Last updated on 2026-08-01 05:55:25 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 44.61 | 400.17 | 444.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 31.55 | 276.42 | 307.97 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 76.00 | 627.08 | 703.08 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 33.00 | 278.80 | 311.80 | OK | |
| r-devel-windows-x86_64 | 1.0.1 | 46.00 | 335.00 | 381.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 41.42 | 385.95 | 427.37 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 43.02 | 388.38 | 431.40 | OK | |
| r-release-macos-arm64 | 1.0.1 | 9.00 | 79.00 | 88.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.1 | 28.00 | 245.00 | 273.00 | ERROR | |
| r-release-windows-x86_64 | 1.0.1 | 47.00 | 336.00 | 383.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 8.00 | 76.00 | 84.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.1 | 28.00 | 265.00 | 293.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.1 | 72.00 | 457.00 | 529.00 | OK |
Version: 1.0.1
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0652tk’ ‘~/tmp/scratch/Rtmp0HHc7P’
‘~/tmp/scratch/Rtmp0Sk6mC’ ‘~/tmp/scratch/Rtmp0Ucyr7’
‘~/tmp/scratch/Rtmp0lO8DP’ ‘~/tmp/scratch/Rtmp0prUyd’
‘~/tmp/scratch/Rtmp0udrRT’ ‘~/tmp/scratch/Rtmp0zx7o8’
‘~/tmp/scratch/Rtmp15Tncw’ ‘~/tmp/scratch/Rtmp1UoBrU’
‘~/tmp/scratch/Rtmp1e9znm’ ‘~/tmp/scratch/Rtmp1xWQRh’
‘~/tmp/scratch/Rtmp27lGZR’ ‘~/tmp/scratch/Rtmp2He5fK’
‘~/tmp/scratch/Rtmp2SXiYD’ ‘~/tmp/scratch/Rtmp42C3PS’
‘~/tmp/scratch/Rtmp4UHo5D’ ‘~/tmp/scratch/Rtmp4etnC8’
‘~/tmp/scratch/Rtmp6Va5rQ’ ‘~/tmp/scratch/Rtmp6p51dq’
‘~/tmp/scratch/Rtmp8KmfOr’ ‘~/tmp/scratch/Rtmp8eI5Zh’
‘~/tmp/scratch/Rtmp8jndLD’ ‘~/tmp/scratch/Rtmp8vfHA4’
‘~/tmp/scratch/Rtmp8zfYFq’ ‘~/tmp/scratch/Rtmp9EnKGy’
‘~/tmp/scratch/Rtmp9GzDCo’ ‘~/tmp/scratch/Rtmp9LuwnZ’
‘~/tmp/scratch/Rtmp9SKaYN’ ‘~/tmp/scratch/Rtmp9cQjGu’
‘~/tmp/scratch/RtmpBTEmGm’ ‘~/tmp/scratch/RtmpBZ6FWX’
‘~/tmp/scratch/RtmpBraNvq’ ‘~/tmp/scratch/RtmpC9WIFE’
‘~/tmp/scratch/RtmpDipMn4’ ‘~/tmp/scratch/RtmpDtfOm0’
‘~/tmp/scratch/RtmpFC3LRi’ ‘~/tmp/scratch/RtmpFpjiNj’
