Last updated on 2026-10-07 05:49:36 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.13.0 | 102.91 | 621.52 | 724.43 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.13.0 | NOTE | ||||
| r-devel-linux-x86_64-fedora-clang | 0.13.0 | 86.00 | 454.80 | 540.80 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.19.1 | 109.00 | 327.25 | 436.25 | OK | |
| r-devel-windows-x86_64 | 0.13.0 | 126.00 | 748.00 | 874.00 | OK | |
| r-patched-linux-x86_64 | 0.13.0 | 108.51 | 576.76 | 685.27 | OK | |
| r-release-linux-x86_64 | 0.13.0 | OK | ||||
| r-release-macos-arm64 | 0.13.0 | 21.00 | 123.00 | 144.00 | OK | |
| r-release-macos-x86_64 | 0.19.1 | 89.00 | 431.00 | 520.00 | ERROR | |
| r-release-windows-x86_64 | 0.13.0 | 122.00 | 604.00 | 726.00 | OK | |
| r-oldrel-macos-arm64 | 0.13.0 | 20.00 | 128.00 | 148.00 | OK | |
| r-oldrel-macos-x86_64 | 0.19.1 | 86.00 | 450.00 | 536.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.13.0 | 157.00 | 820.00 | 977.00 | OK |
Version: 0.13.0
Check: Rd contents
Result: NOTE
Rd files without \usage:
‘as-ClusteredNeuroVol-DenseNeuroVol.Rd’ ‘as.raster.Rd’ ‘image.Rd’
\arguments should not be documented without \usage.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.19.1
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [74s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(neuroim2)
Loading required package: Matrix
>
> test_check("neuroim2")
Saving _problems/test-io-conformance-420.R
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 7690 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-cgb.R:2:3', 'test-cgb.R:45:3', 'test-cgb.R:93:3',
'test-cgb.R:118:3', 'test-cgb.R:143:3', 'test-clusteredneurovol.R:5:3',
'test-clusteredneurovol.R:35:3', 'test-clusteredneurovol.R:50:3',
'test-clusteredneurovol.R:67:3', 'test-clusteredneurovol.R:87:3',
'test-clusteredneurovol.R:103:3', 'test-clusteredneurovol.R:117:3',
'test-downsample.R:5:3', 'test-downsample.R:23:3', 'test-downsample.R:63:3',
'test-downsample.R:79:3', 'test-downsample.R:106:3',
'test-downsample.R:228:3', 'test-downsample.R:245:3',
'test-downsample.R:284:3', 'test-downsample.R:299:3',
'test-downsample.R:326:3', 'test-enhance-stat-map.R:118:3',
'test-filebacked.R:44:3', 'test-filebacked.R:50:3', 'test-filebacked.R:86:3',
'test-filebacked.R:117:3', 'test-imageproc.R:5:3', 'test-imageproc.R:19:3',
'test-neurovec.R:121:3', 'test-nifti-extensions.R:146:3',
'test-nifti-roundtrip.R:110:3', 'test-nifti-roundtrip.R:124:3',
'test-oblique-regression.R:6:3', 'test-oblique-regression.R:22:3',
'test-oblique-regression.R:35:3', 'test-oblique-regression.R:45:3',
'test-oblique-regression.R:60:3', 'test-performance-guardrails.R:40:3',
'test-performance-guardrails.R:72:3', 'test-plot-engine.R:3:1',
'test-plot-overlay-colorbar-title.R:3:1', 'test-plot-registration-qc.R:3:1',
'test-plot-stat-fixes.R:3:1', 'test-plot-structure.R:3:1',
'test-resample-to.R:2:3', 'test-resample.R:8:3', 'test-resample.R:22:3',
'test-roi-series-fastpaths.R:390:3', 'test-searchlight-coverage.R:22:3',
'test-searchlight-coverage.R:30:3', 'test-searchlight-coverage.R:56:3',
'test-searchlight-coverage.R:74:3', 'test-searchlight-coverage.R:162:3',
'test-searchlight-coverage.R:170:3', 'test-searchlight-coverage.R:177:3',
'test-searchlight-parallel.R:12:3', 'test-searchlight-parallel.R:25:3',
'test-searchlight.R:20:3', 'test-searchlight.R:40:3', 'test-simulate.R:18:3',
'test-simulate.R:52:3', 'test-spatfilter.R:6:3', 'test-spatfilter.R:21:3',
'test-spatfilter.R:38:3', 'test-spatfilter.R:52:3', 'test-spatfilter.R:73:3',
'test-spatfilter.R:99:3', 'test-spatfilter.R:127:3',
'test-spatfilter.R:139:3', 'test-vignette-examples.R:12:1',
'test-vignette-neuro-vectors.R:4:3', 'test-vignette-pipelines.R:6:3',
'test-vignette-pipelines.R:27:3', 'test-vignette-pipelines.R:52:3',
'test-vignette-roi.R:6:3'
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-io-conformance.R:420:3'): a file that is not an image is rejected with the reason ──
`read_header(f)` threw an error with unexpected message.
Expected match: "does\\s+not\\s+start with a NIfTI"
Actual message: "'/Volumes/Temp/tmp/Rtmptyr939/file36f52adccd30.nii' does not start with\na NIfTI or ANALYZE header.\n✖ The leading sizeof_hdr field is 0; it must be 348 (NIfTI-1/ANALYZE) or 540\n (NIfTI-2), in either byte order.\nℹ The file may be compressed with something other than gzip, be truncated, or\n not be an image at all."
