689c3874754105241fecff0463ac6787 *DESCRIPTION
c4730e1fdc8815328dda77a85aee91c6 *NAMESPACE
261a5cb1c3f99fcf5258fc00581d1782 *R/DataApes.R
010b92b31a817997550d2fff8d6b18cb *R/DataCetaceans.R
cea3aeb7ef747aa571e2c309b99f95a5 *R/DataFelids.R
d182a526e84a62e41a886c4c89d43f5e *R/DataOrnithodirans.R
61f232570d57d5acfee998292f242b4e *R/DataSimians.R
3c0e43736f7574e5966d51c1bfe8b381 *R/DataUng.R
64b48b812a654fc1f231371db43375a5 *R/PGLS_fossil.R
30afe01ee4882a6e88578bbb05fccd11 *R/RRphylo-package.R
19ab5b042f3fb842ff1ed606594ad8a4 *R/RRphylo.R
2197d9f4fa695f01ecfab43f0c23d725 *R/StableTraitsR.R
6fc336cd3b41c6b44fdb7b7b405c4c5a *R/angle.matrix.R
40994cbde40c9cae4b39a63191572616 *R/auxilliary.functions.R
a0d88fdd940f7901f1ba1953c6c599f1 *R/conv.map.R
39806816ddb6bcc49041857ddd145715 *R/cutPhylo.R
0a0fc5c8e30a5be8a34cc4eadaf28406 *R/distNodes.R
918307f0fd40d65f10484dd2857ebfaa *R/evo.dir.R
e848c6d170518734676bf253024671ec *R/fix.poly.R
4c8a206020d7e583749b08ef949d1465 *R/getMommy.R
a6c0fd31bf8693346b357664c3737da3 *R/getSis.R
35fc32919ff39c89255d1d443e5571d0 *R/makeFossil.R
bda7249115ad6396415da5a18f1d4f7d *R/makeL.R
4e583816340ba7c210d68030644a8abf *R/makeL1.R
984a5afa884ab259ab1b1ac2594eebf2 *R/overfitRR.R
ebe69f43459fcae5efd2f4e833d380fa *R/phyloclust.R
edce4a560ab142cb331c221fd7de6a09 *R/plotRates.R
0a2640b77190ea4aec8ab3f154123cf5 *R/random.evolvability.test.R
2d0b5927f8892168839feffc3ecd14bd *R/retrieve.angles.R
07209330c8d05686e507ba51b0439d45 *R/scaleTree.R
e8659f2933b63f802ddaf269b4c2868a *R/search.conv.R
6207775249dca590aa4a65ba1ab4fe5e *R/search.shift.R
82c3d47274d9bd3469c629d6f1377918 *R/search.trend.R
5e14ce6196d4ee8be0d743360b369fb1 *R/setBM.R
0f79e67d5524cb7423a273efcd39740e *R/sizedsubtree.R
3b16f51e25535641a1120da127ab1b80 *R/swap.phylo.R
21e004160bb5b3fa4e2285ec477f7e13 *R/swapONE.R
432d40e483f7b09a5b7ec8aae5a7e1ee *R/tree.merger.R
a87ca38420c20324db0e7c56f6860382 *README.md
10d8b89a9467cb5fed94037f90259f17 *build/vignette.rds
3c3127f2d5d42c3912d57742f834a285 *data/DataApes.rda
8f95ad61fa098a0312f427dfd081a94d *data/DataCetaceans.rda
fca9800a2683faa2384620e5c1d69467 *data/DataFelids.rda
ca1f8209c9fbef21c62244b04b7dfea2 *data/DataOrnithodirans.rda
bd09febd92276d372767ce4e0e572613 *data/DataSimians.rda
5944cb20f016659dfacf56bc485c6c27 *data/DataUng.rda
4052decb07a62096be362811f5d03b35 *inst/CITATION
ef3c21954bbf699cc7d40b50ecd5f4c4 *inst/doc/RRphylo.R
524b7296957ad6a82e5eb48934837e3f *inst/doc/RRphylo.Rmd
43e035aed85622060804fd7449f8cc2f *inst/doc/RRphylo.html
53278451f732dbb2efcbd717e9d7abe7 *inst/doc/Tree-Manipulation.R
83ecae5ba84e1832c7dd99be7f2fac5f *inst/doc/Tree-Manipulation.Rmd
498570873a8eb4c1c89201c6e0b613ca *inst/doc/Tree-Manipulation.html
bc7cceaf23ee0fe0f2ba59231c753c92 *inst/doc/overfitRR.R
7fc12bf25be2167f383faa47909df6fd *inst/doc/overfitRR.Rmd
0734d7625473f23b6248fd2ce8bac899 *inst/doc/overfitRR.html
1e79fff39abbf8b6866c2ba959d3c136 *inst/doc/search.conv.R
88071cfb570a7ea2526f3932a5fcc83b *inst/doc/search.conv.Rmd
1b2219cf3e7a8b799f4b3ec112f273d1 *inst/doc/search.conv.html
e6c96e5a78c123cd4985584845b3a7fc *inst/doc/search.shift.R
49332ff308cd9c9c3beb93cbf8c2f6a2 *inst/doc/search.shift.Rmd
5eafd5d9e54e4441621191e3ccaed641 *inst/doc/search.shift.html
78bb5f77e62ec207dc9ba8daacab8875 *inst/doc/search.trend.R
8cfa51c5ee15858551f27cf9f3e1a8a1 *inst/doc/search.trend.Rmd
ea49f7e3320cfb1714cd8ddf5a458feb *inst/doc/search.trend.html
034e3a1975dbf9b9f4532daa510201d6 *inst/doc/swapONE.R
30bbc64164062a4c0fa480fbfab9045b *inst/doc/swapONE.Rmd
a245186f6ade1fffcad021219b5f2352 *inst/doc/swapONE.html
cf85045a804de3a4a47e510e331887d1 *man/DataApes.Rd
8a33c48eda456d4fb64cd196831aee46 *man/DataCetaceans.Rd
de67ca56336b6f560839fc0d29526667 *man/DataFelids.Rd
f592999474d4737c21f59575ac556652 *man/DataOrnithodirans.Rd
ff5ec15a4c7554278398ac144ae86906 *man/DataSimians.Rd
427d06e83f321e383d0769484de0b08d *man/DataUng.Rd
9c9c8ea7ff7cffbdffbd7b388a5e9e55 *man/PGLS_fossil.Rd
4935dfa6a70581b37681134f2647bb21 *man/RRphylo-package.Rd
b84a561d2329a7a8348446aeb9265bc4 *man/RRphylo.Rd
49bad362f5c536eaa1deff9a14383650 *man/StableTraitsR.Rd
b20f26a1bba2858e9de4d41f0b62b610 *man/angle.matrix.Rd
d53573c48c42999801eff4343e9ddb9a *man/conv.map.Rd
6a7f9c93030149f131ddf909094cea4b *man/cutPhylo.Rd
bc18f45c9d57c19cb6a5b02a3517c00c *man/distNodes.Rd
a8020baf596868d2ba052076aab27967 *man/evo.dir.Rd
f925c9364ca900fcb8edbf8ca4a22683 *man/fix.poly.Rd
ba98737d1850c34e86ff12c28ffcdc35 *man/getMommy.Rd
87899a18538b1d7934f815cec9ac60e9 *man/getSis.Rd
aae4e8bf77e5564046bdbf0a533f96b1 *man/makeFossil.Rd
81913e50f1d7c91185b865fcd568692d *man/makeL.Rd
6a4c51d45eaeafa62532e307d6fde604 *man/makeL1.Rd
7380cf8bac75e485b28b957279315dc2 *man/overfitRR.Rd
498bb61484e16213807837e834669e9c *man/phyloclust.Rd
b7a00bfdef5527154bbc55cbefeb7cbd *man/plotRates.Rd
e64128fe5cfd9e6bc9ce2d64febd67f4 *man/random.evolvability.test.Rd
c463bbfe1974df212b34e1d76fd5b0a3 *man/retrieve.angles.Rd
21a9a3e9f06df0e1a308a93b88a4a00c *man/scaleTree.Rd
37b356a0389d1cf6edc2aabc140bfb09 *man/search.conv.Rd
f79649a2ae77ebcefe9c0b8ccae557d5 *man/search.shift.Rd
4f95d54516b75db07381bbeb60c96dc9 *man/search.trend.Rd
67a7a6a3b82f3925225ae856c98a7f9f *man/setBM.Rd
031b461db3c0b2ef60df70493f756434 *man/sizedsubtree.Rd
071f3569470da51f7c9065f7e630656b *man/swap.phylo.Rd
5f16543cffe1ee30e24bb4bd80e854a1 *man/swapONE.Rd
a5c86ba5db23a39c99f33f59bfa75cc5 *man/tree.merger.Rd
524b7296957ad6a82e5eb48934837e3f *vignettes/RRphylo.Rmd
83ecae5ba84e1832c7dd99be7f2fac5f *vignettes/Tree-Manipulation.Rmd
7fc12bf25be2167f383faa47909df6fd *vignettes/overfitRR.Rmd
88071cfb570a7ea2526f3932a5fcc83b *vignettes/search.conv.Rmd
49332ff308cd9c9c3beb93cbf8c2f6a2 *vignettes/search.shift.Rmd
8cfa51c5ee15858551f27cf9f3e1a8a1 *vignettes/search.trend.Rmd
30bbc64164062a4c0fa480fbfab9045b *vignettes/swapONE.Rmd
