483494314ecbe81d9a133ac680b9f635 *DESCRIPTION
4315c7db6ceb9808857305fe0a6fce82 *NAMESPACE
4f8ce0c6623bf826ddbdb83879be107b *NEWS
ad2d39b25c8813d3f0411551666968ce *NEWS.md
65293e3918e51efc0751fca22464db0f *R/AllClasses.R
65293e3918e51efc0751fca22464db0f *R/AllMethods.R
1ca24e412ac56aa5de7c549574bd3638 *R/PCAScoreMatrix.R
96d9f028772e2e16c66651c53ab02d31 *R/biosHeatmap.R
913c0c7dfe8dcea40e8642553764064c *R/cascadePlot.R
9d70662be64362b2566461c1057f8e82 *R/colors.R
4a385be73bf86c5c86035ec122ed076f *R/compactTrellis.R
6ee7c4b0028343ad6be7da95bf889ec4 *R/ellipse.R
1fadbb4bd5ad01e5646b1051da64f149 *R/expVar.R
cec3329ed149e7f4983d369761d734bd *R/fcol.R
1fbaeaaaeb5764a96f9307ed89ae983b *R/figurePanel.R
3d0037434e8b9948bf1866682a691455 *R/ggSmoothScatter.R
0175fc594f1049a08ea9129ff86b0a97 *R/hist.R
50cfb424e9ecfadb3d60d90a92c501e5 *R/jitter.xyplot.R
7f4a9dd30cee876dc1884ab2582021fb *R/openFileDevice.R
a7bc6159d889afa3c4e42aeffa1df7fd *R/p2asterisk.R
2467359f36dd9c8cc080b3879519d196 *R/pairs.R
2e15a2071ecadda7649465b02b87f6e1 *R/pcaPlots.R
e0e1bf52d01b022bdf163880c79ec102 *R/plotVenn.R
d769d943f208206b13cc6e0b6f8dc9b2 *R/ribiosPlot-package.R
c4a7d71598bd1c242dab3c19ff0f11c7 *R/robustdist.R
00ccbd2cccdf3cff8616aec963e93680 *R/utils.R
653226a5cb5916380ecf00615bc89e15 *R/vennMembers.R
fa94b93d8c9cb44c4639c3cc86f8a11b *README.md
b87be1412c2869c4b8545388c5d4a11e *inst/Rscript/boxplot.Rscript
4ca8fd1bc671df7cc2253c31bdd6b1e9 *inst/Rscript/coverage-plot.Rscript
d3f1c04ab5efbb1b873cc88d91ebbdbd *inst/Rscript/geneset_xyplot.Rscript
a8c43de228c4045f28c3b50c9ffc7f99 *inst/Rscript/scatterplot.Rscript
564c4cad3bce60474a33f8bdb51d02f8 *inst/Rscript/test_biosHeatmap.bash
42da5a4aa5c348b21ead4e2e6955e0e9 *inst/extdata/lmExample.txt
33f856d69ca742f4d2d74a95ed6df118 *inst/extdata/test-coverage-plot-featureInfo.txt
7d0204b8cd388187f1d4da4277a18c92 *inst/extdata/test-coverage-plot-input.txt
abb17432a97e8b73347b248964e0cbf8 *inst/extdata/test-coverage-plot-sampleInfo.txt
0c7190d0c3f1263a5ffbd047d30bbe53 *inst/extdata/test-exprs-boxplot.gct
7087c54b010b48ed50efc0f29bc50c10 *inst/extdata/test-exprs-boxplot.txt
150a68bcf9c9513723840ae123933f3d *inst/extdata/test-scatterplot-oneClass.txt
291a1005714649b0122255c4c877f5e1 *inst/extdata/test_geneset_xyplot.txt
2377f2d6d9065621ea4cc75bf2525c66 *inst/extdata/test_scatterplot.txt
d7a31adde8027ca2c00962ece56b4f03 *man/PCAScoreMatrix.Rd
351d0ec6da3cdd35fd360402423872d7 *man/as.data.frame.PCAScoreMatrix.Rd
04841e70d1d73d3ad8921b3a12c183e4 *man/as.matrix.PCAScoreMatrix.Rd
e29b97c598ef9b5a82cc31de645ba98e *man/biosHeatmap.Rd
329540c69701a344c32cf48ddad7d47c *man/brewer.pal.factor.Rd
5a401bfec3aae42a6037cf0232c8b186 *man/cascadeOrder.Rd
8313b5eeb2137dc1795ea5502c07448f *man/colorpanel.Rd
545413941af6eab68a8af40836f0bd3c *man/compactPar.Rd
13680c20bcf95d37171bd753aabff791 *man/compactTrellis.Rd
f7c1503321fa3df272699d7d9c29de9e *man/confEllipse.Rd
d248a47ccba8ce054d7e8a98e7e06be9 *man/degree2radian.Rd
94adcbabd390882e95a6cd9c475c465d *man/display.colorpanels.Rd
3a2f5466b92d2161a876c4faf3ac0826 *man/display.threecolor.panels.Rd
3c415d492ab70f9c6c3d3df307e9f0e4 *man/display.twocolor.panels.Rd
7b431bb0cab6eaa1f39a2643c9e8312c *man/ellipse.Rd
d8af5d76d0853823475b4d07e5074bef *man/expVar.Rd
