3ad33a89ada84870d021bf8d9f5ab3d5 *DESCRIPTION
bd0245b9e62db97e4523bfa83bb2c1b7 *NAMESPACE
826352f0c047a4f94c143dede2d1fe66 *R/E_step.R
e41de56683d052f5901b4847a730152b *R/E_step_final.R
08cb48dc21565189dee1b4b4f5e4eb79 *R/E_step_final_FA.R
81b2d02f27c710285e5210d25551c796 *R/M_step.R
ba0037799d97d43d70e4a33716032503 *R/M_step_FA.R
dcce2ee87df63f334da3025c10749ab5 *R/RcppExports.R
76896fec80f05ed8a4ca1cc2ca7cc731 *R/SetClassDefn.R
4c93ce4d3fff8b58c32c339e6ab216b2 *R/basal_dataset.R
9eb924816915af44f60cc1cb4a6eb10e *R/checks.R
8a3dafdac37b57c798e5ed9b5c7943e9 *R/control_options.R
68f5c24135a2c2241d79d3e0a369c118 *R/estimate_r.R
850ac6e8ccead197d520ae3f0fb4f770 *R/family_export.R
5f7a9430709c5c7990306aee10a975b8 *R/fit_dat.R
0b5e5ba94274dde205a5c18c6bd84182 *R/fit_dat_FA.R
5401abf36ca28551b993409e7b91c4be *R/formula_data_edits.R
e7c3b0f2afed5053e18e624fc8109b24 *R/glmmPen.R
9a08f4756d53fa20e2aef970389e377e *R/glmmPen_FA.R
d9220c640655098527ce7861e27ffa6f *R/logLik_Pajor.R
35e3870ae74291c139b46c61cb0a58f3 *R/logLik_Pajor_FA.R
c07f31b4ade2499c61437a07dfc27e5c *R/methods.R
0bd6ab2041f870d7b2dcddcdbf2da167 *R/prescreen.R
e9502d3b8a2296095dc3ed8471590e42 *R/prescreen_FA.R
91d6bacebd47e5ec7de58c186e882e3f *R/sample_mc_functions.R
04575f82ca3fcfa3e7ac6a584dcf1077 *R/select_tune.R
5b36fb76c277b71d73a742aefeff75fa *R/select_tune_FA.R
c1be53dd45199519e6a9f751ca553bfa *R/sim_generation.R
604ad4e09e2cc44c30b15e2f3ef27bfc *R/sim_generation_FA.R
e96e4df78882b52776d9a5f8de0a36c4 *R/stanmodels.R
7cd9672bdaa467baca9ba99c7034144a *R/var_start_init.R
c06b4593d1a3b496f92333671e032ede *README.md
1cc60bdd8610449d30184e0bb374bf46 *configure
363506993327ae3b7de4216fa3a1aa2b *configure.win
3240102badcd0213ee167e2ea2590852 *data/basal.RData
15b6ff4cd8e07508d48fdcfb9d66bf6e *inst/glmmPen_1.5.2.11.pdf
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
800c7ab7bb8b7c1f06eb2ec53bbd4ebd *inst/stan/binomial_logit_model.stan
edfb1930440fdb7d4b40fbcf94936d08 *inst/stan/gaussian_identity_model.stan
0a69072d1af781bf21b9b4abb3ed1a29 *inst/stan/include/license.stan
f6ac7e125e3f0a80db62ec0012502116 *inst/stan/poisson_log_model.stan
482713edf839055c1578d29b6e9ca03c *inst/update.R
5ebc70fecd5d6ddddee783f662e14aa3 *man/LambdaSeq.Rd
a1022035fafd2dbbae344084283ed179 *man/adaptControl.Rd
142c6287d5bf77e59ef6fd6aa3230dd5 *man/basal.Rd
88181b636a46e1999f2810b5824b566b *man/coxphControl.Rd
20055672f8f600a186ba9e8f286653a3 *man/glFormula_edit.Rd
b58b862aafda936740a12588bf692be9 *man/glmm.Rd
c0a832de62fe187627ee4f68d468d3de *man/glmmPen.Rd
9f6d4c82e5afba0d73a586adc32f35ad *man/glmmPen_FA.Rd
2c0ec17c395acb1fcd97298a396b76a8 *man/glmm_FA.Rd
7bec561f360901f45db4fe82495f9065 *man/lambdaControl.Rd
f45497ecce6fcbe1230f50cc4997505c *man/optimControl.Rd
83a9fe445d121966e35c0e8b60760d50 *man/pglmmObj-class.Rd
3ef86a4ab78c8698652cc72fa15ed092 *man/plot_mcmc.Rd
4b3c2eb9202bcf66db69845f8a169523 *man/rControl.Rd
52990c575852685178bf0f2a66e4d3ec *man/sim.data.Rd
8c82b0ac1ebb3a48fbdb20243ead5ae2 *src/Makevars
7264e0ccca7bbdf1e272c7e297b2903b *src/Makevars.win
37da9529b52d49a89466f996f5c933c8 *src/RcppExports.cpp
1a7e2c01c47cf423e52aa04382bcf7ad *src/coord_descent.cpp
ddd9be0be2c23fc6e464e51fb1c005c6 *src/grp_CD_XZ_FA_step.cpp
0ee98a4892d19992a0231d9ba39987d1 *src/grp_CD_XZ_step.cpp
f904296acda1b863e5df382ab5d54f68 *src/penalties.cpp
3c77965c41a0ded4474793c577534605 *src/pglm_fit.cpp
7b6b7ab59186d8daddd5e427c218306c *src/sample_mc_inner_gibbs.cpp
e415c7572e99dad15ce70561c956825f *src/sample_mc_random_walk.cpp
bce917847550119a0dbf636d6b1a12cf *src/stanExports_binomial_logit_model.cc
cdbe112733b864ee0d0e52f9f6a8680b *src/stanExports_binomial_logit_model.h
042b0fe31d1743ba7023d7f6e148b2c9 *src/stanExports_gaussian_identity_model.cc
c15a7d33ac6bce677cde21947bdc2a9f *src/stanExports_gaussian_identity_model.h
1b7e853ff8b69ee6120af6a5ce46c04a *src/stanExports_poisson_log_model.cc
810e7d9a198e077431d2b944a54f6f80 *src/stanExports_poisson_log_model.h
fbad34bcabac7f70303796022cc6e6f5 *src/utility_CD.h
ddcea2487a3ad39e37546a47cf24a0ac *src/utility_FA.cpp
e7103240f271d7a66d0317e71a2cf654 *src/utility_glm.cpp
d21b973817f9707ff4b788586b0333a8 *src/utility_glm.h
a3e71f92978b8db5afaece07b6a0fa16 *src/utility_grpCD.cpp
adac520570a035d077950c45146b4fed *tests/testthat.R
de69181caee6cea89f9fa6562a6ed00c *tests/testthat/test-args-input.R
97da9b0409bb54f649f592bdd50748df *tests/testthat/test-data-input.R
