CRAN Package Check Results for Maintainer ‘Boyu Ren <bren at mgb.org>’

Last updated on 2026-01-12 05:50:54 CET.

Package	ERROR	OK
GPCERF	9	4

Package GPCERF

Current CRAN status: ERROR: 9, OK: 4

Version: 0.2.4
Check: DESCRIPTION meta-information
Result: NOTE Author field differs from that derived from Authors@R Author: ‘Naeem Khoshnevis [aut] (<https://orcid.org/0000-0003-4315-1426>, HUIT), Boyu Ren [aut, cre] (<https://orcid.org/0000-0002-5300-1184>, McLean Hospital), Tanujit Dey [ctb] (<https://orcid.org/0000-0001-5559-211X>, HMS), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’ Authors@R: ‘Naeem Khoshnevis [aut] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: HUIT), Boyu Ren [aut, cre] (ORCID: <https://orcid.org/0000-0002-5300-1184>, AFFILIATION: McLean Hospital), Tanujit Dey [ctb] (ORCID: <https://orcid.org/0000-0001-5559-211X>, AFFILIATION: HMS), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [127s/137s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-08 17:36:11.455299 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-08 17:36:16.060026 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-08 17:36:19.990953 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-08 17:36:26.559479 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:36:30.179168 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:36:34.024584 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3014181 on localhost:11724 at 17:36:34.384 2026-01-08 17:36:38.540044 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.512 s. 2026-01-08 17:36:38.629733 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:36:42.840437 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:36:46.720286 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-08 17:36:50.986718 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:36:55.203839 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:36:57.932947 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:37:01.071653 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:01.118224 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:37:04.914877 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:04.940563 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:04.980406 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:05.003932 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:05.029508 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:05.072436 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:05.111339 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:05.148572 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:37:08.635914 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 starting worker pid=3022800 on localhost:11724 at 17:37:09.014 starting worker pid=3022801 on localhost:11724 at 17:37:09.049 2026-01-08 17:37:18.597531 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:37:22.127061 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:22.143027 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 17:37:22.151588 gimli2 3006428 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=3025943 on localhost:11724 at 17:37:22.546 2026-01-08 17:37:27.813991 gimli2 3006428 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.65700000000001 s.} ... 2026-01-08 17:37:27.816913 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3026783 on localhost:11724 at 17:37:28.197 2026-01-08 17:37:32.716487 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.90000000000001 s. 2026-01-08 17:37:32.738425 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=3027750 on localhost:11724 at 17:37:33.301 2026-01-08 17:37:38.701316 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.96300000000001 s. 2026-01-08 17:37:38.703661 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 16.56 s. 2026-01-08 17:37:38.717378 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:38.729319 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 17:37:38.767579 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:38.779333 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 17:37:38.934711 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:38.945199 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 17:37:38.981419 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:37:41.546864 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:41.559959 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 17:37:41.597939 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32 2026-01-08 17:37:41.615811 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 17:37:41.695397 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-08 17:37:45.531497 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:37:49.504146 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3033032 on localhost:11724 at 17:37:49.910 2026-01-08 17:37:54.239774 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.735 s. 2026-01-08 17:37:54.248972 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=3034051 on localhost:11724 at 17:37:54.717 2026-01-08 17:38:00.281312 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 6.039 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-08 17:38:00.424048 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:38:03.100469 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:38:06.898516 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3038195 on localhost:11724 at 17:38:07.226 2026-01-08 17:38:11.854297 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.95599999999999 s. 2026-01-08 17:38:11.916521 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 17:38:15.809913 gimli2 3006428 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=3040419 on localhost:11724 at 17:38:16.159 2026-01-08 17:38:22.537616 gimli2 3006428 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.72499999999999 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [70s/99s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-11 13:23:54.719216 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-11 13:23:58.092369 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-11 13:24:01.796921 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-11 13:24:07.594402 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:24:10.810829 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:24:14.294202 gimli1 3181068 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3195317 on localhost:11258 at 13:24:14.622 2026-01-11 13:24:16.880079 gimli1 3181068 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.586 s. 2026-01-11 13:24:16.907819 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:24:19.88448 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:24:23.569129 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-11 13:24:27.07703 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:24:30.191596 