413c21fa8e8e55d5e780424728f23544 *DESCRIPTION
e5dc2127eef5129513ece05e2a32c7cd *NAMESPACE
91acc9e140df19db93b20117e2be5b7d *NEWS.md
0c602625a1c5d1758db81f96869bab19 *R/00-setup_data.R
e1a9ba316122a39dd2cf303f5577839e *R/01-qc.R
3e82b423b8a77bb4ff6fc929ee9e2454 *R/02-gimap_filter.R
2d55a2751393295428b731cf0f6637c9 *R/03-annotate.R
d7975266e739ea7d502729c8dc01fc07 *R/04-normalize.R
2a6002f2e0207c88c807b2fc509ccd47 *R/05-calculate_gi.R
bed3c8ef24f5fee9e10698e37d6496bb *R/plots-gi.R
e8b2a8416bfbe9f2f7ecb25d27e91329 *R/plots-norm.R
e5f4833e752b289b20d864cc9ed6ce70 *R/plots-qc.R
5714874cb1df71b1eb75bc6c6e538478 *R/utils.R
f6fcdee413c327e3e1db9318f430c027 *README.md
7431ea832375fe33ca9f2868833a759e *build/vignette.rds
e5e0b317144c161a94619e0492620a29 *inst/doc/quick-start.R
fc701f8204b874613005c68be1311035 *inst/doc/quick-start.Rmd
9e711b4921328db222b0f0a1726d3ec0 *inst/doc/quick-start.html
642c8ead434f3c0096f4ede616e4e941 *inst/doc/timepoint-example.R
14ea6acd3c0b17a181e29941abc96db9 *inst/doc/timepoint-example.Rmd
7d1bca8d13609c6e0f1e4d44b56e55a0 *inst/doc/timepoint-example.html
74d58b01a3b89341116e467e8aef1210 *inst/doc/treatment_example.R
7d5d4bbe2436067128ab1891ec8e22b6 *inst/doc/treatment_example.Rmd
64e2e109df0fc64b319a3cad02d8ba5b *inst/doc/treatment_example.html
1f095225128d10f2cc91610114cd24ff *inst/example_qc_report.Rmd
9e25401fd1a0b0aac0115efba2565bf5 *inst/example_qc_report.html
e8b79941a3dbe81de0aa14897f97f463 *inst/extdata/creds/encrypt_pass.rds
57a844fd64959ccf7112b119730dad91 *inst/extdata/creds/figshare_creds.rds
33bf3105ea36a8650b28913310f2913b *inst/extdata/creds/figshare_encrypt.rds
1f095225128d10f2cc91610114cd24ff *inst/extdata/gimapQCTemplate.Rmd
46d93be2bb3075a3dcb4b88269efbc6f *man/calc_gi.Rd
55d57a976bd463e9cb1523779a1d35d5 *man/cn_setup.Rd
ba69e061e9643d813af074c5b186dbf9 *man/ctrl_genes.Rd
be97e2b3350b37b1660184f98723edbf *man/delete_annotation.Rd
ad32b636b51cba0fcb194e9596024870 *man/delete_example_data.Rd
6613acd88fae875e5758d2fd4fe743d5 *man/encrypt_creds_path.Rd
a795dc2fdf28483b815af2ad614ed190 *man/example_data_folder.Rd
4c83f319de0fbe9c5657fc54d8162541 *man/get_example_data.Rd
2a221299e129f0d14144d7877fe57e83 *man/get_figshare.Rd
64a0ead58f2f40a40c572f9d9f4126c6 *man/gimap_annotate.Rd
94d2cf0d25cddc18d775f098268bd6b7 *man/gimap_filter.Rd
6eec78d5428caaf96fedc1ab21e01811 *man/gimap_normalize.Rd
e6c87c81876f60d6e903176ae9ab202c *man/gimap_object.Rd
4ab5ac5e65be5da90686bef909081157 *man/gimap_stats.Rd
3e31f2fcbb4f6690739a80dadcb65ef3 *man/key_encrypt_creds_path.Rd
f0462616001a6ffe7bdab2dd8babe820 *man/pipe.Rd
58aed86f3cdc88e71e11a77d0a857d70 *man/plot_crispr.Rd
4b6a962159990458532044987aadf84c *man/plot_exp_v_obs_scatter.Rd
c0a73f2cf7570dcde5a9cae5368c78b2 *man/plot_rank_scatter.Rd
56ffb92444f83d4baf5bd47fcae64340 *man/plot_targets.Rd
a29761286ab7a039ee29ffb29d4ef96f *man/plot_theme.Rd
ff523f1fb1ef089246f2119b25f39a22 *man/plot_volcano.Rd
48c3925336f0ab75f5c0fdf46f84672f *man/qc_cdf.Rd
2a8f89d836562759653bd80ec2d4f068 *man/qc_constructs_countzero_bar.Rd
fc831f29842e50d42c7a6d8a703d6b6f *man/qc_cor_heatmap.Rd
2841d0d9d136fdb5f49f9ec326d41e8c *man/qc_filter_plasmid.Rd
0c9f08869127be968c735125f4600fe0 *man/qc_filter_zerocounts.Rd
f6b9ad1c0c65d1e76a37ca742b5b3bad *man/qc_plasmid_histogram.Rd
db4aacf41e27202daf2d6e67d7e8646d *man/qc_sample_hist.Rd
325e92e1bbf3ad08427e87f0bf0e5ff2 *man/qc_variance_hist.Rd
948ca6f46218a3645cb6650975f7cd4a *man/run_qc.Rd
d081aac9b603a0afc5057c57f4b9fa54 *man/save_example_data_timepoint.Rd
ea577fd81145a2e052bc720620cff547 *man/save_example_data_treatment.Rd
aca378661763ac0f950956baa82ebda6 *man/setup_data.Rd
c53ce5271f074afde605abb3ef5a2efb *man/supported_cell_lines.Rd
dd92ad8e405b38b4c319dbefc940554e *man/tpm_setup.Rd
b3d2e8791ddaba0ac94191361a336be9 *tests/testthat.R
345ab98140885b3a71acc0d90aceaca4 *tests/testthat/test-annotate.R
bc12bc0e77c48257debfe7a8a37c3e33 *tests/testthat/test-figshare.R
4c9735f6a35a2bdd6c907460638bfbce *tests/testthat/test-gi-calc.R
6cd76de0d6324232c92352cdca300e51 *tests/testthat/test-normalize.R
8cc025959ead66b33b67a0bff4a97eb2 *tests/testthat/test-run_qc.R
9084d566e84f99c42daaeae2d1acae31 *tests/testthat/test-setup_data.R
6bee842fd3149c165c79750c7d00f7a0 *vignettes/images/results_table.png
d0431667829a2dc53ed83504f4bc6f93 *vignettes/images/volcano_plot.png
fc701f8204b874613005c68be1311035 *vignettes/quick-start.Rmd
14ea6acd3c0b17a181e29941abc96db9 *vignettes/timepoint-example.Rmd
7d5d4bbe2436067128ab1891ec8e22b6 *vignettes/treatment_example.Rmd
