Last updated on 2026-08-01 05:55:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.9 | 34.35 | 204.62 | 238.97 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.3.9 | 25.25 | 138.57 | 163.82 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.3.9 | 57.00 | 314.68 | 371.68 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.9 | 26.00 | 133.38 | 159.38 | NOTE | |
| r-devel-windows-x86_64 | 0.3.9 | 44.00 | 223.00 | 267.00 | NOTE | |
| r-patched-linux-x86_64 | 0.3.9 | 38.53 | 188.75 | 227.28 | OK | |
| r-release-linux-x86_64 | 0.3.9 | 35.27 | 190.34 | 225.61 | OK | |
| r-release-macos-arm64 | 0.3.9 | 8.00 | 47.00 | 55.00 | OK | |
| r-release-macos-x86_64 | 0.3.9 | 23.00 | 200.00 | 223.00 | OK | |
| r-release-windows-x86_64 | 0.3.9 | 41.00 | 258.00 | 299.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.9 | 7.00 | 47.00 | 54.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.9 | 26.00 | 218.00 | 244.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.9 | 59.00 | 319.00 | 378.00 | OK |
Version: 0.3.9
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
metacoder/tests/testthat/test--taxmap_parsers.R (.Names: 1)
'.Names' should be changed to 'names'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.3.9
Check: Rd contents
Result: NOTE
Rd files without \usage:
‘all_names.Rd’ ‘arrange_obs.Rd’ ‘arrange_taxa.Rd’ ‘branches.Rd’
‘classifications.Rd’ ‘filter_obs.Rd’ ‘filter_taxa.Rd’ ‘get_data.Rd’
‘get_data_frame.Rd’ ‘get_dataset.Rd’ ‘id_classifications.Rd’
‘internodes.Rd’ ‘is_branch.Rd’ ‘is_internode.Rd’ ‘is_leaf.Rd’
‘is_root.Rd’ ‘is_stem.Rd’ ‘leaves.Rd’ ‘leaves_apply.Rd’ ‘map_data.Rd’
‘map_data_.Rd’ ‘mutate_obs.Rd’ ‘n_leaves.Rd’ ‘n_leaves_1.Rd’
‘n_obs.Rd’ ‘n_obs_1.Rd’ ‘n_subtaxa.Rd’ ‘n_subtaxa_1.Rd’
‘n_supertaxa.Rd’ ‘n_supertaxa_1.Rd’ ‘obs.Rd’ ‘obs_apply.Rd’
‘print_tree.Rd’ ‘remove_redundant_names.Rd’ ‘replace_taxon_ids.Rd’
‘roots.Rd’ ‘sample_frac_obs.Rd’ ‘sample_frac_taxa.Rd’
‘sample_n_obs.Rd’ ‘sample_n_taxa.Rd’ ‘select_obs.Rd’ ‘stems.Rd’
‘subtaxa.Rd’ ‘subtaxa_apply.Rd’ ‘supertaxa.Rd’ ‘supertaxa_apply.Rd’
‘taxon_ids.Rd’ ‘taxon_indexes.Rd’ ‘taxon_names.Rd’ ‘taxon_ranks.Rd’
‘taxonomy_table.Rd’ ‘transmute_obs.Rd’
\arguments should not be documented without \usage.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0FcC0z’ ‘~/tmp/scratch/Rtmp0Q9Hf6’