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:32.382421 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:24:34.899933 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:34.939927 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:24:38.094106 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:38.131172 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:38.158776 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:38.189667 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:38.216478 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:38.240955 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:38.269964 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:38.301205 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:24:41.327774 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 starting worker pid=3216499 on localhost:11258 at 13:24:41.679 starting worker pid=3216501 on localhost:11258 at 13:24:41.715 2026-01-11 13:24:47.408525 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:24:50.748382 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:24:50.766242 gimli1 3181068 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-11 13:24:50.772877 gimli1 3181068 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=3225309 on localhost:11258 at 13:24:51.117 2026-01-11 13:24:54.217204 gimli1 3181068 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.443 s.} ... 2026-01-11 13:24:54.219234 gimli1 3181068 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3228753 on localhost:11258 at 13:24:54.525 2026-01-11 13:24:57.304408 gimli1 3181068 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.08499999999999 s. 2026-01-11 13:24:57.308022 gimli1 3181068 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=3231350 on localhost:11258 at 13:24:57.565 2026-01-11 13:25:00.621734 gimli1 3181068 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.31399999999999 s. 2026-01-11 13:25:00.623459 gimli1 3181068 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.857 s. 2026-01-11 13:25:00.626593 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:25:00.642406 gimli1 3181068 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-11 13:25:00.655929 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:25:00.674866 gimli1 3181068 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-11 13:25:00.757696 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:25:00.777152 gimli1 3181068 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-11 13:25:00.790485 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:25:03.164173 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:25:03.182313 gimli1 3181068 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-11 13:25:03.19954 gimli1 3181068 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-10 r89298), detected cores: 64 2026-01-11 13:25:03.212884 gimli1 3181068 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-11 13:25:03.231138 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-11 13:25:06.475257 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:25:09.642612 gimli1 3181068 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3243037 on localhost:11258 at 13:25:09.895 2026-01-11 13:25:12.137145 gimli1 3181068 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.494 s. 2026-01-11 13:25:12.139302 gimli1 3181068 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=3244913 on localhost:11258 at 13:25:12.535 2026-01-11 13:25:15.291545 gimli1 3181068 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.152 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-11 13:25:15.335648 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:25:17.45114 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:25:20.497377 gimli1 3181068 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3251213 on localhost:11258 at 13:25:20.779 2026-01-11 13:25:23.243449 gimli1 3181068 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.74600000000001 s. 2026-01-11 13:25:23.281597 gimli1 3181068 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-11 13:25:26.150746 gimli1 3181068 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=3254565 on localhost:11258 at 13:25:26.493 2026-01-11 13:25:30.013587 gimli1 3181068 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.861 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [146s/402s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-08 22:39:30.998349 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-08 22:39:45.656449 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-08 22:40:01.852319 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-08 22:40:21.234273 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:40:28.984776 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:40:38.156516 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=2672205 on localhost:11538 at 22:40:38.803 2026-01-08 22:40:49.472605 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 11.316 s. 2026-01-08 22:40:49.644656 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:40:59.094515 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:41:10.359439 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-08 22:41:20.106376 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:41:32.451833 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:41:44.879764 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:41:51.299549 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:41:51.439171 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:42:01.591402 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:42:01.677539 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:42:01.772459 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:42:01.943199 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:42:02.028103 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:42:02.113674 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:42:02.344102 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:42:02.619447 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:42:11.027693 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 starting worker pid=2681134 on localhost:11538 at 22:42:12.114 starting worker pid=2681139 on localhost:11538 at 22:42:13.137 2026-01-08 22:42:47.407496 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:42:58.24701 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:42:58.273742 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 22:42:58.291538 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=2685305 on localhost:11538 at 22:42:59.281 2026-01-08 22:43:11.302314 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 13.003 s.} ... 