Backtrace:
▆
1. ├─testthat::expect_error(read_header(f), "does\\s+not\\s+start with a NIfTI") at test-io-conformance.R:420:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─neuroim2::read_header(f)
7. ├─neuroim2::read_meta_info(desc, file_name)
8. └─neuroim2::read_meta_info(desc, file_name)
9. └─neuroim2:::.read_meta_info(x, file_name, read_nifti_header, NIFTIMetaInfo)
10. └─neuroim2 (local) read_func(hfile)
11. └─neuroim2:::.nifti_endian_and_version(conn, fname)
12. └─cli::cli_abort(...)
13. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 7690 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.19.1
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [71s/102s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(neuroim2)
Loading required package: Matrix
>
> test_check("neuroim2")
Saving _problems/test-io-conformance-420.R
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 7690 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-cgb.R:2:3', 'test-cgb.R:45:3', 'test-cgb.R:93:3',
'test-cgb.R:118:3', 'test-cgb.R:143:3', 'test-clusteredneurovol.R:5:3',
'test-clusteredneurovol.R:35:3', 'test-clusteredneurovol.R:50:3',
'test-clusteredneurovol.R:67:3', 'test-clusteredneurovol.R:87:3',
'test-clusteredneurovol.R:103:3', 'test-clusteredneurovol.R:117:3',
'test-downsample.R:5:3', 'test-downsample.R:23:3', 'test-downsample.R:63:3',
'test-downsample.R:79:3', 'test-downsample.R:106:3',
'test-downsample.R:228:3', 'test-downsample.R:245:3',
'test-downsample.R:284:3', 'test-downsample.R:299:3',
'test-downsample.R:326:3', 'test-enhance-stat-map.R:118:3',
'test-filebacked.R:44:3', 'test-filebacked.R:50:3', 'test-filebacked.R:86:3',
'test-filebacked.R:117:3', 'test-imageproc.R:5:3', 'test-imageproc.R:19:3',
'test-neurovec.R:121:3', 'test-nifti-extensions.R:146:3',
'test-nifti-roundtrip.R:110:3', 'test-nifti-roundtrip.R:124:3',
'test-oblique-regression.R:6:3', 'test-oblique-regression.R:22:3',
'test-oblique-regression.R:35:3', 'test-oblique-regression.R:45:3',
'test-oblique-regression.R:60:3', 'test-performance-guardrails.R:40:3',
'test-performance-guardrails.R:72:3', 'test-plot-engine.R:3:1',
'test-plot-overlay-colorbar-title.R:3:1', 'test-plot-registration-qc.R:3:1',
'test-plot-stat-fixes.R:3:1', 'test-plot-structure.R:3:1',
'test-resample-to.R:2:3', 'test-resample.R:8:3', 'test-resample.R:22:3',
'test-roi-series-fastpaths.R:390:3', 'test-searchlight-coverage.R:22:3',
'test-searchlight-coverage.R:30:3', 'test-searchlight-coverage.R:56:3',
'test-searchlight-coverage.R:74:3', 'test-searchlight-coverage.R:162:3',
'test-searchlight-coverage.R:170:3', 'test-searchlight-coverage.R:177:3',
'test-searchlight-parallel.R:12:3', 'test-searchlight-parallel.R:25:3',
'test-searchlight.R:20:3', 'test-searchlight.R:40:3', 'test-simulate.R:18:3',
'test-simulate.R:52:3', 'test-spatfilter.R:6:3', 'test-spatfilter.R:21:3',
'test-spatfilter.R:38:3', 'test-spatfilter.R:52:3', 'test-spatfilter.R:73:3',
'test-spatfilter.R:99:3', 'test-spatfilter.R:127:3',
'test-spatfilter.R:139:3', 'test-vignette-examples.R:12:1',
'test-vignette-neuro-vectors.R:4:3', 'test-vignette-pipelines.R:6:3',
'test-vignette-pipelines.R:27:3', 'test-vignette-pipelines.R:52:3',
'test-vignette-roi.R:6:3'
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-io-conformance.R:420:3'): a file that is not an image is rejected with the reason ──
`read_header(f)` threw an error with unexpected message.
Expected match: "does\\s+not\\s+start with a NIfTI"
Actual message: "'/Volumes/Temp/tmp/RtmpJVqepU/filed9b847001381.nii' does not start with\na NIfTI or ANALYZE header.\n✖ The leading sizeof_hdr field is 0; it must be 348 (NIfTI-1/ANALYZE) or 540\n (NIfTI-2), in either byte order.\nℹ The file may be compressed with something other than gzip, be truncated, or\n not be an image at all."
Backtrace:
▆
1. ├─testthat::expect_error(read_header(f), "does\\s+not\\s+start with a NIfTI") at test-io-conformance.R:420:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─neuroim2::read_header(f)
7. ├─neuroim2::read_meta_info(desc, file_name)
8. └─neuroim2::read_meta_info(desc, file_name)
9. └─neuroim2:::.read_meta_info(x, file_name, read_nifti_header, NIFTIMetaInfo)
10. └─neuroim2 (local) read_func(hfile)
11. └─neuroim2:::.nifti_endian_and_version(conn, fname)
12. └─cli::cli_abort(...)
13. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 7690 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64