Last updated on 2026-04-09 05:51:55 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| qtl2ggplot | 2 | 3 | 9 |
| qtl2pattern | 14 | ||
| qtlhot | 14 | ||
| qtlnet | 2 | 12 |
Current CRAN status: ERROR: 2, NOTE: 3, OK: 9
Version: 1.2.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘qtl2ggplot.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex_alleleprobs.rds'
Content type 'application/octet-stream' length 4912794 bytes (4.7 MB)
==================================================
downloaded 4.7 MB
trying URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex_genoprobs.rds'
Content type 'application/octet-stream' length 20180952 bytes (19.2 MB)
================================
downloaded 12.7 MB
Quitting from qtl2ggplot.Rmd:173-181 [unnamed-chunk-26]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! download from 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex_genoprobs.rds' failed
---
Backtrace:
▆
1. └─utils::download.file(file, tmpfile)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'qtl2ggplot.Rmd' failed with diagnostics:
download from 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex_genoprobs.rds' failed
--- failed re-building ‘qtl2ggplot.Rmd’
SUMMARY: processing the following file failed:
‘qtl2ggplot.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘qtl2ggplot.Rmd’ using rmarkdown
trying URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex_alleleprobs.rds'
Content type 'application/octet-stream' length 4912794 bytes (4.7 MB)
==================================================
downloaded 4.7 MB
trying URL 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex_genoprobs.rds'
Content type 'application/octet-stream' length 20180952 bytes (19.2 MB)
================================
downloaded 12.6 MB
Quitting from qtl2ggplot.Rmd:173-181 [unnamed-chunk-26]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! download from 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex_genoprobs.rds' failed
---
Backtrace:
▆
1. └─utils::download.file(file, tmpfile)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'qtl2ggplot.Rmd' failed with diagnostics:
download from 'https://raw.githubusercontent.com/rqtl/qtl2data/master/DOex/DOex_genoprobs.rds' failed
--- failed re-building ‘qtl2ggplot.Rmd’
SUMMARY: processing the following file failed:
‘qtl2ggplot.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.2.6
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
doc 4.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: NOTE: 2, OK: 12
Version: 1.5.4
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Brian S. Yandell <brian.yandell@wisc.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Elias", "Chaibub"),
family = "Neto",
role = "aut",
email = "echaibub@hotmail.com"),
person(given = c("Brian", "S."),
family = "yandell",
role = c("aut", "cre"),
email = "brian.yandell@wisc.edu"))
as necessary.
Found the following URLs which should use \doi (with the DOI name only):
File ‘Pscdbp.Rd’:
http://dx.doi.org/10.1371/journal.pgen.0020130
http://dx.doi.org/10.1214/09-AOAS288
File ‘bic.Rd’:
http://dx.doi.org/10.1214/09-AOAS288
File ‘mcmc.Rd’:
http://dx.doi.org/10.1214/09-AOAS288
http://dx.doi.org/10.1007/s10994-008-5057-7
File ‘parents.Rd’:
http://dx.doi.org/10.1214/09-AOAS288
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc