Last updated on 2026-08-01 05:56:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.10 | 23.24 | 204.03 | 227.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.10 | 14.38 | 147.10 | 161.48 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.10 | 36.00 | 333.13 | 369.13 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.10 | 16.00 | 133.56 | 149.56 | OK | |
| r-devel-windows-x86_64 | 1.0.10 | 26.00 | 181.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.0.10 | 20.00 | 194.60 | 214.60 | OK | |
| r-release-linux-x86_64 | 1.0.10 | 17.54 | 191.59 | 209.13 | OK | |
| r-release-macos-arm64 | 1.0.10 | 7.00 | 55.00 | 62.00 | OK | |
| r-release-macos-x86_64 | 1.0.10 | 16.00 | 173.00 | 189.00 | OK | |
| r-release-windows-x86_64 | 1.0.10 | 27.00 | 186.00 | 213.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.10 | 6.00 | 45.00 | 51.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.10 | 16.00 | 208.00 | 224.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.10 | 34.00 | 246.00 | 280.00 | OK |
Version: 1.0.10
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0wBvRa’ ‘~/tmp/scratch/Rtmp0zgbxz’
‘~/tmp/scratch/Rtmp1HdXCn’ ‘~/tmp/scratch/Rtmp1Znxfh’
‘~/tmp/scratch/Rtmp2FwhqJ’ ‘~/tmp/scratch/Rtmp36mOQQ’
‘~/tmp/scratch/Rtmp3O52GE’ ‘~/tmp/scratch/Rtmp3iVQ3c’
‘~/tmp/scratch/Rtmp3oU6Pe’ ‘~/tmp/scratch/Rtmp44xgPr’
‘~/tmp/scratch/Rtmp46yuVj’ ‘~/tmp/scratch/Rtmp4B9Ln5’
‘~/tmp/scratch/Rtmp4zK1Tt’ ‘~/tmp/scratch/Rtmp52Pw7s’
‘~/tmp/scratch/Rtmp58GYDk’ ‘~/tmp/scratch/Rtmp599owj’
‘~/tmp/scratch/Rtmp6IVdCc’ ‘~/tmp/scratch/Rtmp74UKV4’
‘~/tmp/scratch/Rtmp7dWL5P’ ‘~/tmp/scratch/Rtmp7syxlq’
‘~/tmp/scratch/Rtmp88x6tW’ ‘~/tmp/scratch/Rtmp8GaZKZ’
‘~/tmp/scratch/Rtmp9075B0’ ‘~/tmp/scratch/Rtmp91sKVY’
‘~/tmp/scratch/Rtmp9HDDSr’ ‘~/tmp/scratch/Rtmp9d4JH1’
‘~/tmp/scratch/RtmpA3W53T’ ‘~/tmp/scratch/RtmpAD34fR’
‘~/tmp/scratch/RtmpAbgm9u’ ‘~/tmp/scratch/RtmpBfjMI3’
‘~/tmp/scratch/RtmpBjRrPZ’ ‘~/tmp/scratch/RtmpBsw89K’
‘~/tmp/scratch/RtmpC0I4Fa’ ‘~/tmp/scratch/RtmpC8hVt4’
‘~/tmp/scratch/RtmpD6grg6’ ‘~/tmp/scratch/RtmpDAktLU’
‘~/tmp/scratch/RtmpDrVlW2’ ‘~/tmp/scratch/RtmpDwC1Z6’
‘~/tmp/scratch/RtmpEO1xri’ ‘~/tmp/scratch/RtmpEYXy4J’
‘~/tmp/scratch/RtmpF3LiCd’ ‘~/tmp/scratch/RtmpFw6aI5’
‘~/tmp/scratch/RtmpG8xvD6’ ‘~/tmp/scratch/RtmpGesbwO’
‘~/tmp/scratch/RtmpGqzgyu’ ‘~/tmp/scratch/RtmpGrvXF5’
‘~/tmp/scratch/RtmpHhNYmM’ ‘~/tmp/scratch/RtmpHnMhDL’
‘~/tmp/scratch/RtmpIl0wMG’ ‘~/tmp/scratch/RtmpJ4BBHH’
‘~/tmp/scratch/RtmpJqA0y8’ ‘~/tmp/scratch/RtmpK6GgOr’
‘~/tmp/scratch/RtmpK6q9Pg’ ‘~/tmp/scratch/RtmpKCNWt4’
‘~/tmp/scratch/RtmpKE0mJD’ ‘~/tmp/scratch/RtmpKRiZeV’
‘~/tmp/scratch/RtmpKrlcrk’ ‘~/tmp/scratch/RtmpLCZzii’
‘~/tmp/scratch/RtmpLOgzeY’ ‘~/tmp/scratch/RtmpLwX2W5’
‘~/tmp/scratch/RtmpM9dTNx’ ‘~/tmp/scratch/RtmpMl6o1a’
‘~/tmp/scratch/RtmpMt56MN’ ‘~/tmp/scratch/RtmpN1bZ8Z’
‘~/tmp/scratch/RtmpN1gbUS’ ‘~/tmp/scratch/RtmpO1Vwzg’
‘~/tmp/scratch/RtmpO2jA9w’ ‘~/tmp/scratch/RtmpOMkJ2W’
‘~/tmp/scratch/RtmpOmHRPr’ ‘~/tmp/scratch/RtmpP3yzEV’
‘~/tmp/scratch/RtmpPiq28B’ ‘~/tmp/scratch/RtmpQNlOWH’
‘~/tmp/scratch/RtmpQs30yW’ ‘~/tmp/scratch/RtmpRRRG8l’
‘~/tmp/scratch/RtmpRhLvl8’ ‘~/tmp/scratch/RtmpSOBBwn’
‘~/tmp/scratch/RtmpSdY7Aw’ ‘~/tmp/scratch/RtmpSkX6nI’
‘~/tmp/scratch/RtmpSp2SHX’ ‘~/tmp/scratch/RtmpSpDKM0’
‘~/tmp/scratch/RtmpV5PIoN’ ‘~/tmp/scratch/RtmpVpIFOp’
‘~/tmp/scratch/RtmpVuLqw6’ ‘~/tmp/scratch/RtmpWKPe5N’
‘~/tmp/scratch/RtmpWkBjvr’ ‘~/tmp/scratch/RtmpXFO6vS’
‘~/tmp/scratch/RtmpXVGAv9’ ‘~/tmp/scratch/RtmpXnOJU9’
‘~/tmp/scratch/RtmpY08oN0’ ‘~/tmp/scratch/RtmpYGL5ej’
‘~/tmp/scratch/RtmpYGXJs9’ ‘~/tmp/scratch/RtmpYWY0SF’
‘~/tmp/scratch/RtmpYyLIkq’ ‘~/tmp/scratch/RtmpZ9VxMG’
‘~/tmp/scratch/RtmpZHNezv’ ‘~/tmp/scratch/RtmpZWRohr’
‘~/tmp/scratch/RtmpZfHNQo’ ‘~/tmp/scratch/RtmpZg7c8N’
‘~/tmp/scratch/RtmpZmJmay’ ‘~/tmp/scratch/RtmpZrsWMQ’
‘~/tmp/scratch/RtmpZuk5aL’ ‘~/tmp/scratch/Rtmpa7xs2a’
‘~/tmp/scratch/RtmpapIGX9’ ‘~/tmp/scratch/RtmpazTmyy’
‘~/tmp/scratch/Rtmpb65QGw’ ‘~/tmp/scratch/Rtmpb7cgBj’
‘~/tmp/scratch/RtmpbEBpLn’ ‘~/tmp/scratch/RtmpbQZJTG’
‘~/tmp/scratch/RtmpbTVnVf’ ‘~/tmp/scratch/RtmpbWb9Tf’
‘~/tmp/scratch/RtmpcMrXBr’ ‘~/tmp/scratch/RtmpcPr3C6’
‘~/tmp/scratch/Rtmpd7e1ji’ ‘~/tmp/scratch/RtmpdJ8wYl’
‘~/tmp/scratch/RtmpdlxEBb’ ‘~/tmp/scratch/RtmpdmS7HX’
‘~/tmp/scratch/RtmpdtukC4’ ‘~/tmp/scratch/Rtmpe8LGfH’
‘~/tmp/scratch/RtmpebIA0n’ ‘~/tmp/scratch/RtmpeqWPJ8’
‘~/tmp/scratch/Rtmpet0S5E’ ‘~/tmp/scratch/RtmpfUSAyi’
‘~/tmp/scratch/RtmpfuTDky’ ‘~/tmp/scratch/RtmpgZTiWL’
