be824449337ecf1e62e9b509a464b7fa *DESCRIPTION
4c6537ed610047255e96fffde70201b4 *NAMESPACE
25923c63b8a46e4a047f4c0bb0a3dabc *NEWS.md
84f93940cdabbea42725ea287cc0fbf2 *R/bifrost_search-methods.R
a029c350102368a10fa50512f7857293 *R/plot_ic_acceptance_matrix.R
4ade13fd9a783cff096639910f5e4ac7 *R/plotting-utils.R
b50dfb491dc1c135311d2edcc2474aea *R/searchOptimalConfiguration.R
02de0b68f1736b5f9c2d2d83089d9b4d *R/utils.R
3320cff34bdadf45b1be4fe2059546da *README.md
85781fee1f45dcd82975081348bc983b *build/vignette.rds
3a7298cbe377a597bdf224d39029825c *inst/CITATION
df7309d1e66ada62a3661b47fa5bb4ce *inst/WORDLIST
f7038babcce3774ea7478b0ae5d66e7f *inst/doc/jaw-shape-vignette.R
083857324770babf01f817a4ac35a9be *inst/doc/jaw-shape-vignette.Rmd
4155cf32995ab88d1bff4aee5f7a21c3 *inst/doc/jaw-shape-vignette.html
b0466b9e94539ae00108dac93840b3e6 *inst/extdata/jaw-shape/jaws_coords.RDS
dbc446aabc8ddf09a7a992a7c64690cc *inst/extdata/jaw-shape/mrbayes_prune_tree.RDS
daf64ae4f0a3a6599db3e68a4b2da619 *man/figures/logo.png
60d6f6cad7d7e21f29aa8fb0c05c0b87 *man/generateViridisColorScale.Rd
01210a5cb93638a56125152624553219 *man/plot_ic_acceptance_matrix.Rd
0ec512944f9773471895b8fa833df262 *man/print.bifrost_search.Rd
fd05de4cc93f657f11d9c57355c343fe *man/searchOptimalConfiguration.Rd
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
007bca48a424822ce9115754de927da1 *tests/testthat.R
98b23a25395f16b19bec77799baeef12 *tests/testthat/fixtures/simdata.RDS
5be97f0e11004dedfe7da26b1e26a1b4 *tests/testthat/test-addShiftToModel.R
075beaa34a47c53ccb0227056d6021c5 *tests/testthat/test-addShiftToModel_alt.R
e64add15d651083abb29e4709df540fd *tests/testthat/test-extractRegimeVCVs.R
a26164eeb3cd40f545baf658dab93f43 *tests/testthat/test-fitMvglsAndExtractBIC.formula.R
3b34d4d96d4dbf869f97bf5ffe9732c4 *tests/testthat/test-fitMvglsAndExtractGIC.formula.r
0f2d1cfdea17b818c601b3d154d095ef *tests/testthat/test-generatePaintedTrees.R
d9908c60fa7821207d0be53b57c5ba14 *tests/testthat/test-generateViridisColorScale.R
5e23896b86fc8acf405b262c9f8b24f0 *tests/testthat/test-getDescendants.R
ca0226c7e70a3d12300418e976f0d62e *tests/testthat/test-mvgls-functions.R
0c7a674e77aabd1dc509cc1324df8b94 *tests/testthat/test-paintSubTree_mod.R
2d4f40424bad5035b182ec412d535511 *tests/testthat/test-paintSubTree_removeShift.R
04ccac3929a3cf95578971278e1b0b45 *tests/testthat/test-plot_ic_acceptance_matrix.R
bf3e161a1e0f8515a1fc576e5af74c4f *tests/testthat/test-print-bifrost_search.R
2f25baa7c3d662f210a0621c855cdf6d *tests/testthat/test-removeShiftFromTree.R
93846727259fe082c94e1c5ce7f105f0 *tests/testthat/test-searchOptimalConfiguration.R
ebf5d96969a3a8fadc37744524ebac8b *tests/testthat/test-whichShifts.R
083857324770babf01f817a4ac35a9be *vignettes/jaw-shape-vignette.Rmd
e73bcc6ad6a292813fab8796beea647c *vignettes/jaw-shape/Gogosardina_coatesi_jaw_customcrop.png
95e2ec69066ca23acceb1392c12a2b1d *vignettes/jaw-shape/IC_decay.png
fa7964cc4a46330663eee7c0de2378c3 *vignettes/jaw-shape/branch_rates.png
a61b07fb4eb655df5c00fb2acb39aebb *vignettes/jaw-shape/cor_heatmap.png
59d019efc23f0eeb987965fb0daec2aa *vignettes/jaw-shape/gr1_lrg.jpg
7dd830a14cf0f843953a39cfffacff15 *vignettes/jaw-shape/gr1_lrg_png24.png