‘~/tmp/scratch/RtmpFqG0ST’ ‘~/tmp/scratch/RtmpGDiIHQ’
‘~/tmp/scratch/RtmpGPQbZC’ ‘~/tmp/scratch/RtmpGhLGCq’
‘~/tmp/scratch/RtmpGs4RNZ’ ‘~/tmp/scratch/RtmpGurQ2N’
‘~/tmp/scratch/RtmpH0TAe2’ ‘~/tmp/scratch/RtmpH1KIFT’
‘~/tmp/scratch/RtmpH7hwGq’ ‘~/tmp/scratch/RtmpHnG8uw’
‘~/tmp/scratch/RtmpI04bUh’ ‘~/tmp/scratch/RtmpI7eXgd’
‘~/tmp/scratch/RtmpIJMtpj’ ‘~/tmp/scratch/RtmpINqzI9’
‘~/tmp/scratch/RtmpIP7BV6’ ‘~/tmp/scratch/RtmpIu9ntH’
‘~/tmp/scratch/RtmpIyMk6N’ ‘~/tmp/scratch/RtmpJ8QKi6’
‘~/tmp/scratch/RtmpJUwz2F’ ‘~/tmp/scratch/RtmpJWm6EK’
‘~/tmp/scratch/RtmpJzXN3x’ ‘~/tmp/scratch/RtmpK20kQj’
‘~/tmp/scratch/RtmpLQeXB8’ ‘~/tmp/scratch/RtmpLSDLrs’
‘~/tmp/scratch/RtmpLU0J1R’ ‘~/tmp/scratch/RtmpLjhYZZ’
‘~/tmp/scratch/RtmpLoHZRV’ ‘~/tmp/scratch/RtmpM2RTXS’
‘~/tmp/scratch/RtmpNNZVFj’ ‘~/tmp/scratch/RtmpNZuzSU’
‘~/tmp/scratch/RtmpNcjcN3’ ‘~/tmp/scratch/RtmpNleQcC’
‘~/tmp/scratch/RtmpOHYtPb’ ‘~/tmp/scratch/RtmpOXz2S4’
‘~/tmp/scratch/RtmpOgrpgy’ ‘~/tmp/scratch/RtmpPjULnK’
‘~/tmp/scratch/RtmpQ68WCN’ ‘~/tmp/scratch/RtmpQMLYAS’
‘~/tmp/scratch/RtmpQYbMkE’ ‘~/tmp/scratch/RtmpQdBicm’
‘~/tmp/scratch/RtmpSR2ydF’ ‘~/tmp/scratch/RtmpSjdnOO’
‘~/tmp/scratch/RtmpStCp4g’ ‘~/tmp/scratch/RtmpT3cpmb’
‘~/tmp/scratch/RtmpT4yCHj’ ‘~/tmp/scratch/RtmpTpg3uC’
‘~/tmp/scratch/RtmpTuVlNV’ ‘~/tmp/scratch/RtmpU3nYXB’
‘~/tmp/scratch/RtmpUPBbPh’ ‘~/tmp/scratch/RtmpUQGnO8’
‘~/tmp/scratch/RtmpUbn9Q1’ ‘~/tmp/scratch/RtmpUcA8yK’
‘~/tmp/scratch/RtmpUcpIAq’ ‘~/tmp/scratch/RtmpUk8OL6’
‘~/tmp/scratch/RtmpV6BIWb’ ‘~/tmp/scratch/RtmpVDpWob’
‘~/tmp/scratch/RtmpVm4T0G’ ‘~/tmp/scratch/RtmpVz3onK’
‘~/tmp/scratch/RtmpW4QN8e’ ‘~/tmp/scratch/RtmpWAOjf2’
‘~/tmp/scratch/RtmpWK3Jej’ ‘~/tmp/scratch/RtmpX5rc3S’
‘~/tmp/scratch/RtmpXDdtBO’ ‘~/tmp/scratch/RtmpXlNj1n’
‘~/tmp/scratch/RtmpZjMXYo’ ‘~/tmp/scratch/RtmpayKOo9’
‘~/tmp/scratch/RtmpbjDprA’ ‘~/tmp/scratch/RtmpbkabrT’
‘~/tmp/scratch/RtmpbuDo6A’ ‘~/tmp/scratch/Rtmpc3Gsr8’
‘~/tmp/scratch/Rtmpc7dOKD’ ‘~/tmp/scratch/Rtmpc8Dzrp’
‘~/tmp/scratch/Rtmpd5alcY’ ‘~/tmp/scratch/Rtmpd9F9Sf’
‘~/tmp/scratch/RtmpdDCace’ ‘~/tmp/scratch/RtmpdYF3S1’
‘~/tmp/scratch/RtmpdhaJq9’ ‘~/tmp/scratch/RtmperUH9B’
‘~/tmp/scratch/Rtmpf5QRCJ’ ‘~/tmp/scratch/RtmpfBbFsa’
‘~/tmp/scratch/RtmpfiPtgn’ ‘~/tmp/scratch/RtmpgNrbgZ’
‘~/tmp/scratch/RtmpgU0Hie’ ‘~/tmp/scratch/RtmpgUeLLi’
‘~/tmp/scratch/RtmpgfYOSm’ ‘~/tmp/scratch/RtmpgvW9YJ’
‘~/tmp/scratch/RtmpiJlLe8’ ‘~/tmp/scratch/RtmpitfLgx’
‘~/tmp/scratch/RtmpizIdKL’ ‘~/tmp/scratch/Rtmpj6p3pX’
‘~/tmp/scratch/RtmpjOXMX3’ ‘~/tmp/scratch/RtmpjpxqDc’
‘~/tmp/scratch/Rtmpjqj8PC’ ‘~/tmp/scratch/RtmpjvRdFp’
‘~/tmp/scratch/RtmplOlCpp’ ‘~/tmp/scratch/RtmpmHZh2v’
‘~/tmp/scratch/RtmpnSj3jh’ ‘~/tmp/scratch/RtmpnumEu0’
‘~/tmp/scratch/RtmpnyrNy3’ ‘~/tmp/scratch/Rtmpon7vdE’
‘~/tmp/scratch/RtmppA2FWz’ ‘~/tmp/scratch/RtmppFFmlq’
‘~/tmp/scratch/RtmppO0pr0’ ‘~/tmp/scratch/RtmppXAqtE’
‘~/tmp/scratch/RtmpqoKpB5’ ‘~/tmp/scratch/Rtmprv4scX’
‘~/tmp/scratch/Rtmpry7buC’ ‘~/tmp/scratch/Rtmps1n9JG’
‘~/tmp/scratch/RtmpsLh4pK’ ‘~/tmp/scratch/RtmpsjgTHn’
‘~/tmp/scratch/RtmptMGM61’ ‘~/tmp/scratch/RtmptMbev4’
‘~/tmp/scratch/RtmptNQb1C’ ‘~/tmp/scratch/Rtmptb3XAK’
‘~/tmp/scratch/RtmptixmY0’ ‘~/tmp/scratch/Rtmptm1Igx’
‘~/tmp/scratch/Rtmpu3jdbx’ ‘~/tmp/scratch/RtmpuNzoip’
‘~/tmp/scratch/Rtmpukeg9k’ ‘~/tmp/scratch/RtmpusOBq8’
‘~/tmp/scratch/RtmpvDxXdD’ ‘~/tmp/scratch/RtmpwIINGa’
‘~/tmp/scratch/RtmpwzSdwR’ ‘~/tmp/scratch/RtmpwzyNVx’
‘~/tmp/scratch/Rtmpxj5sFQ’ ‘~/tmp/scratch/Rtmpy29i7u’
‘~/tmp/scratch/RtmpyT1Udw’ ‘~/tmp/scratch/Rtmpz5VVXc’
‘~/tmp/scratch/RtmpzTamgS’ ‘~/tmp/scratch/RtmpzfyBPa’
‘~/tmp/scratch/ccFDph4f.s’ ‘~/tmp/scratch/xvfb-run.10PCgq’
‘~/tmp/scratch/xvfb-run.2E51sI’ ‘~/tmp/scratch/xvfb-run.2MIqRT’
‘~/tmp/scratch/xvfb-run.3Zb8ee’ ‘~/tmp/scratch/xvfb-run.41cgHi’
‘~/tmp/scratch/xvfb-run.4TIa2r’ ‘~/tmp/scratch/xvfb-run.67f1x5’
‘~/tmp/scratch/xvfb-run.6brziq’ ‘~/tmp/scratch/xvfb-run.7E4vZW’
‘~/tmp/scratch/xvfb-run.8W6p1T’ ‘~/tmp/scratch/xvfb-run.8mcTpU’
‘~/tmp/scratch/xvfb-run.945Lll’ ‘~/tmp/scratch/xvfb-run.9cXSES’
‘~/tmp/scratch/xvfb-run.APpgeG’ ‘~/tmp/scratch/xvfb-run.AWxkP0’
‘~/tmp/scratch/xvfb-run.Aw5BjW’ ‘~/tmp/scratch/xvfb-run.BEuxV5’
‘~/tmp/scratch/xvfb-run.CCtQ47’ ‘~/tmp/scratch/xvfb-run.DS4CLQ’