‘~/tmp/scratch/RtmpgbGP5g’ ‘~/tmp/scratch/Rtmph8mOi8’
‘~/tmp/scratch/RtmphAsNS5’ ‘~/tmp/scratch/RtmphPAPoA’
‘~/tmp/scratch/RtmphZjFjf’ ‘~/tmp/scratch/Rtmphjr1yB’
‘~/tmp/scratch/RtmphmGB2h’ ‘~/tmp/scratch/RtmphnWRMw’
‘~/tmp/scratch/RtmpiCULZU’ ‘~/tmp/scratch/RtmpibiD33’
‘~/tmp/scratch/RtmpjW7XfL’ ‘~/tmp/scratch/RtmpkJvMTd’
‘~/tmp/scratch/RtmpkfnK86’ ‘~/tmp/scratch/Rtmpkq9WYy’
‘~/tmp/scratch/Rtmpl0Ojuv’ ‘~/tmp/scratch/RtmplnoyqA’
‘~/tmp/scratch/RtmplweeIV’ ‘~/tmp/scratch/RtmpmO6CVR’
‘~/tmp/scratch/Rtmpmr8TkT’ ‘~/tmp/scratch/Rtmpn9bSRY’
‘~/tmp/scratch/RtmpoPcYcA’ ‘~/tmp/scratch/RtmpoXxQpS’
‘~/tmp/scratch/Rtmpos0fif’ ‘~/tmp/scratch/RtmpouEj9s’
‘~/tmp/scratch/RtmpozSBfD’ ‘~/tmp/scratch/RtmppW2A8M’
‘~/tmp/scratch/RtmpqDFQ6h’ ‘~/tmp/scratch/RtmprIoUD5’
‘~/tmp/scratch/RtmprjHdMi’ ‘~/tmp/scratch/Rtmps8IH0i’
‘~/tmp/scratch/RtmpsHmEhd’ ‘~/tmp/scratch/Rtmpt0BPIE’
‘~/tmp/scratch/Rtmpt8XbK6’ ‘~/tmp/scratch/RtmpuJM8FU’
‘~/tmp/scratch/RtmpuThcZ0’ ‘~/tmp/scratch/RtmpugpFMV’
‘~/tmp/scratch/Rtmpuubt85’ ‘~/tmp/scratch/RtmpvG10u8’
‘~/tmp/scratch/RtmpvR6NLJ’ ‘~/tmp/scratch/RtmpvXgtuz’
‘~/tmp/scratch/Rtmpvmcm4g’ ‘~/tmp/scratch/RtmpxEO8Lw’
‘~/tmp/scratch/RtmpyM4VBR’ ‘~/tmp/scratch/RtmpyPTaDf’
‘~/tmp/scratch/RtmpyrRBfn’ ‘~/tmp/scratch/RtmpzTylRy’
‘~/tmp/scratch/xvfb-run.0kOsKf’ ‘~/tmp/scratch/xvfb-run.1unsHZ’
‘~/tmp/scratch/xvfb-run.4AoLli’ ‘~/tmp/scratch/xvfb-run.4U87PK’
‘~/tmp/scratch/xvfb-run.4YC29F’ ‘~/tmp/scratch/xvfb-run.6PZHpG’
‘~/tmp/scratch/xvfb-run.77k7MX’ ‘~/tmp/scratch/xvfb-run.82VmCo’
‘~/tmp/scratch/xvfb-run.9JpoOv’ ‘~/tmp/scratch/xvfb-run.9cCTWk’
‘~/tmp/scratch/xvfb-run.AA2u8m’ ‘~/tmp/scratch/xvfb-run.BKKKaj’
‘~/tmp/scratch/xvfb-run.DE6bFJ’ ‘~/tmp/scratch/xvfb-run.EKk2UZ’
‘~/tmp/scratch/xvfb-run.FczGPE’ ‘~/tmp/scratch/xvfb-run.GC81iP’
‘~/tmp/scratch/xvfb-run.GrvBsF’ ‘~/tmp/scratch/xvfb-run.IbHXsR’
‘~/tmp/scratch/xvfb-run.In7wKq’ ‘~/tmp/scratch/xvfb-run.JBS9Af’
‘~/tmp/scratch/xvfb-run.JFreL7’ ‘~/tmp/scratch/xvfb-run.K7j9sW’
‘~/tmp/scratch/xvfb-run.Kk1RMp’ ‘~/tmp/scratch/xvfb-run.Lbq7n1’
‘~/tmp/scratch/xvfb-run.Ls44bC’ ‘~/tmp/scratch/xvfb-run.MHN4iR’
‘~/tmp/scratch/xvfb-run.MSH4l0’ ‘~/tmp/scratch/xvfb-run.NFhDdc’
‘~/tmp/scratch/xvfb-run.NO4ptr’ ‘~/tmp/scratch/xvfb-run.Obj9nB’