2026-01-08 22:43:11.307634 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=2686266 on localhost:11538 at 22:43:12.051 2026-01-08 22:43:26.851436 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 15.544 s. 2026-01-08 22:43:26.859962 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=2687587 on localhost:11538 at 22:43:27.603 2026-01-08 22:43:46.131346 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 19.271 s. 2026-01-08 22:43:46.140441 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 47.867 s. 2026-01-08 22:43:46.246974 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:43:46.269138 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 22:43:46.323866 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:43:46.350092 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 22:43:46.460846 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:43:46.529205 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 22:43:46.600512 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:43:54.081097 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:43:54.654818 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 22:43:54.682213 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24 2026-01-08 22:43:54.759469 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-08 22:43:54.90262 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-08 22:44:07.275781 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:44:18.096669 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=2692575 on localhost:11538 at 22:44:19.190 2026-01-08 22:44:33.57265 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 15.476 s. 2026-01-08 22:44:33.584849 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=2693949 on localhost:11538 at 22:44:34.551 2026-01-08 22:44:53.517762 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 19.933 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-08 22:44:54.772832 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:45:07.943978 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:45:16.283155 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=2699042 on localhost:11538 at 22:45:16.973 2026-01-08 22:45:27.913061 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 11.63 s. 2026-01-08 22:45:27.98944 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-08 22:45:39.165211 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=2702052 on localhost:11538 at 22:45:40.347 2026-01-08 22:45:55.256909 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 16.088 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [142s/346s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-03 08:34:06.73367 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-03 08:34:20.269132 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-03 08:34:30.62967 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-03 08:34:47.635888 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:34:57.988268 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:35:08.016407 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1195763 on localhost:11437 at 08:35:08.561 2026-01-03 08:35:17.350611 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.33399999999999 s. 2026-01-03 08:35:17.547488 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:35:26.491516 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:35:35.733676 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-03 08:35:46.098705 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:35:55.270946 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:36:02.375742 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:36:08.468615 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:36:08.515654 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:36:18.895044 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:36:18.951343 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:36:19.008601 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:36:19.119817 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:36:19.189037 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:36:19.246526 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:36:19.309588 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:36:19.387205 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:36:30.648525 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 starting worker pid=1204902 on localhost:11437 at 08:36:31.437 starting worker pid=1204903 on localhost:11437 at 08:36:31.474 2026-01-03 08:36:56.776655 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:37:09.87984 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:37:09.964198 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-03 08:37:10.011706 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=1214291 on localhost:11437 at 08:37:10.686 2026-01-03 08:37:22.126932 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 12.103 s.} ... 2026-01-03 08:37:22.135026 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1215630 on localhost:11437 at 08:37:22.953 2026-01-03 08:37:34.873498 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.739 s. 2026-01-03 08:37:34.878176 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=1217201 on localhost:11437 at 08:37:35.401 2026-01-03 08:37:49.107587 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 14.23 s. 2026-01-03 08:37:49.115177 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 39.151 s. 2026-01-03 08:37:49.131002 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:37:49.155499 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-03 08:37:49.20553 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:37:49.229289 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-03 08:37:49.339863 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:37:49.363846 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-03 08:37:49.414392 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:37:56.6043 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:37:56.633393 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-03 08:37:56.68298 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24 2026-01-03 08:37:56.71309 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-03 08:37:56.833935 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-03 08:38:07.282704 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:38:18.375271 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1221451 on localhost:11437 at 08:38:19.028 2026-01-03 08:38:30.977238 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.601 s. 2026-01-03 08:38:30.981696 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=1223815 on localhost:11437 at 08:38:31.976 2026-01-03 08:38:44.627997 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 13.646 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-03 08:38:44.84637 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:38:53.749221 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:39:04.146436 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=1228863 on localhost:11437 at 08:39:04.873 2026-01-03 08:39:17.105902 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.959 s. 2026-01-03 08:39:17.167503 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-03 08:39:28.738544 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=1232048 on localhost:11437 at 08:39:29.330 2026-01-03 08:39:40.705118 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 11.963 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.4
Check: tests
Result: ERROR Running 'testthat.R' [142s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-09 08:51:11.554661 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-09 08:51:17.595399 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-09 08:51:22.974199 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-09 08:51:31.719767 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:51:36.973441 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:51:42.308105 CRANWIN3 18420 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=59688 on localhost:11752 at 08:51:42.602 2026-01-09 08:51:45.312082 CRANWIN3 18420 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.02 s. 2026-01-09 08:51:45.361319 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:51:50.682248 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:51:56.31883 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-09 08:52:01.952698 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:52:06.974693 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:10.320436 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:52:14.849502 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:14.864144 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:52:19.934876 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:19.950705 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:19.965118 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:19.980581 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:19.992545 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:20.003711 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:20.011906 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:20.020799 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:52:25.251003 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 starting worker pid=79568 on localhost:11752 at 08:52:25.467 starting worker pid=42964 on localhost:11752 at 08:52:25.482 2026-01-09 08:52:32.333428 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:52:37.654008 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:37.657777 CRANWIN3 18420 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 08:52:37.662639 CRANWIN3 18420 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=57400 on localhost:11752 at 08:52:37.917 2026-01-09 08:52:40.769007 CRANWIN3 18420 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.11 s.} ... 2026-01-09 08:52:40.772817 CRANWIN3 18420 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=60060 on localhost:11752 at 08:52:41.041 2026-01-09 08:52:43.794058 CRANWIN3 18420 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.02 s. 2026-01-09 08:52:43.79696 CRANWIN3 18420 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=56956 on localhost:11752 at 08:52:44.048 2026-01-09 08:52:47.27052 CRANWIN3 18420 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.48 s. 2026-01-09 08:52:47.273052 CRANWIN3 18420 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.62 s. 2026-01-09 08:52:47.277307 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:47.279618 CRANWIN3 18420 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 08:52:47.291471 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:47.293798 CRANWIN3 18420 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 08:52:47.321608 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:47.324219 CRANWIN3 18420 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 08:52:47.333009 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:52:51.178586 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:51.181236 CRANWIN3 18420 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 08:52:51.192893 CRANWIN3 18420 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-08 r89292 ucrt), detected cores: 96 2026-01-09 08:52:51.195469 CRANWIN3 18420 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 08:52:51.229757 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-09 08:52:56.43459 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:53:01.79937 CRANWIN3 18420 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=48500 on localhost:11752 at 08:53:02.067 2026-01-09 08:53:04.83781 CRANWIN3 18420 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.03999999999999 s. 2026-01-09 08:53:04.840579 CRANWIN3 18420 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=93564 on localhost:11752 at 08:53:05.087 2026-01-09 08:53:08.053484 CRANWIN3 18420 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.22000000000001 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-09 08:53:08.110764 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:53:12.336393 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:53:17.410361 CRANWIN3 18420 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=94504 on localhost:11752 at 08:53:17.669 2026-01-09 08:53:20.359053 CRANWIN3 18420 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.95000000000002 s. 2026-01-09 08:53:20.388875 CRANWIN3 18420 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 08:53:25.848187 CRANWIN3 18420 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=53196 on localhost:11752 at 08:53:26.090 2026-01-09 08:53:29.62167 CRANWIN3 18420 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.78 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [83s/152s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-07 05:52:14.359857 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-07 05:52:20.045834 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-07 05:52:25.392892 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-07 05:52:34.357755 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:52:39.072313 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:52:43.563875 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3394364 on localhost:11956 at 05:52:43.935 2026-01-07 05:52:47.861479 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.297 s. 2026-01-07 05:52:47.951594 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:52:52.307539 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:52:57.765159 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-07 05:53:03.313407 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:53:08.207243 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:12.353824 