‘~/tmp/scratch/xvfb-run.EUJ6vg’ ‘~/tmp/scratch/xvfb-run.EeOU1p’
‘~/tmp/scratch/xvfb-run.FzttkH’ ‘~/tmp/scratch/xvfb-run.G30MeC’
‘~/tmp/scratch/xvfb-run.GRbIzl’ ‘~/tmp/scratch/xvfb-run.JCQCLw’
‘~/tmp/scratch/xvfb-run.Jl1DqT’ ‘~/tmp/scratch/xvfb-run.LKhMhF’
‘~/tmp/scratch/xvfb-run.LuJPOc’ ‘~/tmp/scratch/xvfb-run.M91JAb’
‘~/tmp/scratch/xvfb-run.NioxOl’ ‘~/tmp/scratch/xvfb-run.NlH5g5’
‘~/tmp/scratch/xvfb-run.ORFLEF’ ‘~/tmp/scratch/xvfb-run.QGHido’
‘~/tmp/scratch/xvfb-run.Qk1EuM’ ‘~/tmp/scratch/xvfb-run.RLBPa4’
‘~/tmp/scratch/xvfb-run.RtaldY’ ‘~/tmp/scratch/xvfb-run.RxNQKL’
‘~/tmp/scratch/xvfb-run.TPgrwd’ ‘~/tmp/scratch/xvfb-run.To8iwd’
‘~/tmp/scratch/xvfb-run.VZNzXn’ ‘~/tmp/scratch/xvfb-run.VdDDdU’
‘~/tmp/scratch/xvfb-run.WO2fl0’ ‘~/tmp/scratch/xvfb-run.cJ4hai’
‘~/tmp/scratch/xvfb-run.cKSLEZ’ ‘~/tmp/scratch/xvfb-run.dw1b59’
‘~/tmp/scratch/xvfb-run.fJA7yZ’ ‘~/tmp/scratch/xvfb-run.g44bGd’
‘~/tmp/scratch/xvfb-run.gEDNm2’ ‘~/tmp/scratch/xvfb-run.gEaLcp’
‘~/tmp/scratch/xvfb-run.hrMsxV’ ‘~/tmp/scratch/xvfb-run.hu1HVY’
‘~/tmp/scratch/xvfb-run.i1rJaz’ ‘~/tmp/scratch/xvfb-run.iHAcys’
‘~/tmp/scratch/xvfb-run.ivwbDj’ ‘~/tmp/scratch/xvfb-run.j9iY0k’
‘~/tmp/scratch/xvfb-run.jVd1xn’ ‘~/tmp/scratch/xvfb-run.kRkE25’
‘~/tmp/scratch/xvfb-run.kab3vH’ ‘~/tmp/scratch/xvfb-run.l2RBmW’
‘~/tmp/scratch/xvfb-run.lLAD38’ ‘~/tmp/scratch/xvfb-run.lMwSsy’
‘~/tmp/scratch/xvfb-run.lUDyXA’ ‘~/tmp/scratch/xvfb-run.mcwcT8’
‘~/tmp/scratch/xvfb-run.mxN53u’ ‘~/tmp/scratch/xvfb-run.oCgxTg’
‘~/tmp/scratch/xvfb-run.qWyfBB’ ‘~/tmp/scratch/xvfb-run.sARSAr’
‘~/tmp/scratch/xvfb-run.ski2LL’ ‘~/tmp/scratch/xvfb-run.t11Z3g’
‘~/tmp/scratch/xvfb-run.takQ3k’ ‘~/tmp/scratch/xvfb-run.vI1blZ’
‘~/tmp/scratch/xvfb-run.wG1YGU’ ‘~/tmp/scratch/xvfb-run.wsoYfd’
‘~/tmp/scratch/xvfb-run.x7ks6I’ ‘~/tmp/scratch/xvfb-run.xezGIq’
‘~/tmp/scratch/xvfb-run.yXg7gr’ ‘~/tmp/scratch/xvfb-run.yrj1q9’
‘~/tmp/scratch/xvfb-run.z9W9JR’ ‘~/tmp/scratch/xvfb-run.zp0vOi’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
2026-08-01 15:25:19.396 R[91890:476445] XType: Using static font registry.
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64