‘~/tmp/scratch/Rtmp0Twi73’ ‘~/tmp/scratch/Rtmp0kqcpN’
‘~/tmp/scratch/Rtmp0qnVN1’ ‘~/tmp/scratch/Rtmp1ArNJ7’
‘~/tmp/scratch/Rtmp210XwH’ ‘~/tmp/scratch/Rtmp2HGYB0’
‘~/tmp/scratch/Rtmp2LGAjX’ ‘~/tmp/scratch/Rtmp2ZgwXy’
‘~/tmp/scratch/Rtmp2jObJF’ ‘~/tmp/scratch/Rtmp2upvDK’
‘~/tmp/scratch/Rtmp3WeBAI’ ‘~/tmp/scratch/Rtmp3y7tVT’
‘~/tmp/scratch/Rtmp4Rc805’ ‘~/tmp/scratch/Rtmp4YDWJS’
‘~/tmp/scratch/Rtmp5D7UfA’ ‘~/tmp/scratch/Rtmp5Nap7M’
‘~/tmp/scratch/Rtmp5Pi8US’ ‘~/tmp/scratch/Rtmp5kfMoD’
‘~/tmp/scratch/Rtmp6lnm4T’ ‘~/tmp/scratch/Rtmp6qkhSv’
‘~/tmp/scratch/Rtmp7JkPOI’ ‘~/tmp/scratch/Rtmp7VhRnt’
‘~/tmp/scratch/Rtmp7mXfu1’ ‘~/tmp/scratch/Rtmp8Ju0zO’
‘~/tmp/scratch/Rtmp8Ph49H’ ‘~/tmp/scratch/Rtmp8aw9jn’
‘~/tmp/scratch/Rtmp8skYTJ’ ‘~/tmp/scratch/RtmpA3Y3vp’
‘~/tmp/scratch/RtmpA8Ozo9’ ‘~/tmp/scratch/RtmpA9bQPx’
‘~/tmp/scratch/RtmpAsvq1W’ ‘~/tmp/scratch/RtmpB90N8S’
‘~/tmp/scratch/RtmpBLOfU3’ ‘~/tmp/scratch/RtmpBk7EZv’
‘~/tmp/scratch/RtmpC18BzH’ ‘~/tmp/scratch/RtmpC3Pzer’
‘~/tmp/scratch/RtmpCDCloW’ ‘~/tmp/scratch/RtmpCuVjmi’
‘~/tmp/scratch/RtmpDEdtMD’ ‘~/tmp/scratch/RtmpDg0fim’
‘~/tmp/scratch/RtmpEh8Kxz’ ‘~/tmp/scratch/RtmpF8JM1z’
‘~/tmp/scratch/RtmpGMn9N3’ ‘~/tmp/scratch/RtmpGN8gLq’
‘~/tmp/scratch/RtmpGgcLA6’ ‘~/tmp/scratch/RtmpGlGxE0’
‘~/tmp/scratch/RtmpHgSfo8’ ‘~/tmp/scratch/RtmpHutlpA’
‘~/tmp/scratch/RtmpIH9nL5’ ‘~/tmp/scratch/RtmpIJbu36’
‘~/tmp/scratch/RtmpIQM2My’ ‘~/tmp/scratch/RtmpIyuYMR’
‘~/tmp/scratch/RtmpJNiTtV’ ‘~/tmp/scratch/RtmpJg9bBg’
‘~/tmp/scratch/RtmpJrZiJp’ ‘~/tmp/scratch/RtmpJrhbep’
‘~/tmp/scratch/RtmpKPdrh1’ ‘~/tmp/scratch/RtmpKRTL9s’
‘~/tmp/scratch/RtmpKgbHCP’ ‘~/tmp/scratch/RtmpL0WPZv’
‘~/tmp/scratch/RtmpLvE55p’ ‘~/tmp/scratch/RtmpMK2PBZ’
‘~/tmp/scratch/RtmpNN4437’ ‘~/tmp/scratch/RtmpNOmTV1’
‘~/tmp/scratch/RtmpOAgsJ1’ ‘~/tmp/scratch/RtmpPZQSWZ’
‘~/tmp/scratch/RtmpPpi2QT’ ‘~/tmp/scratch/RtmpQDQFOy’
‘~/tmp/scratch/RtmpQeVTBz’ ‘~/tmp/scratch/RtmpR20TNu’
‘~/tmp/scratch/RtmpRFsZCs’ ‘~/tmp/scratch/RtmpRHTrIm’
‘~/tmp/scratch/RtmpRdKTG2’ ‘~/tmp/scratch/RtmpRrYVjQ’
‘~/tmp/scratch/RtmpRteDfZ’ ‘~/tmp/scratch/RtmpS4TSzQ’
‘~/tmp/scratch/RtmpSSbW4b’ ‘~/tmp/scratch/RtmpT9yd8g’
‘~/tmp/scratch/RtmpTcPtWd’ ‘~/tmp/scratch/RtmpUO93bu’
‘~/tmp/scratch/RtmpUy29tw’ ‘~/tmp/scratch/RtmpV8ETwz’
‘~/tmp/scratch/RtmpVImh2A’ ‘~/tmp/scratch/RtmpVPXJBo’