‘~/tmp/scratch/xvfb-run.P2tEEt’ ‘~/tmp/scratch/xvfb-run.PZjDPU’
‘~/tmp/scratch/xvfb-run.PeEU4e’ ‘~/tmp/scratch/xvfb-run.PgnI3j’
‘~/tmp/scratch/xvfb-run.PlTbjk’ ‘~/tmp/scratch/xvfb-run.Q7StiK’
‘~/tmp/scratch/xvfb-run.Q8aSCO’ ‘~/tmp/scratch/xvfb-run.QnCihX’
‘~/tmp/scratch/xvfb-run.SsEgML’ ‘~/tmp/scratch/xvfb-run.TOoEum’
‘~/tmp/scratch/xvfb-run.Tut0LV’ ‘~/tmp/scratch/xvfb-run.U5iEIL’
‘~/tmp/scratch/xvfb-run.UwyDLn’ ‘~/tmp/scratch/xvfb-run.VMst5d’
‘~/tmp/scratch/xvfb-run.VWvLHK’ ‘~/tmp/scratch/xvfb-run.XOjueb’
‘~/tmp/scratch/xvfb-run.Xgwzfi’ ‘~/tmp/scratch/xvfb-run.YLAf29’
‘~/tmp/scratch/xvfb-run.YqooaO’ ‘~/tmp/scratch/xvfb-run.aVcxFE’
‘~/tmp/scratch/xvfb-run.aXUAKI’ ‘~/tmp/scratch/xvfb-run.aeZfn5’
‘~/tmp/scratch/xvfb-run.c0UGz7’ ‘~/tmp/scratch/xvfb-run.f3Ygte’
‘~/tmp/scratch/xvfb-run.fQAIX0’ ‘~/tmp/scratch/xvfb-run.hCWT9G’
‘~/tmp/scratch/xvfb-run.hduzIu’ ‘~/tmp/scratch/xvfb-run.kMDfTh’
‘~/tmp/scratch/xvfb-run.ktKoy4’ ‘~/tmp/scratch/xvfb-run.mWpq0n’
‘~/tmp/scratch/xvfb-run.mkycA8’ ‘~/tmp/scratch/xvfb-run.npQ47y’
‘~/tmp/scratch/xvfb-run.oDeosY’ ‘~/tmp/scratch/xvfb-run.oEKUuj’
‘~/tmp/scratch/xvfb-run.pRaUFY’ ‘~/tmp/scratch/xvfb-run.qGcjKb’
‘~/tmp/scratch/xvfb-run.rSZHCN’ ‘~/tmp/scratch/xvfb-run.uLQtdP’
‘~/tmp/scratch/xvfb-run.uhn1Q8’ ‘~/tmp/scratch/xvfb-run.uzVxHL’
‘~/tmp/scratch/xvfb-run.vZWRyt’ ‘~/tmp/scratch/xvfb-run.wETpqB’
‘~/tmp/scratch/xvfb-run.wWJ2IA’ ‘~/tmp/scratch/xvfb-run.xbQHBI’
‘~/tmp/scratch/xvfb-run.xwDMKM’ ‘~/tmp/scratch/xvfb-run.yIBobo’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.10
Check: examples
Result: ERROR
Running examples in ‘SATS-Ex.R’ failed
The error most likely occurred in:
> ### Name: GenerateLMatrix
> ### Title: Generate an L Matrix
> ### Aliases: GenerateLMatrix
>
> ### ** Examples
>
> data(SimData, package="SATS")
>
> Panel_context <- GeneratePanelSize(genomic_information=SimData$PanelEx, Class="SBS",
+ SBS_order="COSMIC")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’
Error in myGetSeq(ref.genome, Seq_assay_GRanges) :
Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Calls: GeneratePanelSize -> GeneratePanelSize_SBS -> myGetSeq
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64