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:53:15.707112 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:15.73402 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:53:20.245301 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:20.276569 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:20.297124 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:20.33072 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:20.354787 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:20.388278 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:20.429523 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:20.471643 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:53:24.65668 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 starting worker pid=3404209 on localhost:11956 at 05:53:24.972 starting worker pid=3404208 on localhost:11956 at 05:53:25.098 2026-01-07 05:53:33.402274 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:53:38.005343 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:38.013165 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 05:53:38.020826 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=3407430 on localhost:11956 at 05:53:38.423 2026-01-07 05:53:43.297664 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.27500000000001 s.} ... 2026-01-07 05:53:43.300836 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3408703 on localhost:11956 at 05:53:43.714 2026-01-07 05:53:47.290467 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.98899999999999 s. 2026-01-07 05:53:47.292852 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=3410376 on localhost:11956 at 05:53:47.670 2026-01-07 05:53:52.94118 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.64800000000001 s. 2026-01-07 05:53:52.943611 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.931 s. 2026-01-07 05:53:52.948986 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:52.963566 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 05:53:52.983352 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:52.992322 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 05:53:53.058511 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:53.067342 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 05:53:53.093966 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:53:56.814679 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:56.827197 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 05:53:56.852689 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32 2026-01-07 05:53:56.865293 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 05:53:56.929239 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-07 05:54:02.274351 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:54:07.719117 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3415269 on localhost:11956 at 05:54:08.123 2026-01-07 05:54:12.190488 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.471 s. 2026-01-07 05:54:12.192771 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=3416351 on localhost:11956 at 05:54:12.611 2026-01-07 05:54:16.895272 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.702 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-07 05:54:16.960993 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:54:20.649861 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:54:25.366387 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3419951 on localhost:11956 at 05:54:25.696 2026-01-07 05:54:29.361293 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.995 s. 2026-01-07 05:54:29.415876 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 05:54:34.66923 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=3422324 on localhost:11956 at 05:54:35.178 2026-01-07 05:54:41.229543 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.55700000000002 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64

Version: 0.2.4
Check: tests
Result: ERROR Running ‘testthat.R’ [84s/155s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-10 05:44:23.708058 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-10 05:44:29.631677 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-10 05:44:34.675044 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-10 05:44:43.048047 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:44:48.008036 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:44:53.087554 gimli2 3011003 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3021815 on localhost:11388 at 05:44:53.536 2026-01-10 05:44:57.85586 gimli2 3011003 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.768 s. 2026-01-10 05:44:57.949511 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:45:02.903948 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:45:08.381092 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-10 05:45:15.407789 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:45:20.544796 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:24.405085 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:45:27.475589 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:27.517959 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:45:33.026586 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:33.054556 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:33.088362 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:33.120388 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:33.15884 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:33.190977 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:33.231292 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:33.272983 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:45:38.454225 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 starting worker pid=3033020 on localhost:11388 at 05:45:38.898 starting worker pid=3033021 on localhost:11388 at 05:45:38.963 2026-01-10 05:45:47.950924 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:45:53.073812 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:45:53.084273 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-10 05:45:53.092759 gimli2 3011003 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=3036523 on localhost:11388 at 05:45:53.549 2026-01-10 05:45:57.833293 gimli2 3011003 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.738 s.} ... 