‘~/tmp/scratch/RtmpVdWDAz’ ‘~/tmp/scratch/RtmpWAUli4’
‘~/tmp/scratch/RtmpWBKKvw’ ‘~/tmp/scratch/RtmpXPiwNb’
‘~/tmp/scratch/RtmpXea3fW’ ‘~/tmp/scratch/RtmpXnQvyo’
‘~/tmp/scratch/RtmpYcF6k7’ ‘~/tmp/scratch/RtmpYpIuPR’
‘~/tmp/scratch/RtmpYzTFyV’ ‘~/tmp/scratch/RtmpZ2TgTp’
‘~/tmp/scratch/RtmpZQ8QIN’ ‘~/tmp/scratch/RtmpZzpSps’
‘~/tmp/scratch/Rtmpa0x0dV’ ‘~/tmp/scratch/Rtmpafj3k6’
‘~/tmp/scratch/RtmpavCXCa’ ‘~/tmp/scratch/RtmpbhBCfP’
‘~/tmp/scratch/Rtmpc3gqQT’ ‘~/tmp/scratch/RtmpcDVv44’
‘~/tmp/scratch/RtmpcVub8O’ ‘~/tmp/scratch/RtmpcscBXP’
‘~/tmp/scratch/Rtmpd05DF4’ ‘~/tmp/scratch/Rtmpdj2f64’
‘~/tmp/scratch/RtmpdpWKaS’ ‘~/tmp/scratch/Rtmpdx7mrE’
‘~/tmp/scratch/Rtmpe5E5zi’ ‘~/tmp/scratch/RtmpeGFj7M’
‘~/tmp/scratch/RtmpeTFgjm’ ‘~/tmp/scratch/RtmpepT5ik’
‘~/tmp/scratch/Rtmpfk7YTC’ ‘~/tmp/scratch/Rtmpfq0ECs’
‘~/tmp/scratch/RtmpgWcJDw’ ‘~/tmp/scratch/RtmpgmFyGF’
‘~/tmp/scratch/RtmphCQl5F’ ‘~/tmp/scratch/RtmphYoVTT’
‘~/tmp/scratch/RtmphmwhMU’ ‘~/tmp/scratch/RtmphuUv0I’
‘~/tmp/scratch/Rtmpi9xTxX’ ‘~/tmp/scratch/Rtmpikjg0s’
‘~/tmp/scratch/RtmpjGR3BU’ ‘~/tmp/scratch/RtmpjbfZfA’
‘~/tmp/scratch/RtmpjcEVdq’ ‘~/tmp/scratch/Rtmpjk7buf’
‘~/tmp/scratch/RtmpjnoCCY’ ‘~/tmp/scratch/Rtmpjz4Jf6’
‘~/tmp/scratch/Rtmpk1JIU1’ ‘~/tmp/scratch/Rtmpk5r2Ry’
‘~/tmp/scratch/RtmpkKCINQ’ ‘~/tmp/scratch/RtmpkZnwwI’
‘~/tmp/scratch/RtmpkklBj9’ ‘~/tmp/scratch/Rtmpl18C9O’
‘~/tmp/scratch/RtmpleYrJm’ ‘~/tmp/scratch/RtmpmYHgOL’
‘~/tmp/scratch/RtmpmbAYKU’ ‘~/tmp/scratch/RtmpmlKeaj’
‘~/tmp/scratch/Rtmpn6GLWf’ ‘~/tmp/scratch/RtmpnrBz4e’
‘~/tmp/scratch/RtmpnzRfkk’ ‘~/tmp/scratch/RtmpoBrknF’
‘~/tmp/scratch/Rtmpos6Wk5’ ‘~/tmp/scratch/Rtmpp7HwdH’
‘~/tmp/scratch/RtmpqAa6eQ’ ‘~/tmp/scratch/RtmpqDiDs3’
‘~/tmp/scratch/RtmprLumF6’ ‘~/tmp/scratch/RtmprTLlqK’
‘~/tmp/scratch/RtmprdDSQv’ ‘~/tmp/scratch/RtmpspDWNY’
‘~/tmp/scratch/RtmptSaQbX’ ‘~/tmp/scratch/RtmpuPsPq1’
‘~/tmp/scratch/RtmpumNoH4’ ‘~/tmp/scratch/Rtmput7B9r’
‘~/tmp/scratch/Rtmpuugkl9’ ‘~/tmp/scratch/Rtmpv0ACwq’
‘~/tmp/scratch/RtmpvqCda2’ ‘~/tmp/scratch/RtmpwQByk9’
‘~/tmp/scratch/RtmpwbdkSs’ ‘~/tmp/scratch/RtmpxitXMV’
‘~/tmp/scratch/Rtmpydv77l’ ‘~/tmp/scratch/RtmpzD1H3D’
‘~/tmp/scratch/RtmpzIcxZc’ ‘~/tmp/scratch/RtmpzPwZCx’
‘~/tmp/scratch/RtmpzWhGvY’ ‘~/tmp/scratch/RtmpzjPVPN’
‘~/tmp/scratch/RtmpzpYMty’ ‘~/tmp/scratch/ccCAJUjR.s’
‘~/tmp/scratch/xvfb-run.34TLNz’ ‘~/tmp/scratch/xvfb-run.4DBhli’
