Last updated on 2026-04-09 05:52:06 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| CongreveLamsdell2016 | 2 | 12 | ||
| ips | 14 | |||
| PlotTools | 14 | |||
| Quartet | 14 | |||
| Rogue | 1 | 2 | 11 | |
| TBRDist | 1 | 13 | ||
| Ternary | 3 | 11 | ||
| TotalCopheneticIndex | 2 | 12 | ||
| TreeDist | 3 | 11 | ||
| TreeSearch | 3 | 11 | ||
| TreeTools | 2 | 1 | 11 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Compare-methods.Rmd’ using rmarkdown
Could not fetch https://raw.githubusercontent.com/citation-style-language/styles/master/dependent/biology-letters.csl
HttpExceptionRequest Request {
host = "raw.githubusercontent.com"
port = 443
secure = True
requestHeaders = []
path = "/citation-style-language/styles/master/dependent/biology-letters.csl"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
proxySecureMode = ProxySecureWithConnect
}
(StatusCodeException (Response {responseStatus = Status {statusCode = 503, statusMessage = "Backend unavailable, connection timeout"}, responseVersion = HTTP/1.1, responseHeaders = [("Connection","keep-alive"),("Content-Length","508"),("Server","Varnish"),("Retry-After","0"),("Content-Type","text/html; charset=utf-8"),("Accept-Ranges","bytes"),("Date","Mon, 06 Apr 2026 15:02:31 GMT"),("Via","1.1 varnish"),("X-Served-By","cache-muc13977-MUC"),("X-Cache","MISS"),("X-Cache-Hits","0"),("X-Timer","S1775487750.036725,VS0,VE1303"),("Access-Control-Allow-Origin","*"),("Cross-Origin-Resource-Policy","cross-origin"),("X-Fastly-Request-ID","44292c587b2fd8eb63bb42fac723f64eeb18c16d"),("Expires","Mon, 06 Apr 2026 15:07:31 GMT"),("Vary","Authorization,Accept-Encoding")], responseBody = (), responseCookieJar = CJ {expose = []}, responseClose' = ResponseClose, responseOriginalRequest = Request {
host = "raw.githubusercontent.com"
port = 443
secure = True
requestHeaders = []
path = "/citation-style-language/styles/master/dependent/biology-letters.csl"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
proxySecureMode = ProxySecureWithConnect
}
, responseEarlyHints = []}) "\n<?xml version=\"1.0\" encoding=\"utf-8\"?>\n<!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.0 Strict//EN\"\n \"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd\">\n<html>\n <head>\n <title>503 Backend unavailable, connection timeout</title>\n </head>\n <body>\n <h1>Error 503 Backend unavailable, connection timeout</h1>\n <p>Backend unavailable, connection timeout</p>\n <h3>Error 54113</h3>\n <p>Details: cache-muc13924-MUC 1775487751 4151280391</p>\n <hr>\n <p>Varnish cache server</p>\n </body>\n</html>\n")
Error: processing vignette 'Compare-methods.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building 'Compare-methods.Rmd'
--- re-building ‘Compare-node-supports.Rmd’ using rmarkdown
--- finished re-building 'Compare-node-supports.Rmd'
--- re-building ‘Conduct-analyses.Rmd’ using rmarkdown
--- finished re-building ‘Conduct-analyses.Rmd’
SUMMARY: processing the following file failed:
‘Compare-methods.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'Compare-methods.Rmd' using rmarkdown
! Package pdftex.def Error: File `2745c4f86a636a6aa62b3c1488bb1530261237a4.pdf'
not found: using draft setting.
Error: processing vignette 'Compare-methods.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/CongreveLamsdell2016.Rcheck/vign_test/CongreveLamsdell2016/vignettes/Compare-methods.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Compare-methods.log for more info.
--- failed re-building 'Compare-methods.Rmd'
--- re-building 'Compare-node-supports.Rmd' using rmarkdown
! Package pdftex.def Error: File `8362126ec372b3a18ced7397d143631dd6136514.pdf'
not found: using draft setting.
Error: processing vignette 'Compare-node-supports.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/CongreveLamsdell2016.Rcheck/vign_test/CongreveLamsdell2016/vignettes/Compare-node-supports.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Compare-node-supports.log for more info.
--- failed re-building 'Compare-node-supports.Rmd'
--- re-building 'Conduct-analyses.Rmd' using rmarkdown
--- finished re-building 'Conduct-analyses.Rmd'
SUMMARY: processing the following files failed:
'Compare-methods.Rmd' 'Compare-node-supports.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: ERROR: 1, NOTE: 2, OK: 11
Version: 2.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Bayesian.Rmd’ using rmarkdown
Quitting from Bayesian.Rmd:56-75 [load-trees]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `scan()`:
! cannot read from connection
---
Backtrace:
▆
1. └─ape::read.nexus(run1.t)
2. └─base::scan(file = file, what = "", sep = "\n", quiet = TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Bayesian.Rmd' failed with diagnostics:
cannot read from connection
--- failed re-building ‘Bayesian.Rmd’
SUMMARY: processing the following file failed:
‘Bayesian.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.2.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘matrixStats’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 1, OK: 13
Version: 2.0.0
Check: installed package size
Result: NOTE
installed size is 9.7Mb
sub-directories of 1Mb or more:
libs 9.6Mb
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 3, OK: 11
Version: 2.3.6
Check: installed package size
Result: NOTE
installed size is 6.4Mb
sub-directories of 1Mb or more:
doc 5.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 12
Version: 2.0.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 3, OK: 11
Version: 2.12.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘TreeDistData’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.12.0
Check: installed package size
Result: NOTE
installed size is 6.7Mb
sub-directories of 1Mb or more:
doc 1.1Mb
libs 4.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 3, OK: 11
Version: 1.7.0
Check: installed package size
Result: NOTE
installed size is 6.3Mb
sub-directories of 1Mb or more:
datasets 1.6Mb
doc 1.3Mb
libs 1.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: WARN: 2, NOTE: 1, OK: 11
Version: 2.2.0
Check: Rd files
Result: WARN
2026-03-23 09:58:03.478 R[70648:465865] XType: Using static font registry.
Flavor: r-release-macos-arm64
Version: 2.2.0
Check: installed package size
Result: NOTE
installed size is 7.6Mb
sub-directories of 1Mb or more:
R 1.1Mb
libs 5.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.2.0
Check: Rd files
Result: WARN
2026-03-20 23:16:39.163 R[26288:198695] XType: Using static font registry.
Flavor: r-oldrel-macos-arm64