2026-01-10 05:45:57.83587 gimli2 3011003 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3038237 on localhost:11388 at 05:45:58.230 2026-01-10 05:46:02.001351 gimli2 3011003 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.16600000000001 s. 2026-01-10 05:46:02.003806 gimli2 3011003 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=3039469 on localhost:11388 at 05:46:02.346 2026-01-10 05:46:06.82712 gimli2 3011003 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.82299999999999 s. 2026-01-10 05:46:06.829326 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 13.746 s. 2026-01-10 05:46:06.842441 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:46:06.851893 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-10 05:46:06.875941 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:46:06.88729 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-10 05:46:06.959885 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:46:06.971212 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-10 05:46:07.003303 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:46:10.617239 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:46:10.62714 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-10 05:46:10.653222 gimli2 3011003 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32 2026-01-10 05:46:10.662468 gimli2 3011003 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-10 05:46:10.725307 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-10 05:46:15.372012 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:46:20.149204 gimli2 3011003 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3044382 on localhost:11388 at 05:46:20.470 2026-01-10 05:46:23.818765 gimli2 3011003 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.67 s. 2026-01-10 05:46:23.821162 gimli2 3011003 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=3045024 on localhost:11388 at 05:46:24.144 2026-01-10 05:46:29.278239 gimli2 3011003 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.45699999999999 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-10 05:46:29.346493 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:46:32.92434 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:46:37.524607 gimli2 3011003 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=3048654 on localhost:11388 at 05:46:37.861 2026-01-10 05:46:42.072946 gimli2 3011003 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.548 s. 2026-01-10 05:46:42.100316 gimli2 3011003 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-10 05:46:47.071975 gimli2 3011003 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=3051876 on localhost:11388 at 05:46:47.489 2026-01-10 05:46:52.515042 gimli2 3011003 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.441 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 0.2.4
Check: tests
Result: ERROR Running 'testthat.R' [146s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-07 09:21:17.114046 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-07 09:21:22.963045 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-07 09:21:28.917937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-07 09:21:37.906501 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:21:43.295393 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:21:48.5217 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=27524 on localhost:11772 at 09:21:48.807 2026-01-07 09:21:51.492925 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.97000000000001 s. 2026-01-07 09:21:51.572678 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:21:57.483563 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:03.252271 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-07 09:22:09.361009 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:14.96016 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:18.549809 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:23.108796 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:23.122847 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:28.440489 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.452898 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.461225 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.471676 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.480077 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.489696 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.500732 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:28.516936 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:33.534709 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 starting worker pid=82400 on localhost:11772 at 09:22:33.801 starting worker pid=33968 on localhost:11772 at 09:22:33.852 2026-01-07 09:22:40.92937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:22:46.552524 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:46.555454 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:22:46.559623 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=99404 on localhost:11772 at 09:22:46.820 2026-01-07 09:22:49.623891 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.05999999999999 s.} ... 2026-01-07 09:22:49.626153 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=105556 on localhost:11772 at 09:22:49.878 2026-01-07 09:22:52.388816 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.75 s. 2026-01-07 09:22:52.391919 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=76496 on localhost:11772 at 09:22:52.702 2026-01-07 09:22:56.076346 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.68000000000001 s. 2026-01-07 09:22:56.079143 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.53 s. 2026-01-07 09:22:56.083799 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:56.086699 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:22:56.099104 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:56.101404 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:22:56.143046 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:22:56.145554 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:22:56.157861 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:00.46251 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:23:00.465065 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:23:00.476378 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96 2026-01-07 09:23:00.479095 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-07 09:23:00.517118 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-07 09:23:05.955452 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:11.266958 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=107288 on localhost:11772 at 09:23:11.526 2026-01-07 09:23:14.0467 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.78 s. 2026-01-07 09:23:14.049096 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=27816 on localhost:11772 at 09:23:14.321 2026-01-07 09:23:17.215913 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.16 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-07 09:23:17.269341 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:21.954476 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:27.52312 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=57564 on localhost:11772 at 09:23:27.794 2026-01-07 09:23:30.289776 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.77000000000001 s. 2026-01-07 09:23:30.317935 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-07 09:23:35.670567 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=87672 on localhost:11772 at 09:23:35.908 2026-01-07 09:23:39.186142 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.5 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-release-windows-x86_64