‘~/tmp/scratch/xvfb-run.4aTGLc’ ‘~/tmp/scratch/xvfb-run.4xYeOp’
‘~/tmp/scratch/xvfb-run.6bXB54’ ‘~/tmp/scratch/xvfb-run.767ocx’
‘~/tmp/scratch/xvfb-run.76iupK’ ‘~/tmp/scratch/xvfb-run.78j0GL’
‘~/tmp/scratch/xvfb-run.7NWE4S’ ‘~/tmp/scratch/xvfb-run.7zpYSe’
‘~/tmp/scratch/xvfb-run.9WKNtL’ ‘~/tmp/scratch/xvfb-run.A24Isx’
‘~/tmp/scratch/xvfb-run.AB7apI’ ‘~/tmp/scratch/xvfb-run.Alk3no’
‘~/tmp/scratch/xvfb-run.AqyR4V’ ‘~/tmp/scratch/xvfb-run.BYKIXf’
‘~/tmp/scratch/xvfb-run.CD9o0U’ ‘~/tmp/scratch/xvfb-run.D2lrBw’
‘~/tmp/scratch/xvfb-run.EZ5I8u’ ‘~/tmp/scratch/xvfb-run.F2HHgE’
‘~/tmp/scratch/xvfb-run.GUp2za’ ‘~/tmp/scratch/xvfb-run.Icf3xq’
‘~/tmp/scratch/xvfb-run.JZmDTK’ ‘~/tmp/scratch/xvfb-run.LCBAOT’
‘~/tmp/scratch/xvfb-run.LjAym8’ ‘~/tmp/scratch/xvfb-run.LuOzgT’
‘~/tmp/scratch/xvfb-run.Lve17I’ ‘~/tmp/scratch/xvfb-run.NI1vJc’
‘~/tmp/scratch/xvfb-run.OASlNP’ ‘~/tmp/scratch/xvfb-run.OhEHZ2’
‘~/tmp/scratch/xvfb-run.PJy5IU’ ‘~/tmp/scratch/xvfb-run.Q0mrtY’
‘~/tmp/scratch/xvfb-run.Rnuelh’ ‘~/tmp/scratch/xvfb-run.SqLivZ’
‘~/tmp/scratch/xvfb-run.TcDGz3’ ‘~/tmp/scratch/xvfb-run.UDPC01’
‘~/tmp/scratch/xvfb-run.WP9GeM’ ‘~/tmp/scratch/xvfb-run.X1wiNN’
‘~/tmp/scratch/xvfb-run.Zet8dY’ ‘~/tmp/scratch/xvfb-run.ao0fPq’
‘~/tmp/scratch/xvfb-run.bdcjo7’ ‘~/tmp/scratch/xvfb-run.g5fHiy’
‘~/tmp/scratch/xvfb-run.gdfa5k’ ‘~/tmp/scratch/xvfb-run.hNFRVW’
‘~/tmp/scratch/xvfb-run.hPvVjP’ ‘~/tmp/scratch/xvfb-run.hm0Jti’
‘~/tmp/scratch/xvfb-run.hz0HOH’ ‘~/tmp/scratch/xvfb-run.ic5Wwz’
‘~/tmp/scratch/xvfb-run.jWRVMJ’ ‘~/tmp/scratch/xvfb-run.k6aZTr’
‘~/tmp/scratch/xvfb-run.l8E6Dp’ ‘~/tmp/scratch/xvfb-run.mg3whL’
‘~/tmp/scratch/xvfb-run.nBwsqC’ ‘~/tmp/scratch/xvfb-run.noJ5V4’
‘~/tmp/scratch/xvfb-run.nsc4W9’ ‘~/tmp/scratch/xvfb-run.oK3CoC’
‘~/tmp/scratch/xvfb-run.ocmhK2’ ‘~/tmp/scratch/xvfb-run.pgOcpf’
‘~/tmp/scratch/xvfb-run.qU9DFQ’ ‘~/tmp/scratch/xvfb-run.ql5Qhy’
‘~/tmp/scratch/xvfb-run.sEMZgy’ ‘~/tmp/scratch/xvfb-run.sTtmmu’
‘~/tmp/scratch/xvfb-run.sdw93D’ ‘~/tmp/scratch/xvfb-run.sz0VP0’
‘~/tmp/scratch/xvfb-run.uskMKS’ ‘~/tmp/scratch/xvfb-run.v1GapA’
‘~/tmp/scratch/xvfb-run.vmOplP’ ‘~/tmp/scratch/xvfb-run.wLVd7l’
‘~/tmp/scratch/xvfb-run.xXIuOm’ ‘~/tmp/scratch/xvfb-run.zd7vFk’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘R6’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc