ‘~/tmp/scratch/xvfb-run.3ArlDS’ ‘~/tmp/scratch/xvfb-run.3sNZzH’ ‘~/tmp/scratch/xvfb-run.4ymQWT’ ‘~/tmp/scratch/xvfb-run.4zWepK’ ‘~/tmp/scratch/xvfb-run.5yt5in’ ‘~/tmp/scratch/xvfb-run.6K8CXE’ ‘~/tmp/scratch/xvfb-run.6yl60N’ ‘~/tmp/scratch/xvfb-run.C25Cx4’ ‘~/tmp/scratch/xvfb-run.C8B0ST’ ‘~/tmp/scratch/xvfb-run.CNueO3’ ‘~/tmp/scratch/xvfb-run.CW5OhY’ ‘~/tmp/scratch/xvfb-run.DqZz3S’ ‘~/tmp/scratch/xvfb-run.EQnbGo’ ‘~/tmp/scratch/xvfb-run.FBIYF5’ ‘~/tmp/scratch/xvfb-run.G5v7Ke’ ‘~/tmp/scratch/xvfb-run.GQXeJ7’ ‘~/tmp/scratch/xvfb-run.GvOfaA’ ‘~/tmp/scratch/xvfb-run.GyW8r8’ ‘~/tmp/scratch/xvfb-run.HDAAEE’ ‘~/tmp/scratch/xvfb-run.ISaocl’ ‘~/tmp/scratch/xvfb-run.IxEBUn’ ‘~/tmp/scratch/xvfb-run.J2hmsl’ ‘~/tmp/scratch/xvfb-run.JUQFct’ ‘~/tmp/scratch/xvfb-run.KSEISL’ ‘~/tmp/scratch/xvfb-run.LChWNL’ ‘~/tmp/scratch/xvfb-run.MCuaO8’ ‘~/tmp/scratch/xvfb-run.Mmpz3J’ ‘~/tmp/scratch/xvfb-run.MxAZ6B’ ‘~/tmp/scratch/xvfb-run.NDO3Wz’ ‘~/tmp/scratch/xvfb-run.Nrk8Ux’ ‘~/tmp/scratch/xvfb-run.O62xLD’ ‘~/tmp/scratch/xvfb-run.OHRH8z’ ‘~/tmp/scratch/xvfb-run.OtHZ6K’ ‘~/tmp/scratch/xvfb-run.R5y9dq’ ‘~/tmp/scratch/xvfb-run.RStFQw’ ‘~/tmp/scratch/xvfb-run.RnStZn’ ‘~/tmp/scratch/xvfb-run.SUUCvt’ ‘~/tmp/scratch/xvfb-run.U2zaG6’ ‘~/tmp/scratch/xvfb-run.UeqG4X’ ‘~/tmp/scratch/xvfb-run.UwBv2j’ ‘~/tmp/scratch/xvfb-run.Vxmpjy’ ‘~/tmp/scratch/xvfb-run.W0pwoN’ ‘~/tmp/scratch/xvfb-run.XFH5Mu’ ‘~/tmp/scratch/xvfb-run.Y5BNt3’ ‘~/tmp/scratch/xvfb-run.YnKijH’ ‘~/tmp/scratch/xvfb-run.ZSmu2e’ ‘~/tmp/scratch/xvfb-run.aBteLB’ ‘~/tmp/scratch/xvfb-run.ay3Msp’ ‘~/tmp/scratch/xvfb-run.bg192I’ ‘~/tmp/scratch/xvfb-run.cqal8A’ ‘~/tmp/scratch/xvfb-run.dURTot’ ‘~/tmp/scratch/xvfb-run.fWKIpd’ ‘~/tmp/scratch/xvfb-run.fo1urT’ ‘~/tmp/scratch/xvfb-run.hMLAYf’ ‘~/tmp/scratch/xvfb-run.i13Ges’ ‘~/tmp/scratch/xvfb-run.iSzRwO’ ‘~/tmp/scratch/xvfb-run.ir0HlI’ ‘~/tmp/scratch/xvfb-run.it9Oun’ ‘~/tmp/scratch/xvfb-run.j5UlF9’ ‘~/tmp/scratch/xvfb-run.jSpfj2’ ‘~/tmp/scratch/xvfb-run.l6YqAp’ ‘~/tmp/scratch/xvfb-run.mHftxy’ ‘~/tmp/scratch/xvfb-run.pOcedI’ ‘~/tmp/scratch/xvfb-run.pdHGQG’ ‘~/tmp/scratch/xvfb-run.pvbXtI’ ‘~/tmp/scratch/xvfb-run.qVpU6h’ ‘~/tmp/scratch/xvfb-run.tYrsdM’ ‘~/tmp/scratch/xvfb-run.v7ULrc’ ‘~/tmp/scratch/xvfb-run.wHZbJw’ ‘~/tmp/scratch/xvfb-run.wK27fl’ ‘~/tmp/scratch/xvfb-run.x9Z0Hq’ ‘~/tmp/scratch/xvfb-run.xaM8nq’ ‘~/tmp/scratch/xvfb-run.xhMbrS’ ‘~/tmp/scratch/xvfb-run.yBqZgz’ Flavor: r-devel-linux-x86_64-debian-gcc

Package CareDensity

Current CRAN status: OK: 12, NOTE: 1

Version: 0.1.0
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0q1dou’ ‘~/tmp/scratch/Rtmp1XLxLF’ ‘~/tmp/scratch/Rtmp2FXgIw’ ‘~/tmp/scratch/Rtmp2W7n3m’ ‘~/tmp/scratch/Rtmp2h6MVV’ ‘~/tmp/scratch/Rtmp2iB3b6’ ‘~/tmp/scratch/Rtmp2q204D’ ‘~/tmp/scratch/Rtmp38FO51’ ‘~/tmp/scratch/Rtmp3Fkklp’ ‘~/tmp/scratch/Rtmp3UA8XB’ ‘~/tmp/scratch/Rtmp3kjAp2’ ‘~/tmp/scratch/Rtmp3pLh5t’ ‘~/tmp/scratch/Rtmp3sy2ug’ ‘~/tmp/scratch/Rtmp410j0c’ ‘~/tmp/scratch/Rtmp4Agrsj’ ‘~/tmp/scratch/Rtmp4Ftuk9’ ‘~/tmp/scratch/Rtmp5QUC0n’ ‘~/tmp/scratch/Rtmp6IrO3l’ ‘~/tmp/scratch/Rtmp6TUSfP’ ‘~/tmp/scratch/Rtmp6UTGBi’ ‘~/tmp/scratch/Rtmp6sPM71’ ‘~/tmp/scratch/Rtmp86pxNy’ ‘~/tmp/scratch/Rtmp88xgph’ ‘~/tmp/scratch/Rtmp8uP89R’ ‘~/tmp/scratch/Rtmp9X8nIf’ ‘~/tmp/scratch/Rtmp9kxFNX’ ‘~/tmp/scratch/RtmpAkAO5y’ ‘~/tmp/scratch/RtmpBA0KHz’ ‘~/tmp/scratch/RtmpBM33B1’ ‘~/tmp/scratch/RtmpC47UKV’ ‘~/tmp/scratch/RtmpC9QdWk’ ‘~/tmp/scratch/RtmpCauuaY’ ‘~/tmp/scratch/RtmpDCiLAG’ ‘~/tmp/scratch/RtmpDPECyy’ ‘~/tmp/scratch/RtmpDn62Oz’ ‘~/tmp/scratch/RtmpDqwG4H’ ‘~/tmp/scratch/RtmpEQDj2b’ ‘~/tmp/scratch/RtmpEZAeRc’ ‘~/tmp/scratch/RtmpEjXQlh’ ‘~/tmp/scratch/RtmpErCk0I’ ‘~/tmp/scratch/RtmpFZX7EH’ ‘~/tmp/scratch/RtmpFbn3FE’ ‘~/tmp/scratch/RtmpFt2j6r’ ‘~/tmp/scratch/RtmpGR3fTD’ ‘~/tmp/scratch/RtmpH3FPlk’ ‘~/tmp/scratch/RtmpHADruA’ ‘~/tmp/scratch/RtmpJOaOF9’ ‘~/tmp/scratch/RtmpL7XTZY’ ‘~/tmp/scratch/RtmpLF3IGt’ ‘~/tmp/scratch/RtmpLwrGX3’ ‘~/tmp/scratch/RtmpMdbFuV’ ‘~/tmp/scratch/RtmpNRLdnB’ ‘~/tmp/scratch/RtmpNU2b0i’ ‘~/tmp/scratch/RtmpNrPCzZ’ ‘~/tmp/scratch/RtmpO7ImVy’ ‘~/tmp/scratch/RtmpO9da2o’ ‘~/tmp/scratch/RtmpODqBKp’ ‘~/tmp/scratch/RtmpP7FKd0’ ‘~/tmp/scratch/RtmpQJ6Ls4’ ‘~/tmp/scratch/RtmpQMVnhF’ ‘~/tmp/scratch/RtmpR0fZUC’ ‘~/tmp/scratch/RtmpR4OVBd’ ‘~/tmp/scratch/RtmpRlM8lC’ ‘~/tmp/scratch/RtmpRv3Mow’ ‘~/tmp/scratch/RtmpRys0Oy’ ‘~/tmp/scratch/RtmpSIIqhZ’ ‘~/tmp/scratch/RtmpSZF587’ ‘~/tmp/scratch/RtmpSeZlTN’ ‘~/tmp/scratch/RtmpT9yQ7r’ ‘~/tmp/scratch/RtmpTJVrvW’ ‘~/tmp/scratch/RtmpTbztjE’ ‘~/tmp/scratch/RtmpUT9ISx’ ‘~/tmp/scratch/RtmpUxaGXN’ ‘~/tmp/scratch/RtmpWIv5l7’ ‘~/tmp/scratch/RtmpWVqdaO’ ‘~/tmp/scratch/RtmpWdI5HG’ ‘~/tmp/scratch/RtmpX6PIJ1’ ‘~/tmp/scratch/RtmpXMdqOU’ ‘~/tmp/scratch/RtmpXaGXjb’ ‘~/tmp/scratch/RtmpXloP1O’ ‘~/tmp/scratch/RtmpYJVHkG’ ‘~/tmp/scratch/RtmpYxqEm0’ ‘~/tmp/scratch/RtmpZIdX8m’ ‘~/tmp/scratch/RtmpZWb0mT’ ‘~/tmp/scratch/RtmpaCWoFp’ ‘~/tmp/scratch/RtmpaiKBLg’ ‘~/tmp/scratch/RtmpasefMa’ ‘~/tmp/scratch/RtmpcP21VW’ ‘~/tmp/scratch/Rtmpct4MCM’ ‘~/tmp/scratch/Rtmpd2IyP5’ ‘~/tmp/scratch/RtmpdXqwXn’ ‘~/tmp/scratch/RtmpeHTM4Y’ ‘~/tmp/scratch/RtmpenTzXq’ ‘~/tmp/scratch/RtmpfA5G21’ ‘~/tmp/scratch/RtmpgTQXRq’ ‘~/tmp/scratch/Rtmph6uGmd’ ‘~/tmp/scratch/RtmphEW4KQ’ ‘~/tmp/scratch/RtmphRog6z’ ‘~/tmp/scratch/RtmphU1CQw’ ‘~/tmp/scratch/RtmpiU4SKs’ ‘~/tmp/scratch/Rtmpj2W8Jy’ ‘~/tmp/scratch/RtmpjnILZj’ ‘~/tmp/scratch/RtmpjrR5S7’ ‘~/tmp/scratch/Rtmpk8jSTw’ ‘~/tmp/scratch/RtmpkH4YJB’ ‘~/tmp/scratch/RtmplPK91w’ ‘~/tmp/scratch/Rtmplcj1MH’ ‘~/tmp/scratch/RtmplfsjMq’ ‘~/tmp/scratch/RtmpmqWTcb’ ‘~/tmp/scratch/Rtmpn0992s’ ‘~/tmp/scratch/Rtmpo0DKPF’ ‘~/tmp/scratch/Rtmpo2ixVw’ ‘~/tmp/scratch/RtmpoR5rKb’ ‘~/tmp/scratch/RtmpoXLHw6’ ‘~/tmp/scratch/Rtmpom70tK’ ‘~/tmp/scratch/Rtmpp1gUr5’ ‘~/tmp/scratch/RtmppKDaZN’ ‘~/tmp/scratch/RtmppZaaF1’ ‘~/tmp/scratch/Rtmpqe7vC9’ ‘~/tmp/scratch/RtmpqpH6fC’ ‘~/tmp/scratch/Rtmpr3EcQW’ ‘~/tmp/scratch/RtmprAGror’ ‘~/tmp/scratch/RtmpsHWByU’ ‘~/tmp/scratch/RtmpsVYKT1’ ‘~/tmp/scratch/Rtmpt2J2Ai’ ‘~/tmp/scratch/RtmpuJVYoE’ ‘~/tmp/scratch/RtmpujCZ87’ ‘~/tmp/scratch/RtmpurGP72’ ‘~/tmp/scratch/RtmpvBAYi3’ ‘~/tmp/scratch/RtmpvFUyH4’ ‘~/tmp/scratch/RtmpvYk0on’ ‘~/tmp/scratch/RtmpvfQjzZ’ ‘~/tmp/scratch/Rtmpw3LqKN’ ‘~/tmp/scratch/RtmpwhuhZI’ ‘~/tmp/scratch/Rtmpx4PPxp’ ‘~/tmp/scratch/RtmpzQqpua’ ‘~/tmp/scratch/RtmpzShPZo’ ‘~/tmp/scratch/RtmpzTv3lN’ ‘~/tmp/scratch/ccgArViI.s’ ‘~/tmp/scratch/xvfb-run.00e6ht’ ‘~/tmp/scratch/xvfb-run.2AuvqJ’ ‘~/tmp/scratch/xvfb-run.2cNtYv’ ‘~/tmp/scratch/xvfb-run.3qWJED’ ‘~/tmp/scratch/xvfb-run.41w78r’ ‘~/tmp/scratch/xvfb-run.4LqNZE’ ‘~/tmp/scratch/xvfb-run.5NMuJZ’ ‘~/tmp/scratch/xvfb-run.6BHhSY’ ‘~/tmp/scratch/xvfb-run.7Bz4LQ’ ‘~/tmp/scratch/xvfb-run.7Hbk5H’ ‘~/tmp/scratch/xvfb-run.8NOJwR’ ‘~/tmp/scratch/xvfb-run.98wwRD’ ‘~/tmp/scratch/xvfb-run.9KdEmT’ ‘~/tmp/scratch/xvfb-run.A4xy9a’ ‘~/tmp/scratch/xvfb-run.C0PVBD’ ‘~/tmp/scratch/xvfb-run.CICEkB’ ‘~/tmp/scratch/xvfb-run.EnVgiW’ ‘~/tmp/scratch/xvfb-run.EuJEbV’ ‘~/tmp/scratch/xvfb-run.FEGfFB’ ‘~/tmp/scratch/xvfb-run.GfMe9G’ ‘~/tmp/scratch/xvfb-run.HcuwAw’ ‘~/tmp/scratch/xvfb-run.I299CB’ ‘~/tmp/scratch/xvfb-run.JNJuzr’ ‘~/tmp/scratch/xvfb-run.JzGQ9Q’ ‘~/tmp/scratch/xvfb-run.KazT1d’ ‘~/tmp/scratch/xvfb-run.Kjb661’ ‘~/tmp/scratch/xvfb-run.L7QYmG’ ‘~/tmp/scratch/xvfb-run.LDIhkz’ ‘~/tmp/scratch/xvfb-run.LpYUHd’ ‘~/tmp/scratch/xvfb-run.MVZZ3b’ ‘~/tmp/scratch/xvfb-run.N2Jzep’ ‘~/tmp/scratch/xvfb-run.N3IcOF’ ‘~/tmp/scratch/xvfb-run.NAp6cu’ ‘~/tmp/scratch/xvfb-run.PSfCsK’ ‘~/tmp/scratch/xvfb-run.Sc07yE’ ‘~/tmp/scratch/xvfb-run.VVgI7W’ ‘~/tmp/scratch/xvfb-run.WDoUck’ ‘~/tmp/scratch/xvfb-run.YZs18O’ ‘~/tmp/scratch/xvfb-run.ZbfJJn’ ‘~/tmp/scratch/xvfb-run.ZgBMvK’ ‘~/tmp/scratch/xvfb-run.ZpAtmo’ ‘~/tmp/scratch/xvfb-run.bRfm5K’ ‘~/tmp/scratch/xvfb-run.blIobH’ ‘~/tmp/scratch/xvfb-run.cEaYlJ’ ‘~/tmp/scratch/xvfb-run.e7HHnQ’ ‘~/tmp/scratch/xvfb-run.eVKtcq’ ‘~/tmp/scratch/xvfb-run.fbh8Ah’ ‘~/tmp/scratch/xvfb-run.gvJnhn’ ‘~/tmp/scratch/xvfb-run.j8ed2i’ ‘~/tmp/scratch/xvfb-run.l6yUcz’ ‘~/tmp/scratch/xvfb-run.mE0pe2’ ‘~/tmp/scratch/xvfb-run.mJUgrh’ ‘~/tmp/scratch/xvfb-run.nOaSjE’ ‘~/tmp/scratch/xvfb-run.otmMDm’ ‘~/tmp/scratch/xvfb-run.ozP7G7’ ‘~/tmp/scratch/xvfb-run.q2NdSL’ ‘~/tmp/scratch/xvfb-run.qQE5DK’ ‘~/tmp/scratch/xvfb-run.rP0AJT’ ‘~/tmp/scratch/xvfb-run.tDqJYK’ ‘~/tmp/scratch/xvfb-run.unuSCM’ ‘~/tmp/scratch/xvfb-run.wLdVJ0’ ‘~/tmp/scratch/xvfb-run.yoEeVr’ ‘~/tmp/scratch/xvfb-run.zMx4kP’ ‘~/tmp/scratch/xvfb-run.zuNy6w’ ‘/dev/shm/sm_segment.gimli1.1001.ee770000.0’ ‘/dev/shm/sm_segment.gimli1.1001.fb3c0000.0’ ‘~/.cache/pocl/uncached/tempfile_qUaHgu’ ‘~/.cache/pocl/uncached/tempfile_zke94o’ Flavor: r-devel-linux-x86_64-debian-gcc

Package contsurvplot

Current CRAN status: OK: 12, NOTE: 1

Version: 0.2.3
Check: for new files in some other directories
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Package simDAG

Current CRAN status: OK: 6, ERROR: 7

Version: 1.0.0
Check: examples
Result: ERROR Running examples in ‘simDAG-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: node_binomial > ### Title: Generate Data from a (Mixed) Binomial Regression Model > ### Aliases: node_binomial > > ### ** Examples > > library(simDAG) > > set.seed(5425) > > # define needed DAG > dag <- empty_dag() + + node("age", type="rnorm", mean=50, sd=4) + + node("sex", type="rbernoulli", p=0.5) + + node("smoking", type="binomial", parents=c("age", "sex"), + betas=c(1.1, 0.4), intercept=-2) > > # define the same DAG, but using a pretty formula > dag <- empty_dag() + + node("age", type="rnorm", mean=50, sd=4) + + node("sex", type="rbernoulli", p=0.5) + + node("smoking", type="binomial", + formula= ~ -2 + age*1.1 + sexTRUE*0.4) > > # simulate data from it > sim_dat <- sim_from_dag(dag=dag, n_sim=100) > > # returning only the estimated probability instead > dag <- empty_dag() + + node("age", type="rnorm", mean=50, sd=4) + + node("sex", type="rbernoulli", p=0.5) + + node("smoking", type="binomial", parents=c("age", "sex"), + betas=c(1.1, 0.4), intercept=-2, return_prob=TRUE) > > sim_dat <- sim_from_dag(dag=dag, n_sim=100) > > ## an example using a random effect > if (requireNamespace("simr")) { + + library(simr) + + dag_mixed <- empty_dag() + + node("School", type="rcategorical", probs=rep(0.1, 10), + labels=LETTERS[1:10]) + + node("Age", type="rnorm", mean=12, sd=2) + + node("Grade", type="binomial", formula= ~ -10 + Age*1.2 + (1|School), + var_corr=0.3) + + sim_dat <- sim_from_dag(dag=dag_mixed, n_sim=100) + } Loading required namespace: simr Loading required package: lme4 Loading required package: Matrix Attaching package: ‘simr’ The following object is masked from ‘package:lme4’: getData Error: An error occured when processing node 'Grade'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [109s/172s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(simDAG) > library(testthat) > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > library(igraph) Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > library(ggdag) Attaching package: 'ggdag' The following object is masked from 'package:stats': filter > > data.table::setDTthreads(1) > > test_check("simDAG") Saving _problems/test_node_lmer-21.R Saving _problems/test_node_lmer-52.R Saving _problems/test_node_lmer-85.R Saving _problems/test_node_lmer-116.R Saving _problems/test_node_lmer-148.R Saving _problems/test_node_lmer-178.R Saving _problems/test_node_lmer-208.R Saving _problems/test_node_lmer-239.R Saving _problems/test_node_lmer-272.R Saving _problems/test_node_lmer-393.R Saving _problems/test_node_zeroinfl-114.R t = 1 node = sickness2 t = 1 node = sickness1 t = 2 node = sickness2 t = 2 node = sickness1 t = 3 node = sickness2 t = 3 node = sickness1 t = 4 node = sickness2 t = 4 node = sickness1 t = 5 node = sickness2 t = 5 node = sickness1 starting worker pid=2131454 on localhost:11940 at 11:10:14.921 starting worker pid=2131455 on localhost:11940 at 11:10:15.033 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: simDAG Loading required package: foreach Loading required package: rngtools loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=2132926 on localhost:11940 at 11:10:19.675 starting worker pid=2132925 on localhost:11940 at 11:10:19.725 Loading required package: simDAG Loading required package: simDAG loaded simDAG and set parent environment loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: rngtools Loading required package: foreach Loading required package: rngtools starting worker pid=2135067 on localhost:11940 at 11:10:26.364 starting worker pid=2135066 on localhost:11940 at 11:10:26.483 Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach loaded simDAG and set parent environment Loading required package: rngtools Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools starting worker pid=2137686 on localhost:11940 at 11:10:34.765 starting worker pid=2137687 on localhost:11940 at 11:10:34.854 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: simDAG Loading required package: rngtools loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=2139536 on localhost:11940 at 11:10:40.308 starting worker pid=2139537 on localhost:11940 at 11:10:40.340 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach loaded simDAG and set parent environment Loading required package: rngtools Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%starting worker pid=2140722 on localhost:11940 at 11:10:45.393 starting worker pid=2140721 on localhost:11940 at 11:10:45.520 | | | 0%Loading required package: simDAG Loading required package: simDAG loaded simDAG and set parent environment loaded simDAG and set parent environment Attaching package: ‘data.table’ Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%[ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] ══ Skipped tests (56) ══════════════════════════════════════════════════════════ • On CRAN (56): 'test_DAG.network_S3.r:4:1', 'test_DAG.network_S3.r:10:1', 'test_DAG.network_S3.r:18:1', 'test_DAG.network_S3.r:24:1', 'test_DAG.network_S3.r:32:1', 'test_DAG.network_S3.r:44:1', 'test_DAG.network_S3.r:50:1', 'test_DAG.network_S3.r:58:1', 'test_DAG.network_S3.r:64:1', 'test_DAG.network_S3.r:72:1', 'test_DAG.node_S3.r:4:1', 'test_DAG.node_S3.r:9:1', 'test_DAG.node_S3.r:14:1', 'test_DAG.node_S3.r:19:1', 'test_DAG.node_S3.r:24:1', 'test_DAG.node_S3.r:32:1', 'test_DAG.node_S3.r:37:1', 'test_DAG.node_S3.r:42:1', 'test_DAG.node_S3.r:47:1', 'test_DAG.node_S3.r:52:1', 'test_dag.r:14:1', 'test_dag.r:21:1', 'test_dag.r:34:1', 'test_dag.r:44:1', 'test_dag.r:51:1', 'test_dag.r:64:1', 'test_node.r:548:1', 'test_node_rsurv.r:99:3', 'test_plot.DAG.r:11:1', 'test_plot.DAG.r:15:1', 'test_plot.DAG.r:19:1', 'test_plot.DAG.r:23:1', 'test_plot.DAG.r:27:1', 'test_plot.DAG.r:31:1', 'test_plot.DAG.r:35:1', 'test_plot.DAG.r:40:1', 'test_plot.DAG.r:44:1', 'test_plot.DAG.r:52:1', 'test_plot.DAG.r:59:1', 'test_plot.DAG.r:64:1', 'test_plot.DAG.r:69:1', 'test_plot.DAG.r:100:1', 'test_plot.DAG.r:104:1', 'test_plot.DAG.r:108:1', 'test_plot.simDT.r:24:1', 'test_plot.simDT.r:28:1', 'test_plot.simDT.r:32:1', 'test_plot.simDT.r:36:1', 'test_plot.simDT.r:40:1', 'test_plot.simDT.r:48:1', 'test_plot.simDT.r:56:1', 'test_simDT_S3.r:11:1', 'test_simDT_S3.r:15:1', 'test_simDT_S3.r:20:1', 'test_simDT_S3.r:25:1', 'test_sim_discrete_event.r:693:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_node_lmer.r:21:3'): simple random effect ─────────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:21:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:52:3'): simple random effect in disrete-time simulation ── Error: An error occured when processing node 'Y' at time t = 1. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_discrete_time(...) at test_node_lmer.r:52:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:85:3'): simple random effect + categorical fixed effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:85:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:116:3'): simple random effect + interaction effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:116:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:148:3'): simple random effect + interaction effect of categorical vars ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:148:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:178:3'): simple random effect + cubic terms ──────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:178:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:208:3'): simple random effect + ONLY cubic terms ─── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:208:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:239:3'): multiple random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=2, npar=2, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:239:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:272:3'): with random effects and random slopes ───── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=3, npar=3, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:272:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:393:3'): simple random effect with non-default link ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:393:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_zeroinfl.r:114:3'): with random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_zeroinfl.r:114:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘simDAG.Rmd’ using rmarkdown --- finished re-building ‘simDAG.Rmd’ --- re-building ‘v_cookbook.Rmd’ using rmarkdown Quitting from v_cookbook.Rmd:132-140 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! An error occured when processing node 'Outcome'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) --- Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 1000) 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'v_cookbook.Rmd' failed with diagnostics: An error occured when processing node 'Outcome'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) --- failed re-building ‘v_cookbook.Rmd’ --- re-building ‘v_covid_example.Rmd’ using rmarkdown --- finished re-building ‘v_covid_example.Rmd’ --- re-building ‘v_custom_nodes.Rmd’ using rmarkdown --- finished re-building ‘v_custom_nodes.Rmd’ --- re-building ‘v_sim_discrete_event.Rmd’ using rmarkdown --- finished re-building ‘v_sim_discrete_event.Rmd’ --- re-building ‘v_sim_discrete_time.Rmd’ using rmarkdown --- finished re-building ‘v_sim_discrete_time.Rmd’ --- re-building ‘v_sim_from_dag.Rmd’ using rmarkdown --- finished re-building ‘v_sim_from_dag.Rmd’ --- re-building ‘v_sim_networks.Rmd’ using rmarkdown --- finished re-building ‘v_sim_networks.Rmd’ --- re-building ‘v_using_formulas.Rmd’ using rmarkdown --- finished re-building ‘v_using_formulas.Rmd’ SUMMARY: processing the following file failed: ‘v_cookbook.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [68s/99s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(simDAG) > library(testthat) > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > library(igraph) Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > library(ggdag) Attaching package: 'ggdag' The following object is masked from 'package:stats': filter > > data.table::setDTthreads(1) > > test_check("simDAG") Saving _problems/test_node_lmer-21.R Saving _problems/test_node_lmer-52.R Saving _problems/test_node_lmer-85.R Saving _problems/test_node_lmer-116.R Saving _problems/test_node_lmer-148.R Saving _problems/test_node_lmer-178.R Saving _problems/test_node_lmer-208.R Saving _problems/test_node_lmer-239.R Saving _problems/test_node_lmer-272.R Saving _problems/test_node_lmer-393.R Saving _problems/test_node_zeroinfl-114.R t = 1 node = sickness2 t = 1 node = sickness1 t = 2 node = sickness2 t = 2 node = sickness1 t = 3 node = sickness2 t = 3 node = sickness1 t = 4 node = sickness2 t = 4 node = sickness1 t = 5 node = sickness2 t = 5 node = sickness1 starting worker pid=3643274 on localhost:11817 at 19:53:47.047 starting worker pid=3643275 on localhost:11817 at 19:53:47.133 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach loaded simDAG and set parent environment Loading required package: rngtools Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=3662914 on localhost:11817 at 19:53:51.392 starting worker pid=3662915 on localhost:11817 at 19:53:51.449 Loading required package: simDAG Loading required package: simDAG loaded simDAG and set parent environment loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools Loading required package: rngtools starting worker pid=3685577 on localhost:11817 at 19:53:56.137 starting worker pid=3685576 on localhost:11817 at 19:53:56.290 Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools starting worker pid=3707874 on localhost:11817 at 19:54:00.813 starting worker pid=3707875 on localhost:11817 at 19:54:00.892 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach loaded simDAG and set parent environment Loading required package: rngtools Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=3728109 on localhost:11817 at 19:54:05.097 starting worker pid=3728110 on localhost:11817 at 19:54:05.176 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%starting worker pid=3744388 on localhost:11817 at 19:54:08.682 starting worker pid=3744393 on localhost:11817 at 19:54:08.681 | | | 0%Loading required package: simDAG Loading required package: simDAG loaded simDAG and set parent environment loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%[ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] ══ Skipped tests (56) ══════════════════════════════════════════════════════════ • On CRAN (56): 'test_DAG.network_S3.r:4:1', 'test_DAG.network_S3.r:10:1', 'test_DAG.network_S3.r:18:1', 'test_DAG.network_S3.r:24:1', 'test_DAG.network_S3.r:32:1', 'test_DAG.network_S3.r:44:1', 'test_DAG.network_S3.r:50:1', 'test_DAG.network_S3.r:58:1', 'test_DAG.network_S3.r:64:1', 'test_DAG.network_S3.r:72:1', 'test_DAG.node_S3.r:4:1', 'test_DAG.node_S3.r:9:1', 'test_DAG.node_S3.r:14:1', 'test_DAG.node_S3.r:19:1', 'test_DAG.node_S3.r:24:1', 'test_DAG.node_S3.r:32:1', 'test_DAG.node_S3.r:37:1', 'test_DAG.node_S3.r:42:1', 'test_DAG.node_S3.r:47:1', 'test_DAG.node_S3.r:52:1', 'test_dag.r:14:1', 'test_dag.r:21:1', 'test_dag.r:34:1', 'test_dag.r:44:1', 'test_dag.r:51:1', 'test_dag.r:64:1', 'test_node.r:548:1', 'test_node_rsurv.r:99:3', 'test_plot.DAG.r:11:1', 'test_plot.DAG.r:15:1', 'test_plot.DAG.r:19:1', 'test_plot.DAG.r:23:1', 'test_plot.DAG.r:27:1', 'test_plot.DAG.r:31:1', 'test_plot.DAG.r:35:1', 'test_plot.DAG.r:40:1', 'test_plot.DAG.r:44:1', 'test_plot.DAG.r:52:1', 'test_plot.DAG.r:59:1', 'test_plot.DAG.r:64:1', 'test_plot.DAG.r:69:1', 'test_plot.DAG.r:100:1', 'test_plot.DAG.r:104:1', 'test_plot.DAG.r:108:1', 'test_plot.simDT.r:24:1', 'test_plot.simDT.r:28:1', 'test_plot.simDT.r:32:1', 'test_plot.simDT.r:36:1', 'test_plot.simDT.r:40:1', 'test_plot.simDT.r:48:1', 'test_plot.simDT.r:56:1', 'test_simDT_S3.r:11:1', 'test_simDT_S3.r:15:1', 'test_simDT_S3.r:20:1', 'test_simDT_S3.r:25:1', 'test_sim_discrete_event.r:693:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_node_lmer.r:21:3'): simple random effect ─────────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:21:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:52:3'): simple random effect in disrete-time simulation ── Error: An error occured when processing node 'Y' at time t = 1. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_discrete_time(...) at test_node_lmer.r:52:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:85:3'): simple random effect + categorical fixed effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:85:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:116:3'): simple random effect + interaction effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:116:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:148:3'): simple random effect + interaction effect of categorical vars ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:148:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:178:3'): simple random effect + cubic terms ──────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:178:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:208:3'): simple random effect + ONLY cubic terms ─── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:208:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:239:3'): multiple random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=2, npar=2, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:239:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:272:3'): with random effects and random slopes ───── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=3, npar=3, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:272:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:393:3'): simple random effect with non-default link ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:393:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_zeroinfl.r:114:3'): with random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_zeroinfl.r:114:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp056lIL’ ‘~/tmp/scratch/Rtmp0zNHPe’ ‘~/tmp/scratch/Rtmp1Pk4oR’ ‘~/tmp/scratch/Rtmp1uW8Mo’ ‘~/tmp/scratch/Rtmp2QHD55’ ‘~/tmp/scratch/Rtmp2lJy1L’ ‘~/tmp/scratch/Rtmp2pjHZ8’ ‘~/tmp/scratch/Rtmp2x5kKf’ ‘~/tmp/scratch/Rtmp33TEJL’ ‘~/tmp/scratch/Rtmp3HCaCE’ ‘~/tmp/scratch/Rtmp3arOyk’ ‘~/tmp/scratch/Rtmp3dZFSK’ ‘~/tmp/scratch/Rtmp3se2OJ’ ‘~/tmp/scratch/Rtmp4094VB’ ‘~/tmp/scratch/Rtmp4GRDwn’ ‘~/tmp/scratch/Rtmp4aqoyT’ ‘~/tmp/scratch/Rtmp4fiC1C’ ‘~/tmp/scratch/Rtmp5LY64i’ ‘~/tmp/scratch/Rtmp5rca1o’ ‘~/tmp/scratch/Rtmp62bQgm’ ‘~/tmp/scratch/Rtmp66EMYr’ ‘~/tmp/scratch/Rtmp6WyV63’ ‘~/tmp/scratch/Rtmp6gCt6o’ ‘~/tmp/scratch/Rtmp6nXofa’ ‘~/tmp/scratch/Rtmp76vUtL’ ‘~/tmp/scratch/Rtmp8CipOj’ ‘~/tmp/scratch/Rtmp8VPXJN’ ‘~/tmp/scratch/Rtmp8YrZFc’ ‘~/tmp/scratch/Rtmp8exr6P’ ‘~/tmp/scratch/Rtmp8xayvb’ ‘~/tmp/scratch/Rtmp96eQvH’ ‘~/tmp/scratch/Rtmp9DMfpM’ ‘~/tmp/scratch/Rtmp9kSo8l’ ‘~/tmp/scratch/Rtmp9w9JgW’ ‘~/tmp/scratch/RtmpACrnED’ 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‘~/tmp/scratch/xvfb-run.Y1I7ka’ ‘~/tmp/scratch/xvfb-run.YSVHQw’ ‘~/tmp/scratch/xvfb-run.YTj8ZC’ ‘~/tmp/scratch/xvfb-run.YtNM8K’ ‘~/tmp/scratch/xvfb-run.Z2Pk70’ ‘~/tmp/scratch/xvfb-run.ZpX0FT’ ‘~/tmp/scratch/xvfb-run.cD3fe5’ ‘~/tmp/scratch/xvfb-run.cobWCI’ ‘~/tmp/scratch/xvfb-run.cvEZZM’ ‘~/tmp/scratch/xvfb-run.dWfxAr’ ‘~/tmp/scratch/xvfb-run.eMwJUl’ ‘~/tmp/scratch/xvfb-run.eRtmXD’ ‘~/tmp/scratch/xvfb-run.elA5fG’ ‘~/tmp/scratch/xvfb-run.eviaCT’ ‘~/tmp/scratch/xvfb-run.h8YG3k’ ‘~/tmp/scratch/xvfb-run.hmflzY’ ‘~/tmp/scratch/xvfb-run.hwAvfG’ ‘~/tmp/scratch/xvfb-run.ilV0AM’ ‘~/tmp/scratch/xvfb-run.kOphp2’ ‘~/tmp/scratch/xvfb-run.kZAJqL’ ‘~/tmp/scratch/xvfb-run.mB2DCE’ ‘~/tmp/scratch/xvfb-run.nR6NWW’ ‘~/tmp/scratch/xvfb-run.nh6Uc5’ ‘~/tmp/scratch/xvfb-run.nsljpB’ ‘~/tmp/scratch/xvfb-run.qrx6x8’ ‘~/tmp/scratch/xvfb-run.tKbXFw’ ‘~/tmp/scratch/xvfb-run.to3cLM’ ‘~/tmp/scratch/xvfb-run.vbH5eK’ ‘~/tmp/scratch/xvfb-run.wNJ19K’ ‘~/tmp/scratch/xvfb-run.wuZumw’ ‘~/tmp/scratch/xvfb-run.yi903S’ ‘~/tmp/scratch/xvfb-run.z1GC4O’ ‘/dev/shm/sm_segment.gimli1.1001.7ec70000.0’ ‘~/.cache/pocl/uncached/tempfile_Zzkel2’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: examples
Result: ERROR Running examples in 'simDAG-Ex.R' failed The error most likely occurred in: > ### Name: node_binomial > ### Title: Generate Data from a (Mixed) Binomial Regression Model > ### Aliases: node_binomial > > ### ** Examples > > library(simDAG) > > set.seed(5425) > > # define needed DAG > dag <- empty_dag() + + node("age", type="rnorm", mean=50, sd=4) + + node("sex", type="rbernoulli", p=0.5) + + node("smoking", type="binomial", parents=c("age", "sex"), + betas=c(1.1, 0.4), intercept=-2) > > # define the same DAG, but using a pretty formula > dag <- empty_dag() + + node("age", type="rnorm", mean=50, sd=4) + + node("sex", type="rbernoulli", p=0.5) + + node("smoking", type="binomial", + formula= ~ -2 + age*1.1 + sexTRUE*0.4) > > # simulate data from it > sim_dat <- sim_from_dag(dag=dag, n_sim=100) > > # returning only the estimated probability instead > dag <- empty_dag() + + node("age", type="rnorm", mean=50, sd=4) + + node("sex", type="rbernoulli", p=0.5) + + node("smoking", type="binomial", parents=c("age", "sex"), + betas=c(1.1, 0.4), intercept=-2, return_prob=TRUE) > > sim_dat <- sim_from_dag(dag=dag, n_sim=100) > > ## an example using a random effect > if (requireNamespace("simr")) { + + library(simr) + + dag_mixed <- empty_dag() + + node("School", type="rcategorical", probs=rep(0.1, 10), + labels=LETTERS[1:10]) + + node("Age", type="rnorm", mean=12, sd=2) + + node("Grade", type="binomial", formula= ~ -10 + Age*1.2 + (1|School), + var_corr=0.3) + + sim_dat <- sim_from_dag(dag=dag_mixed, n_sim=100) + } Loading required namespace: simr Loading required package: lme4 Loading required package: Matrix Attaching package: 'simr' The following object is masked from 'package:lme4': getData Error: An error occured when processing node 'Grade'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Execution halted Flavor: r-devel-windows-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running 'testthat.R' [107s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(simDAG) > library(testthat) > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > library(igraph) Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > library(ggdag) Attaching package: 'ggdag' The following object is masked from 'package:stats': filter > > data.table::setDTthreads(1) > > test_check("simDAG") Saving _problems/test_node_lmer-21.R Saving _problems/test_node_lmer-52.R Saving _problems/test_node_lmer-85.R Saving _problems/test_node_lmer-116.R Saving _problems/test_node_lmer-148.R Saving _problems/test_node_lmer-178.R Saving _problems/test_node_lmer-208.R Saving _problems/test_node_lmer-239.R Saving _problems/test_node_lmer-272.R Saving _problems/test_node_lmer-393.R Saving _problems/test_node_zeroinfl-114.R t = 1 node = sickness2 t = 1 node = sickness1 t = 2 node = sickness2 t = 2 node = sickness1 t = 3 node = sickness2 t = 3 node = sickness1 t = 4 node = sickness2 t = 4 node = sickness1 t = 5 node = sickness2 t = 5 node = sickness1 starting worker pid=92912 on localhost:11980 at 14:19:46.342 starting worker pid=63184 on localhost:11980 at 14:19:46.346 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=113416 on localhost:11980 at 14:19:48.903 starting worker pid=20020 on localhost:11980 at 14:19:48.919 Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools starting worker pid=48672 on localhost:11980 at 14:19:52.240 starting worker pid=97304 on localhost:11980 at 14:19:52.270 Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools starting worker pid=35724 on localhost:11980 at 14:19:55.939 starting worker pid=74396 on localhost:11980 at 14:19:55.955 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=48228 on localhost:11980 at 14:19:59.114 starting worker pid=90800 on localhost:11980 at 14:19:59.173 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%starting worker pid=112076 on localhost:11980 at 14:20:01.888 starting worker pid=103252 on localhost:11980 at 14:20:01.909 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%[ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] ══ Skipped tests (56) ══════════════════════════════════════════════════════════ • On CRAN (56): 'test_DAG.network_S3.r:4:1', 'test_DAG.network_S3.r:10:1', 'test_DAG.network_S3.r:18:1', 'test_DAG.network_S3.r:24:1', 'test_DAG.network_S3.r:32:1', 'test_DAG.network_S3.r:44:1', 'test_DAG.network_S3.r:50:1', 'test_DAG.network_S3.r:58:1', 'test_DAG.network_S3.r:64:1', 'test_DAG.network_S3.r:72:1', 'test_DAG.node_S3.r:4:1', 'test_DAG.node_S3.r:9:1', 'test_DAG.node_S3.r:14:1', 'test_DAG.node_S3.r:19:1', 'test_DAG.node_S3.r:24:1', 'test_DAG.node_S3.r:32:1', 'test_DAG.node_S3.r:37:1', 'test_DAG.node_S3.r:42:1', 'test_DAG.node_S3.r:47:1', 'test_DAG.node_S3.r:52:1', 'test_dag.r:14:1', 'test_dag.r:21:1', 'test_dag.r:34:1', 'test_dag.r:44:1', 'test_dag.r:51:1', 'test_dag.r:64:1', 'test_node.r:548:1', 'test_node_rsurv.r:99:3', 'test_plot.DAG.r:11:1', 'test_plot.DAG.r:15:1', 'test_plot.DAG.r:19:1', 'test_plot.DAG.r:23:1', 'test_plot.DAG.r:27:1', 'test_plot.DAG.r:31:1', 'test_plot.DAG.r:35:1', 'test_plot.DAG.r:40:1', 'test_plot.DAG.r:44:1', 'test_plot.DAG.r:52:1', 'test_plot.DAG.r:59:1', 'test_plot.DAG.r:64:1', 'test_plot.DAG.r:69:1', 'test_plot.DAG.r:100:1', 'test_plot.DAG.r:104:1', 'test_plot.DAG.r:108:1', 'test_plot.simDT.r:24:1', 'test_plot.simDT.r:28:1', 'test_plot.simDT.r:32:1', 'test_plot.simDT.r:36:1', 'test_plot.simDT.r:40:1', 'test_plot.simDT.r:48:1', 'test_plot.simDT.r:56:1', 'test_simDT_S3.r:11:1', 'test_simDT_S3.r:15:1', 'test_simDT_S3.r:20:1', 'test_simDT_S3.r:25:1', 'test_sim_discrete_event.r:693:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_node_lmer.r:21:3'): simple random effect ─────────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:21:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:52:3'): simple random effect in disrete-time simulation ── Error: An error occured when processing node 'Y' at time t = 1. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_discrete_time(...) at test_node_lmer.r:52:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:85:3'): simple random effect + categorical fixed effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:85:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:116:3'): simple random effect + interaction effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:116:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:148:3'): simple random effect + interaction effect of categorical vars ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:148:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:178:3'): simple random effect + cubic terms ──────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:178:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:208:3'): simple random effect + ONLY cubic terms ─── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:208:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:239:3'): multiple random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=2, npar=2, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:239:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:272:3'): with random effects and random slopes ───── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=3, npar=3, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:272:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:393:3'): simple random effect with non-default link ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:393:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_zeroinfl.r:114:3'): with random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_zeroinfl.r:114:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'simDAG.Rmd' using rmarkdown --- finished re-building 'simDAG.Rmd' --- re-building 'v_cookbook.Rmd' using rmarkdown Quitting from v_cookbook.Rmd:132-140 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! An error occured when processing node 'Outcome'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) --- Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 1000) 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'v_cookbook.Rmd' failed with diagnostics: An error occured when processing node 'Outcome'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) --- failed re-building 'v_cookbook.Rmd' --- re-building 'v_covid_example.Rmd' using rmarkdown --- finished re-building 'v_covid_example.Rmd' --- re-building 'v_custom_nodes.Rmd' using rmarkdown --- finished re-building 'v_custom_nodes.Rmd' --- re-building 'v_sim_discrete_event.Rmd' using rmarkdown --- finished re-building 'v_sim_discrete_event.Rmd' --- re-building 'v_sim_discrete_time.Rmd' using rmarkdown --- finished re-building 'v_sim_discrete_time.Rmd' --- re-building 'v_sim_from_dag.Rmd' using rmarkdown --- finished re-building 'v_sim_from_dag.Rmd' --- re-building 'v_sim_networks.Rmd' using rmarkdown --- finished re-building 'v_sim_networks.Rmd' --- re-building 'v_using_formulas.Rmd' using rmarkdown --- finished re-building 'v_using_formulas.Rmd' SUMMARY: processing the following file failed: 'v_cookbook.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [104s/156s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(simDAG) > library(testthat) > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > library(igraph) Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > library(ggdag) Attaching package: 'ggdag' The following object is masked from 'package:stats': filter > > data.table::setDTthreads(1) > > test_check("simDAG") Saving _problems/test_node_lmer-21.R Saving _problems/test_node_lmer-52.R Saving _problems/test_node_lmer-85.R Saving _problems/test_node_lmer-116.R Saving _problems/test_node_lmer-148.R Saving _problems/test_node_lmer-178.R Saving _problems/test_node_lmer-208.R Saving _problems/test_node_lmer-239.R Saving _problems/test_node_lmer-272.R Saving _problems/test_node_lmer-393.R Saving _problems/test_node_zeroinfl-114.R t = 1 node = sickness2 t = 1 node = sickness1 t = 2 node = sickness2 t = 2 node = sickness1 t = 3 node = sickness2 t = 3 node = sickness1 t = 4 node = sickness2 t = 4 node = sickness1 t = 5 node = sickness2 t = 5 node = sickness1 starting worker pid=809398 on localhost:11861 at 22:19:42.653 starting worker pid=809399 on localhost:11861 at 22:19:42.776 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=810305 on localhost:11861 at 22:19:46.870 starting worker pid=810306 on localhost:11861 at 22:19:46.909 Loading required package: simDAG Loading required package: simDAG loaded simDAG and set parent environment loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools Loading required package: rngtools starting worker pid=811892 on localhost:11861 at 22:19:52.741 starting worker pid=811893 on localhost:11861 at 22:19:52.786 Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% loaded simDAG and set parent environment Loading required package: foreach Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools Loading required package: rngtools starting worker pid=814237 on localhost:11861 at 22:19:59.779 starting worker pid=814238 on localhost:11861 at 22:19:59.813 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: rngtools Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=815944 on localhost:11861 at 22:20:05.327 starting worker pid=815943 on localhost:11861 at 22:20:05.362 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ loaded simDAG and set parent environment The following object is masked from ‘package:base’: %notin% Loading required package: foreach Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: rngtools Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%starting worker pid=817347 on localhost:11861 at 22:20:09.876 starting worker pid=817348 on localhost:11861 at 22:20:09.964 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: simDAG Loading required package: rngtools loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%[ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] ══ Skipped tests (56) ══════════════════════════════════════════════════════════ • On CRAN (56): 'test_DAG.network_S3.r:4:1', 'test_DAG.network_S3.r:10:1', 'test_DAG.network_S3.r:18:1', 'test_DAG.network_S3.r:24:1', 'test_DAG.network_S3.r:32:1', 'test_DAG.network_S3.r:44:1', 'test_DAG.network_S3.r:50:1', 'test_DAG.network_S3.r:58:1', 'test_DAG.network_S3.r:64:1', 'test_DAG.network_S3.r:72:1', 'test_DAG.node_S3.r:4:1', 'test_DAG.node_S3.r:9:1', 'test_DAG.node_S3.r:14:1', 'test_DAG.node_S3.r:19:1', 'test_DAG.node_S3.r:24:1', 'test_DAG.node_S3.r:32:1', 'test_DAG.node_S3.r:37:1', 'test_DAG.node_S3.r:42:1', 'test_DAG.node_S3.r:47:1', 'test_DAG.node_S3.r:52:1', 'test_dag.r:14:1', 'test_dag.r:21:1', 'test_dag.r:34:1', 'test_dag.r:44:1', 'test_dag.r:51:1', 'test_dag.r:64:1', 'test_node.r:548:1', 'test_node_rsurv.r:99:3', 'test_plot.DAG.r:11:1', 'test_plot.DAG.r:15:1', 'test_plot.DAG.r:19:1', 'test_plot.DAG.r:23:1', 'test_plot.DAG.r:27:1', 'test_plot.DAG.r:31:1', 'test_plot.DAG.r:35:1', 'test_plot.DAG.r:40:1', 'test_plot.DAG.r:44:1', 'test_plot.DAG.r:52:1', 'test_plot.DAG.r:59:1', 'test_plot.DAG.r:64:1', 'test_plot.DAG.r:69:1', 'test_plot.DAG.r:100:1', 'test_plot.DAG.r:104:1', 'test_plot.DAG.r:108:1', 'test_plot.simDT.r:24:1', 'test_plot.simDT.r:28:1', 'test_plot.simDT.r:32:1', 'test_plot.simDT.r:36:1', 'test_plot.simDT.r:40:1', 'test_plot.simDT.r:48:1', 'test_plot.simDT.r:56:1', 'test_simDT_S3.r:11:1', 'test_simDT_S3.r:15:1', 'test_simDT_S3.r:20:1', 'test_simDT_S3.r:25:1', 'test_sim_discrete_event.r:693:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_node_lmer.r:21:3'): simple random effect ─────────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:21:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:52:3'): simple random effect in disrete-time simulation ── Error: An error occured when processing node 'Y' at time t = 1. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_discrete_time(...) at test_node_lmer.r:52:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:85:3'): simple random effect + categorical fixed effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:85:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:116:3'): simple random effect + interaction effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:116:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:148:3'): simple random effect + interaction effect of categorical vars ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:148:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:178:3'): simple random effect + cubic terms ──────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:178:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:208:3'): simple random effect + ONLY cubic terms ─── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:208:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:239:3'): multiple random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=2, npar=2, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:239:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:272:3'): with random effects and random slopes ───── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=3, npar=3, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:272:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:393:3'): simple random effect with non-default link ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:393:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_zeroinfl.r:114:3'): with random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_zeroinfl.r:114:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [107s/171s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(simDAG) > library(testthat) > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > library(igraph) Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > library(ggdag) Attaching package: 'ggdag' The following object is masked from 'package:stats': filter > > data.table::setDTthreads(1) > > test_check("simDAG") Saving _problems/test_node_lmer-21.R Saving _problems/test_node_lmer-52.R Saving _problems/test_node_lmer-85.R Saving _problems/test_node_lmer-116.R Saving _problems/test_node_lmer-148.R Saving _problems/test_node_lmer-178.R Saving _problems/test_node_lmer-208.R Saving _problems/test_node_lmer-239.R Saving _problems/test_node_lmer-272.R Saving _problems/test_node_lmer-393.R Saving _problems/test_node_zeroinfl-114.R t = 1 node = sickness2 t = 1 node = sickness1 t = 2 node = sickness2 t = 2 node = sickness1 t = 3 node = sickness2 t = 3 node = sickness1 t = 4 node = sickness2 t = 4 node = sickness1 t = 5 node = sickness2 t = 5 node = sickness1 starting worker pid=2786841 on localhost:11771 at 22:14:24.299 starting worker pid=2786840 on localhost:11771 at 22:14:24.405 | | | 0%Loading required package: simDAG Loading required package: simDAG loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=2788106 on localhost:11771 at 22:14:28.904 starting worker pid=2788105 on localhost:11771 at 22:14:28.908 Loading required package: simDAG Loading required package: simDAG loaded simDAG and set parent environment loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Attaching package: ‘data.table’ Loading required package: foreach The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools Loading required package: rngtools starting worker pid=2790604 on localhost:11771 at 22:14:36.087 starting worker pid=2790605 on localhost:11771 at 22:14:36.104 Loading required package: simDAG Loading required package: simDAG loaded simDAG and set parent environment loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools starting worker pid=2792619 on localhost:11771 at 22:14:43.428 starting worker pid=2792620 on localhost:11771 at 22:14:43.515 | | | 0%Loading required package: simDAG Loading required package: simDAG loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% loaded simDAG and set parent environment Loading required package: foreach Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: rngtools Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=2794157 on localhost:11771 at 22:14:48.901 starting worker pid=2794156 on localhost:11771 at 22:14:48.911 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools loaded simDAG and set parent environment Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%starting worker pid=2796903 on localhost:11771 at 22:14:52.994 starting worker pid=2796904 on localhost:11771 at 22:14:53.112 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: simDAG Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach loaded simDAG and set parent environment Loading required package: rngtools Attaching package: ‘data.table’ The following object is masked from ‘package:base’: %notin% Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%[ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] ══ Skipped tests (56) ══════════════════════════════════════════════════════════ • On CRAN (56): 'test_DAG.network_S3.r:4:1', 'test_DAG.network_S3.r:10:1', 'test_DAG.network_S3.r:18:1', 'test_DAG.network_S3.r:24:1', 'test_DAG.network_S3.r:32:1', 'test_DAG.network_S3.r:44:1', 'test_DAG.network_S3.r:50:1', 'test_DAG.network_S3.r:58:1', 'test_DAG.network_S3.r:64:1', 'test_DAG.network_S3.r:72:1', 'test_DAG.node_S3.r:4:1', 'test_DAG.node_S3.r:9:1', 'test_DAG.node_S3.r:14:1', 'test_DAG.node_S3.r:19:1', 'test_DAG.node_S3.r:24:1', 'test_DAG.node_S3.r:32:1', 'test_DAG.node_S3.r:37:1', 'test_DAG.node_S3.r:42:1', 'test_DAG.node_S3.r:47:1', 'test_DAG.node_S3.r:52:1', 'test_dag.r:14:1', 'test_dag.r:21:1', 'test_dag.r:34:1', 'test_dag.r:44:1', 'test_dag.r:51:1', 'test_dag.r:64:1', 'test_node.r:548:1', 'test_node_rsurv.r:99:3', 'test_plot.DAG.r:11:1', 'test_plot.DAG.r:15:1', 'test_plot.DAG.r:19:1', 'test_plot.DAG.r:23:1', 'test_plot.DAG.r:27:1', 'test_plot.DAG.r:31:1', 'test_plot.DAG.r:35:1', 'test_plot.DAG.r:40:1', 'test_plot.DAG.r:44:1', 'test_plot.DAG.r:52:1', 'test_plot.DAG.r:59:1', 'test_plot.DAG.r:64:1', 'test_plot.DAG.r:69:1', 'test_plot.DAG.r:100:1', 'test_plot.DAG.r:104:1', 'test_plot.DAG.r:108:1', 'test_plot.simDT.r:24:1', 'test_plot.simDT.r:28:1', 'test_plot.simDT.r:32:1', 'test_plot.simDT.r:36:1', 'test_plot.simDT.r:40:1', 'test_plot.simDT.r:48:1', 'test_plot.simDT.r:56:1', 'test_simDT_S3.r:11:1', 'test_simDT_S3.r:15:1', 'test_simDT_S3.r:20:1', 'test_simDT_S3.r:25:1', 'test_sim_discrete_event.r:693:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_node_lmer.r:21:3'): simple random effect ─────────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:21:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:52:3'): simple random effect in disrete-time simulation ── Error: An error occured when processing node 'Y' at time t = 1. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_discrete_time(...) at test_node_lmer.r:52:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:85:3'): simple random effect + categorical fixed effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:85:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:116:3'): simple random effect + interaction effect ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:116:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:148:3'): simple random effect + interaction effect of categorical vars ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:148:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:178:3'): simple random effect + cubic terms ──────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:178:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:208:3'): simple random effect + ONLY cubic terms ─── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:208:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:239:3'): multiple random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=2, npar=2, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:239:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:272:3'): with random effects and random slopes ───── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=3, npar=3, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:272:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_lmer.r:393:3'): simple random effect with non-default link ── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag_bin, n_sim = 100) at test_node_lmer.r:393:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_zeroinfl.r:114:3'): with random effects ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in mkMerMod(rho, opt, glmod$reTrms, fr = glmod$fr, mc = mcout, lme4conv = cc): unexpected parameter vector length: length(pars)=1, npar=1, nAGQ=1; (expected length(pars)==npar iff nAGQ==0) Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_zeroinfl.r:114:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 11 | WARN 14 | SKIP 56 | PASS 1032 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 1.0.1
Check: tests
Result: ERROR Running 'testthat.R' [98s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(simDAG) > library(testthat) > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > library(igraph) Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > library(ggdag) Attaching package: 'ggdag' The following object is masked from 'package:stats': filter > > data.table::setDTthreads(1) > > test_check("simDAG") Saving _problems/test_network-108.R Saving _problems/test_node_rsurv-11.R Saving _problems/test_node_rsurv-24.R Saving _problems/test_node_rsurv-37.R Saving _problems/test_node_rsurv-50.R Saving _problems/test_node_rsurv-63.R Saving _problems/test_node_rsurv-76.R Saving _problems/test_node_rsurv-90.R t = 1 node = sickness2 t = 1 node = sickness1 t = 2 node = sickness2 t = 2 node = sickness1 t = 3 node = sickness2 t = 3 node = sickness1 t = 4 node = sickness2 t = 4 node = sickness1 t = 5 node = sickness2 t = 5 node = sickness1 Saving _problems/test_sim_from_dag-166.R starting worker pid=58576 on localhost:11412 at 02:16:49.273 starting worker pid=27672 on localhost:11412 at 02:16:49.307 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=19716 on localhost:11412 at 02:16:51.900 starting worker pid=44124 on localhost:11412 at 02:16:51.924 Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools starting worker pid=80520 on localhost:11412 at 02:16:55.143 starting worker pid=19424 on localhost:11412 at 02:16:55.153 Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools starting worker pid=87480 on localhost:11412 at 02:16:58.603 starting worker pid=108672 on localhost:11412 at 02:16:58.629 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=118476 on localhost:11412 at 02:17:01.523 starting worker pid=95564 on localhost:11412 at 02:17:01.538 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%starting worker pid=54712 on localhost:11412 at 02:17:03.960 starting worker pid=42964 on localhost:11412 at 02:17:03.968 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%[ FAIL 9 | WARN 14 | SKIP 58 | PASS 1002 ] ══ Skipped tests (58) ══════════════════════════════════════════════════════════ • On CRAN (56): 'test_DAG.network_S3.r:4:1', 'test_DAG.network_S3.r:10:1', 'test_DAG.network_S3.r:18:1', 'test_DAG.network_S3.r:24:1', 'test_DAG.network_S3.r:32:1', 'test_DAG.network_S3.r:44:1', 'test_DAG.network_S3.r:50:1', 'test_DAG.network_S3.r:58:1', 'test_DAG.network_S3.r:64:1', 'test_DAG.network_S3.r:72:1', 'test_DAG.node_S3.r:4:1', 'test_DAG.node_S3.r:9:1', 'test_DAG.node_S3.r:14:1', 'test_DAG.node_S3.r:19:1', 'test_DAG.node_S3.r:24:1', 'test_DAG.node_S3.r:32:1', 'test_DAG.node_S3.r:37:1', 'test_DAG.node_S3.r:42:1', 'test_DAG.node_S3.r:47:1', 'test_DAG.node_S3.r:52:1', 'test_dag.r:14:1', 'test_dag.r:21:1', 'test_dag.r:34:1', 'test_dag.r:44:1', 'test_dag.r:51:1', 'test_dag.r:64:1', 'test_node.r:548:1', 'test_node_rsurv.r:99:3', 'test_plot.DAG.r:11:1', 'test_plot.DAG.r:15:1', 'test_plot.DAG.r:19:1', 'test_plot.DAG.r:23:1', 'test_plot.DAG.r:27:1', 'test_plot.DAG.r:31:1', 'test_plot.DAG.r:35:1', 'test_plot.DAG.r:40:1', 'test_plot.DAG.r:44:1', 'test_plot.DAG.r:52:1', 'test_plot.DAG.r:59:1', 'test_plot.DAG.r:64:1', 'test_plot.DAG.r:69:1', 'test_plot.DAG.r:100:1', 'test_plot.DAG.r:104:1', 'test_plot.DAG.r:108:1', 'test_plot.simDT.r:24:1', 'test_plot.simDT.r:28:1', 'test_plot.simDT.r:32:1', 'test_plot.simDT.r:36:1', 'test_plot.simDT.r:40:1', 'test_plot.simDT.r:48:1', 'test_plot.simDT.r:56:1', 'test_simDT_S3.r:11:1', 'test_simDT_S3.r:15:1', 'test_simDT_S3.r:20:1', 'test_simDT_S3.r:25:1', 'test_sim_discrete_event.r:693:3' • Skipping (2): 'test_node_lmer.r:2:1', 'test_node_zeroinfl.r:101:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_network.r:108:3'): sorting with net() terms ──────────────────── Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/Rfast/libs/x64/Rfast.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. ├─simDAG::sim_from_dag(dag, n_sim = 10, sort_dag = TRUE) at test_network.r:108:3 2. └─base::loadNamespace(x) 3. └─base::library.dynam(lib, package, package.lib) 4. └─base::dyn.load(file, DLLpath = DLLpath, ...) 5. └─base (local) inDL(x, as.logical(local), as.logical(now), ...) ── Error ('test_node_rsurv.r:11:3'): general test case aftreg ────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:11:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:24:3'): general test case ahreg ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:24:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:37:3'): general test case ehreg ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:37:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:50:3'): general test case ypreg ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:50:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:63:3'): general test case poreg ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:63:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:76:3'): just as one column ──────────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:76:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:90:3'): with censoring ──────────────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:90:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_sim_from_dag.r:166:5'): sort_dag working ─────────────────────── Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.6/Rfast/libs/x64/Rfast.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. ├─simDAG::sim_from_dag(n_sim = 20, dag = dag, sort_dag = TRUE) at test_sim_from_dag.r:166:5 2. └─base::loadNamespace(x) 3. └─base::library.dynam(lib, package, package.lib) 4. └─base::dyn.load(file, DLLpath = DLLpath, ...) 5. └─base (local) inDL(x, as.logical(local), as.logical(now), ...) [ FAIL 9 | WARN 14 | SKIP 58 | PASS 1002 ] Error: ! Test failures. Execution halted Flavor: r-release-windows-x86_64

Version: 1.0.1
Check: tests
Result: ERROR Running 'testthat.R' [127s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(simDAG) > library(testthat) > library(data.table) > library(igraph) Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > library(ggdag) Attaching package: 'ggdag' The following object is masked from 'package:stats': filter > > data.table::setDTthreads(1) > > test_check("simDAG") Saving _problems/test_network-108.R Saving _problems/test_node_rsurv-11.R Saving _problems/test_node_rsurv-24.R Saving _problems/test_node_rsurv-37.R Saving _problems/test_node_rsurv-50.R Saving _problems/test_node_rsurv-63.R Saving _problems/test_node_rsurv-76.R Saving _problems/test_node_rsurv-90.R t = 1 node = sickness2 t = 1 node = sickness1 t = 2 node = sickness2 t = 2 node = sickness1 t = 3 node = sickness2 t = 3 node = sickness1 t = 4 node = sickness2 t = 4 node = sickness1 t = 5 node = sickness2 t = 5 node = sickness1 Saving _problems/test_sim_from_dag-166.R starting worker pid=35004 on localhost:11395 at 13:22:02.769 starting worker pid=31224 on localhost:11395 at 13:22:02.769 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: simDAG Loading required package: rngtools loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=57568 on localhost:11395 at 13:22:05.507 starting worker pid=53308 on localhost:11395 at 13:22:05.581 Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=29000 on localhost:11395 at 13:22:09.303 starting worker pid=87888 on localhost:11395 at 13:22:09.308 Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=111696 on localhost:11395 at 13:22:13.166 starting worker pid=39272 on localhost:11395 at 13:22:13.194 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100%starting worker pid=53188 on localhost:11395 at 13:22:16.642 starting worker pid=80732 on localhost:11395 at 13:22:16.644 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%starting worker pid=98008 on localhost:11395 at 13:22:19.326 starting worker pid=112220 on localhost:11395 at 13:22:19.362 | | | 0%Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: simDAG loaded simDAG and set parent environment Loading required package: foreach Loading required package: rngtools | |=================================== | 50% | |======================================================================| 100%[ FAIL 9 | WARN 14 | SKIP 58 | PASS 1002 ] ══ Skipped tests (58) ══════════════════════════════════════════════════════════ • On CRAN (56): 'test_DAG.network_S3.r:4:1', 'test_DAG.network_S3.r:10:1', 'test_DAG.network_S3.r:18:1', 'test_DAG.network_S3.r:24:1', 'test_DAG.network_S3.r:32:1', 'test_DAG.network_S3.r:44:1', 'test_DAG.network_S3.r:50:1', 'test_DAG.network_S3.r:58:1', 'test_DAG.network_S3.r:64:1', 'test_DAG.network_S3.r:72:1', 'test_DAG.node_S3.r:4:1', 'test_DAG.node_S3.r:9:1', 'test_DAG.node_S3.r:14:1', 'test_DAG.node_S3.r:19:1', 'test_DAG.node_S3.r:24:1', 'test_DAG.node_S3.r:32:1', 'test_DAG.node_S3.r:37:1', 'test_DAG.node_S3.r:42:1', 'test_DAG.node_S3.r:47:1', 'test_DAG.node_S3.r:52:1', 'test_dag.r:14:1', 'test_dag.r:21:1', 'test_dag.r:34:1', 'test_dag.r:44:1', 'test_dag.r:51:1', 'test_dag.r:64:1', 'test_node.r:548:1', 'test_node_rsurv.r:99:3', 'test_plot.DAG.r:11:1', 'test_plot.DAG.r:15:1', 'test_plot.DAG.r:19:1', 'test_plot.DAG.r:23:1', 'test_plot.DAG.r:27:1', 'test_plot.DAG.r:31:1', 'test_plot.DAG.r:35:1', 'test_plot.DAG.r:40:1', 'test_plot.DAG.r:44:1', 'test_plot.DAG.r:52:1', 'test_plot.DAG.r:59:1', 'test_plot.DAG.r:64:1', 'test_plot.DAG.r:69:1', 'test_plot.DAG.r:100:1', 'test_plot.DAG.r:104:1', 'test_plot.DAG.r:108:1', 'test_plot.simDT.r:24:1', 'test_plot.simDT.r:28:1', 'test_plot.simDT.r:32:1', 'test_plot.simDT.r:36:1', 'test_plot.simDT.r:40:1', 'test_plot.simDT.r:48:1', 'test_plot.simDT.r:56:1', 'test_simDT_S3.r:11:1', 'test_simDT_S3.r:15:1', 'test_simDT_S3.r:20:1', 'test_simDT_S3.r:25:1', 'test_sim_discrete_event.r:693:3' • Skipping (2): 'test_node_lmer.r:2:1', 'test_node_zeroinfl.r:101:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_network.r:108:3'): sorting with net() terms ──────────────────── Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/Rfast/libs/x64/Rfast.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. ├─simDAG::sim_from_dag(dag, n_sim = 10, sort_dag = TRUE) at test_network.r:108:3 2. └─base::loadNamespace(x) 3. └─base::library.dynam(lib, package, package.lib) 4. └─base::dyn.load(file, DLLpath = DLLpath, ...) 5. └─base (local) inDL(x, as.logical(local), as.logical(now), ...) ── Error ('test_node_rsurv.r:11:3'): general test case aftreg ────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:11:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:24:3'): general test case ahreg ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:24:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:37:3'): general test case ehreg ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:37:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:50:3'): general test case ypreg ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:50:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:63:3'): general test case poreg ─────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:63:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:76:3'): just as one column ──────────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:76:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_node_rsurv.r:90:3'): with censoring ──────────────────────────── Error: An error occured when processing node 'Y'. The message was: Error in inDL(x, as.logical(local), as.logical(now), ...): unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/rstan/libs/x64/rstan.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 100) at test_node_rsurv.r:90:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test_sim_from_dag.r:166:5'): sort_dag working ─────────────────────── Error in `inDL(x, as.logical(local), as.logical(now), ...)`: unable to load shared object 'D:/RCompile/CRANpkg/lib/4.5/Rfast/libs/x64/Rfast.dll': LoadLibrary failure: Die angegebene Prozedur wurde nicht gefunden. Backtrace: ▆ 1. ├─simDAG::sim_from_dag(n_sim = 20, dag = dag, sort_dag = TRUE) at test_sim_from_dag.r:166:5 2. └─base::loadNamespace(x) 3. └─base::library.dynam(lib, package, package.lib) 4. └─base::dyn.load(file, DLLpath = DLLpath, ...) 5. └─base (local) inDL(x, as.logical(local), as.logical(now), ...) [ FAIL 9 | WARN 14 | SKIP 58 | PASS 1002 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64