CRAN Package Check Results for Package pagoda2

Last updated on 2026-08-01 05:55:57 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.15 142.74 134.37 277.11 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.15 87.74 93.58 181.32 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.15 195.00 203.90 398.90 OK
r-devel-linux-x86_64-fedora-gcc 1.0.15 97.00 85.32 182.32 OK
r-devel-windows-x86_64 1.0.15 157.00 150.00 307.00 OK
r-patched-linux-x86_64 1.0.15 130.41 125.40 255.81 OK
r-release-linux-x86_64 1.0.15 124.74 126.06 250.80 OK
r-release-macos-arm64 1.0.15 25.00 21.00 46.00 OK
r-release-macos-x86_64 1.0.15 71.00 145.00 216.00 OK
r-release-windows-x86_64 1.0.15 159.00 160.00 319.00 OK
r-oldrel-macos-arm64 1.0.15 22.00 25.00 47.00 OK
r-oldrel-macos-x86_64 1.0.15 74.00 91.00 165.00 OK
r-oldrel-windows-x86_64 1.0.15 177.00 200.00 377.00 OK

Check Details

Version: 1.0.15
Check: Rd contents
Result: NOTE Rd files without \usage: ‘pagoda2WebApp_arrayToJSON.Rd’ ‘pagoda2WebApp_call.Rd’ ‘pagoda2WebApp_generateDendrogramOfGroups.Rd’ ‘pagoda2WebApp_generateGeneKnnJSON.Rd’ ‘pagoda2WebApp_getCompressedEmbedding.Rd’ ‘pagoda2WebApp_packCompressFloat64Array.Rd’ ‘pagoda2WebApp_packCompressInt32Array.Rd’ ‘pagoda2WebApp_readStaticFile.Rd’ ‘pagoda2WebApp_serializeToStaticFast.Rd’ ‘pagoda2WebApp_serverLog.Rd’ ‘pagoda2WebApp_sparseMatList.Rd’ \arguments should not be documented without \usage. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.15
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp05rNkF’ ‘~/tmp/scratch/Rtmp2PQeKi’ ‘~/tmp/scratch/Rtmp2dFREV’ ‘~/tmp/scratch/Rtmp33lPfh’ ‘~/tmp/scratch/Rtmp3dzfZd’ ‘~/tmp/scratch/Rtmp49GgGr’ ‘~/tmp/scratch/Rtmp4SX9ij’ ‘~/tmp/scratch/Rtmp4XKtSh’ ‘~/tmp/scratch/Rtmp4ccqbi’ ‘~/tmp/scratch/Rtmp54elHQ’ ‘~/tmp/scratch/Rtmp5ReeOV’ ‘~/tmp/scratch/Rtmp5eFYFR’ ‘~/tmp/scratch/Rtmp6hbKIU’ ‘~/tmp/scratch/Rtmp6kqTP7’ ‘~/tmp/scratch/Rtmp6xbLZQ’ ‘~/tmp/scratch/Rtmp74fZ0u’ ‘~/tmp/scratch/Rtmp7NaZH3’ ‘~/tmp/scratch/Rtmp7au4Fl’ ‘~/tmp/scratch/Rtmp7fOC9Q’ ‘~/tmp/scratch/Rtmp7zqdzn’ ‘~/tmp/scratch/Rtmp8BidKt’ ‘~/tmp/scratch/Rtmp8go6FC’ ‘~/tmp/scratch/Rtmp950q4R’ ‘~/tmp/scratch/RtmpAVEisX’ ‘~/tmp/scratch/RtmpAXfyWi’ ‘~/tmp/scratch/RtmpBaK70j’ ‘~/tmp/scratch/RtmpCyko70’ ‘~/tmp/scratch/RtmpDXyv0X’ ‘~/tmp/scratch/RtmpDoN0FD’ ‘~/tmp/scratch/RtmpDpYWDv’ ‘~/tmp/scratch/RtmpEB0ASr’ ‘~/tmp/scratch/RtmpEak6Bm’ ‘~/tmp/scratch/RtmpFCpGNs’ ‘~/tmp/scratch/RtmpFLUvaF’ ‘~/tmp/scratch/RtmpFNnR3y’ ‘~/tmp/scratch/RtmpFOpWxL’ ‘~/tmp/scratch/RtmpFXwwpv’ ‘~/tmp/scratch/RtmpFzCA9d’ ‘~/tmp/scratch/RtmpG0wn9C’ ‘~/tmp/scratch/RtmpGUYZJK’ ‘~/tmp/scratch/RtmpHWuSGs’ ‘~/tmp/scratch/RtmpHhUBHE’ ‘~/tmp/scratch/RtmpIOrlRA’ ‘~/tmp/scratch/RtmpIyeonO’ ‘~/tmp/scratch/RtmpJcbAqa’ ‘~/tmp/scratch/RtmpJjQTMW’ ‘~/tmp/scratch/RtmpKE2LG2’ ‘~/tmp/scratch/RtmpKKgPco’ ‘~/tmp/scratch/RtmpL7zaiz’ ‘~/tmp/scratch/RtmpLOyxdJ’ ‘~/tmp/scratch/RtmpLce4Of’ ‘~/tmp/scratch/RtmpMgrN03’ ‘~/tmp/scratch/RtmpMmYvUS’ ‘~/tmp/scratch/RtmpNRKQ8D’ ‘~/tmp/scratch/RtmpNcWtr0’ ‘~/tmp/scratch/RtmpNxcYeD’ ‘~/tmp/scratch/RtmpOlzo5r’ ‘~/tmp/scratch/RtmpOmxlcE’ ‘~/tmp/scratch/RtmpP0TEQs’ ‘~/tmp/scratch/RtmpPKU4RO’ ‘~/tmp/scratch/RtmpPy9uuv’ ‘~/tmp/scratch/RtmpQefbHG’ ‘~/tmp/scratch/RtmpQuwGxG’ ‘~/tmp/scratch/RtmpRMGLm9’ ‘~/tmp/scratch/RtmpRTlH5I’ ‘~/tmp/scratch/RtmpReQdaL’ ‘~/tmp/scratch/RtmpRqacBD’ ‘~/tmp/scratch/RtmpS0klaK’ ‘~/tmp/scratch/RtmpS6WP7w’ ‘~/tmp/scratch/RtmpSDKm5n’ ‘~/tmp/scratch/RtmpSE1rP7’ ‘~/tmp/scratch/RtmpStFTy5’ ‘~/tmp/scratch/RtmpTBugqk’ ‘~/tmp/scratch/RtmpTCPtyt’ ‘~/tmp/scratch/RtmpTCWdj7’ ‘~/tmp/scratch/RtmpTF2wrQ’ ‘~/tmp/scratch/RtmpUXryff’ ‘~/tmp/scratch/RtmpV1X4nv’ ‘~/tmp/scratch/RtmpVlg7db’ ‘~/tmp/scratch/RtmpVpIdM4’ ‘~/tmp/scratch/RtmpX67Aag’ ‘~/tmp/scratch/RtmpXuJbJa’ ‘~/tmp/scratch/RtmpYMWZd1’ ‘~/tmp/scratch/RtmpZ4fS2n’ ‘~/tmp/scratch/RtmpZNGB6C’ ‘~/tmp/scratch/Rtmpa0ymGi’ ‘~/tmp/scratch/RtmpaBpzRx’ ‘~/tmp/scratch/Rtmpb0Og79’ ‘~/tmp/scratch/Rtmpbegfav’ ‘~/tmp/scratch/RtmpbhX7SJ’ ‘~/tmp/scratch/RtmpbqkxP9’ ‘~/tmp/scratch/Rtmpc6LJF9’ ‘~/tmp/scratch/Rtmpc9PMlQ’ ‘~/tmp/scratch/RtmpcomjCW’ ‘~/tmp/scratch/Rtmpd168RD’ ‘~/tmp/scratch/RtmpdRptpP’ ‘~/tmp/scratch/Rtmpe869Ds’ ‘~/tmp/scratch/RtmpevPeFb’ ‘~/tmp/scratch/Rtmpey3E4l’ ‘~/tmp/scratch/Rtmpf59ndO’ ‘~/tmp/scratch/Rtmpg8yaj5’ ‘~/tmp/scratch/RtmpgCGL7P’ ‘~/tmp/scratch/RtmpgGI7Su’ ‘~/tmp/scratch/RtmphG6uOz’ ‘~/tmp/scratch/RtmphNc9fY’ ‘~/tmp/scratch/RtmphQcNQ2’ ‘~/tmp/scratch/RtmphVqazX’ ‘~/tmp/scratch/RtmpibVxMV’ ‘~/tmp/scratch/Rtmpic9P5U’ ‘~/tmp/scratch/RtmpiwS4Yh’ ‘~/tmp/scratch/RtmpjNzbeh’ ‘~/tmp/scratch/RtmpjjLpWp’ ‘~/tmp/scratch/RtmpjwVhS4’ ‘~/tmp/scratch/RtmpkCh3Xd’ ‘~/tmp/scratch/RtmpkwQWAl’ ‘~/tmp/scratch/RtmplUOltX’ ‘~/tmp/scratch/RtmpmLBstq’ ‘~/tmp/scratch/RtmpmLVdOg’ ‘~/tmp/scratch/RtmpmYKEsV’ ‘~/tmp/scratch/RtmpnEY11I’ ‘~/tmp/scratch/Rtmpntf072’ ‘~/tmp/scratch/RtmpoMLRX6’ ‘~/tmp/scratch/RtmpoNh3Rh’ ‘~/tmp/scratch/RtmpoWLgXc’ ‘~/tmp/scratch/RtmppFdXKP’ ‘~/tmp/scratch/RtmppPvKUn’ ‘~/tmp/scratch/RtmppcwnGU’ ‘~/tmp/scratch/RtmppyucAP’ ‘~/tmp/scratch/RtmpqHzKA6’ ‘~/tmp/scratch/RtmpqNJUXa’ ‘~/tmp/scratch/RtmprWG4qY’ ‘~/tmp/scratch/RtmproWrvU’ ‘~/tmp/scratch/Rtmprsz82P’ ‘~/tmp/scratch/RtmpsD4hAp’ ‘~/tmp/scratch/RtmpsEgRw4’ ‘~/tmp/scratch/RtmpsZKVJE’ ‘~/tmp/scratch/RtmptTVONB’ ‘~/tmp/scratch/RtmptXEEzh’ ‘~/tmp/scratch/Rtmptf97E0’ ‘~/tmp/scratch/RtmpttxSpT’ ‘~/tmp/scratch/Rtmpu05Fdv’ ‘~/tmp/scratch/Rtmpucmam5’ ‘~/tmp/scratch/RtmpvARR7Y’ ‘~/tmp/scratch/RtmpvBMkCY’ ‘~/tmp/scratch/RtmpwL3Kq1’ ‘~/tmp/scratch/Rtmpwxuhx5’ ‘~/tmp/scratch/Rtmpxd187F’ ‘~/tmp/scratch/Rtmpxj7gRW’ ‘~/tmp/scratch/RtmpzlQKOj’ ‘~/tmp/scratch/Rtmpznnxqt’ ‘~/tmp/scratch/xvfb-run.1cHxnu’ ‘~/tmp/scratch/xvfb-run.1haTE9’ ‘~/tmp/scratch/xvfb-run.3LhJmy’ ‘~/tmp/scratch/xvfb-run.3Psay4’ ‘~/tmp/scratch/xvfb-run.4Jtb41’ ‘~/tmp/scratch/xvfb-run.5O4HtH’ ‘~/tmp/scratch/xvfb-run.5p2Lci’ ‘~/tmp/scratch/xvfb-run.62QYqI’ ‘~/tmp/scratch/xvfb-run.6JoSeR’ ‘~/tmp/scratch/xvfb-run.9494Zb’ ‘~/tmp/scratch/xvfb-run.9WE9nl’ ‘~/tmp/scratch/xvfb-run.AaPEnA’ ‘~/tmp/scratch/xvfb-run.Ak8fqt’ ‘~/tmp/scratch/xvfb-run.BbD1F0’ ‘~/tmp/scratch/xvfb-run.CAfYvQ’ ‘~/tmp/scratch/xvfb-run.CuzzZX’ ‘~/tmp/scratch/xvfb-run.DD0hGL’ ‘~/tmp/scratch/xvfb-run.DMERGm’ ‘~/tmp/scratch/xvfb-run.E3M7FY’ ‘~/tmp/scratch/xvfb-run.ETL9OA’ ‘~/tmp/scratch/xvfb-run.FwzCgS’ ‘~/tmp/scratch/xvfb-run.H0RTrE’ ‘~/tmp/scratch/xvfb-run.HhhrEF’ ‘~/tmp/scratch/xvfb-run.JVgFu7’ ‘~/tmp/scratch/xvfb-run.KLn083’ ‘~/tmp/scratch/xvfb-run.LvtjgI’ ‘~/tmp/scratch/xvfb-run.O3Zewc’ ‘~/tmp/scratch/xvfb-run.ONDhuI’ ‘~/tmp/scratch/xvfb-run.OPGrl4’ ‘~/tmp/scratch/xvfb-run.QUgZBL’ ‘~/tmp/scratch/xvfb-run.RJRIFY’ ‘~/tmp/scratch/xvfb-run.RS3PYH’ ‘~/tmp/scratch/xvfb-run.Uj5j4Y’ ‘~/tmp/scratch/xvfb-run.Vligrn’ ‘~/tmp/scratch/xvfb-run.VvWeuq’ ‘~/tmp/scratch/xvfb-run.YeeBpM’ ‘~/tmp/scratch/xvfb-run.Z9UDBU’ ‘~/tmp/scratch/xvfb-run.Zmands’ ‘~/tmp/scratch/xvfb-run.aQDUHo’ ‘~/tmp/scratch/xvfb-run.bZV0VN’ ‘~/tmp/scratch/xvfb-run.bpFnYR’ ‘~/tmp/scratch/xvfb-run.cu0Yu9’ ‘~/tmp/scratch/xvfb-run.f9VUYh’ ‘~/tmp/scratch/xvfb-run.gDTggk’ ‘~/tmp/scratch/xvfb-run.hFnumE’ ‘~/tmp/scratch/xvfb-run.hGkCVQ’ ‘~/tmp/scratch/xvfb-run.hkaIXj’ ‘~/tmp/scratch/xvfb-run.iCJAVY’ ‘~/tmp/scratch/xvfb-run.jXkyX9’ ‘~/tmp/scratch/xvfb-run.jjCnQI’ ‘~/tmp/scratch/xvfb-run.mz3Dac’ ‘~/tmp/scratch/xvfb-run.oYBNVg’ ‘~/tmp/scratch/xvfb-run.p6JSYq’ ‘~/tmp/scratch/xvfb-run.pEXn1X’ ‘~/tmp/scratch/xvfb-run.pVdlMi’ ‘~/tmp/scratch/xvfb-run.tOnxG5’ ‘~/tmp/scratch/xvfb-run.tSUmd8’ ‘~/tmp/scratch/xvfb-run.tlLG1M’ ‘~/tmp/scratch/xvfb-run.ttFGOy’ ‘~/tmp/scratch/xvfb-run.vTFSjs’ ‘~/tmp/scratch/xvfb-run.vxVWaP’ ‘~/tmp/scratch/xvfb-run.vyeHr1’ ‘~/tmp/scratch/xvfb-run.wGQKM3’ ‘~/tmp/scratch/xvfb-run.xBsDeJ’ ‘~/tmp/scratch/xvfb-run.xjlDGy’ ‘/dev/shm/sm_segment.gimli1.1001.93d50000.0’ ‘~/.cache/pocl/uncached/tempfile_rfZkew’ Flavor: r-devel-linux-x86_64-debian-gcc