Version: 0.2.4
Check: tests
Result: ERROR Running 'testthat.R' [206s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2026-01-09 10:33:06.478834 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls Saving _problems/test-compute_deriv_nn-21.R 2026-01-09 10:33:14.744065 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_deriv_weights_gp-17.R 2026-01-09 10:33:22.865333 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_m_sigma-32.R 2026-01-09 10:33:35.073131 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:33:43.423421 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:33:51.835868 CRANWIN2 30996 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=42936 on localhost:11183 at 10:33:52.160 2026-01-09 10:33:55.550407 CRANWIN2 30996 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.72 s. 2026-01-09 10:33:55.616846 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:34:03.720979 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:34:12.061289 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-compute_weight_gp-49.R 2026-01-09 10:34:20.173761 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:34:27.776617 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:34:32.39206 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:34:39.265904 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:34:39.286674 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:34:47.256581 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:34:47.266694 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:34:47.27726 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:34:47.288082 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:34:47.299382 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:34:47.310172 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:34:47.325159 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:34:47.34312 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:34:55.51912 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 starting worker pid=21528 on localhost:11183 at 10:34:55.832 starting worker pid=47492 on localhost:11183 at 10:34:55.858 2026-01-09 10:35:04.862955 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:35:13.286863 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:35:13.28911 CRANWIN2 30996 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 10:35:13.292604 CRANWIN2 30996 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=72980 on localhost:11183 at 10:35:13.658 2026-01-09 10:35:17.449907 CRANWIN2 30996 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.16 s.} ... 2026-01-09 10:35:17.453381 CRANWIN2 30996 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=50080 on localhost:11183 at 10:35:17.793 2026-01-09 10:35:21.248283 CRANWIN2 30996 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.78999999999999 s. 2026-01-09 10:35:21.251949 CRANWIN2 30996 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=33184 on localhost:11183 at 10:35:21.575 2026-01-09 10:35:25.927764 CRANWIN2 30996 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.66999999999999 s. 2026-01-09 10:35:25.931689 CRANWIN2 30996 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 12.64 s. 2026-01-09 10:35:25.939405 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:35:25.944181 CRANWIN2 30996 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 10:35:25.967244 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:35:25.971642 CRANWIN2 30996 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 10:35:26.019282 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:35:26.023464 CRANWIN2 30996 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 10:35:26.045738 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:35:33.032444 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:35:33.035853 CRANWIN2 30996 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 10:35:33.052707 CRANWIN2 30996 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56 2026-01-09 10:35:33.056044 CRANWIN2 30996 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2026-01-09 10:35:33.101894 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... Saving _problems/test-estimate_gps-15.R 2026-01-09 10:35:40.823998 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:35:48.303546 CRANWIN2 30996 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=23564 on localhost:11183 at 10:35:48.566 2026-01-09 10:35:51.623005 CRANWIN2 30996 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.31 s. 2026-01-09 10:35:51.625712 CRANWIN2 30996 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=110680 on localhost:11183 at 10:35:51.937 2026-01-09 10:35:55.263987 CRANWIN2 30996 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.64000000000001 s. Saving _problems/test-estimate_mean_sd_nn-37.R 2026-01-09 10:35:55.334738 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:36:01.77338 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:36:09.921935 CRANWIN2 30996 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=92976 on localhost:11183 at 10:36:10.179 2026-01-09 10:36:13.672318 CRANWIN2 30996 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.75 s. 2026-01-09 10:36:13.71422 CRANWIN2 30996 GPCERF estimate_gps INFO: Started estimating GPS values ... 2026-01-09 10:36:22.172253 CRANWIN2 30996 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=76268 on localhost:11183 at 10:36:22.457 2026-01-09 10:36:26.996252 CRANWIN2 30996 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.81 s.} ... [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ── Expected `deriv_val[1, 1]` to equal 1.558466. Differences: `actual`: -1.0 `expected`: 1.6 ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ── Expected `weights[37]` to equal 3.307249e-05. Differences: `actual`: -0.00011 `expected`: 0.00003 ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ── Expected `gp_cerf[10]` to equal 2.105425. Differences: `actual`: -6.1 `expected`: 2.1 ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ───────────── Expected `weight$weight[28]` to equal 0.0002182767. Differences: `actual`: 0.00000 `expected`: 0.00022 ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ─────── Expected `gps_m$gps[4, 1]` to equal 8.74310154. Differences: `actual`: 7.3 `expected`: 8.7 ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ── Expected `val[10]` to equal 5.031225. Differences: `actual`: 5.067 `expected`: 5.031 [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64