94d1fc63a7d72f373c37a3a673a1be2b *man/expVarLabel.PCAScoreMatrix.Rd
3403d3207e77d4307db855447d07739c *man/expVarLabel.Rd
09d8f88e381cd54f8ff3bf9c67181cc7 *man/expVarLabel.prcomp.Rd
5b050fbe4063997ae66286d669fc8ec8 *man/fcbase-set.Rd
2bd9f12b6f57467f6c7007548b6d8fa1 *man/fcbase.Rd
6a4c1080238bd151656df79d65687e4f *man/fcbrewer.Rd
7b4aa8741b92e685212d9fde5290c8ac *man/fcol.Rd
f19a81b8a4db9c9f0c5452c529ae2f9c *man/figurePanel.Rd
1cc08231e778278cc8088cf8acc6d67c *man/getDefaultFontFamily.Rd
b387e0d5a896b8af733aca2abe94f855 *man/getExpVarLabel.Rd
54ac71c2840ea0479e8e10aa0c41eb68 *man/getLims.Rd
0ddf0b3e19726f8c39ac18ea99342c57 *man/ggSmoothScatter.Rd
780e66980bda0809b949b52ede9590a2 *man/ggSmoothScatterWithAux.Rd
9000606902146f96d52cceee1d32f87f *man/guessWH.Rd
7b3f8fa44e487548a79c08b5a478b1a2 *man/histMat.Rd
012ec92aca5b5e2185f4a21c7d6fc948 *man/idev.Rd
0adb0a8f14afe78412904de3b47c3c65 *man/intRange.Rd
2b7757256857437d55724051be90aa21 *man/jitter.xyplot.Rd
f044b05651555fabd9e1eb5dbec24a23 *man/midCol.Rd
5eef883247ade5d17c7bef799c33ec42 *man/nonNegCascadeOrder.Rd
70c7b94e9664c4ecaf32e06fa90c1ad3 *man/nonNull.Rd
6933e6e84f89ea1c625e01d3e9e60ce4 *man/openFileDevice.Rd
b4b86f8f8ec0ad78179a24d68cff64a9 *man/p2asterisk.Rd
57df03a20aa75da1780d89c5061c81d1 *man/panel.cor.Rd
b26e832747b83614aa709502ec19169e *man/panel.lmSmooth.Rd
a9cbaeb637c5888c4d928dcf2ab57e01 *man/pcaRotation.Rd
d507cfc79f482365177b399f493d0793 *man/pcaScores.Rd
adde7c9ccba5cc53907e9e4ef3e18c97 *man/pcaScoresFromLogFC.Rd
b35c79fe75523dcaba90b102c2159dbe *man/pdf2png.Rd
166c9a55f272ff9eb8e3ed1ad88f5c27 *man/plotPCA.Rd
ac4b717921a5fb70c624ad2e199d5f41 *man/plotPCA.prcomp.Rd
10db87eb7a8a5537254c6e0ce37310d8 *man/plotPCAloading.Rd
7eda24991338a34fceb07ea9b2884f6b *man/plotVenn.Rd
c65c824f494f24c60b7e3ec08ead93fc *man/print.PCAScoreMatrix.Rd
1c7abd6324f051920887ca138c260f09 *man/print.fcol.Rd
a674e85630382e0595c688693950e290 *man/qBreaks.Rd
d419f9e3ca5fa4d6368f173a5ddcdd1c *man/qHist.Rd
81128fd90fef1d5d7f6957ab8203ef7b *man/radian2degree.Rd
9ee5c7f4d0a11dcf8aebbb7c8e980f23 *man/reexports.Rd
a05a9868df5bb5d6f737966dfd0e51b9 *man/ribiosPlot-package.Rd
26bf0eb1781c16a3b427a07d42c93b63 *man/robustDist.Rd
a2ccc2482f9ad9ed1215e1bf4a6599dd *man/rowVars.Rd
81b15eefc72d2095bfa51404aca71d19 *man/royalbluered.Rd
7fe67e422847ed121254e0e012cf27b6 *man/setCompactTrellis.Rd
34a63e943fff502f0a6c98375890fe23 *man/squareLayout.Rd
18a76ddaa9d811d8dd87209fb0412c02 *man/sub-.PCAScoreMatrix.Rd
6840e0c93b7a8dacf7306b06993f67ad *man/symrange.Rd
60b2170085194a0ef4deb27d2e2a8f23 *man/threecolor.panels.Rd
51292edffc7c994e7c0172892badd2e7 *man/twocolor.panels.Rd
322c80e4d852379fc3ddea076f268c83 *man/vennMembersDataframe.Rd
716223fd74228073b3ba0d8366cb2fa0 *man/vennMembersList.Rd
b35f446ada68cb13e36f81e2595f7efe *man/xclipHist.Rd
635f3e396c13dbe13c51d90f10e8e2cf *tests/test-colors.R
390114a5a3b8cc03bf9ccf7a159c29cc *tests/test-heatmap.R
ed90a76ac6bbbbdf7a2e6e6eda7bba4c *tests/test_openFileDevice.R
289edb39b8bdc0641a72a584ceb2fdc4 *tests/testthat.R
2285b68d125b8cc8fda061fbd40876d7 *tests/testthat/test-PCAScoreMatrix.R
b7aa425b2da89b91d0a0400c3d31022a *tests/testthat/test-ellipse.R
f03ff783b3c25d01fc8feb472983693d *tests/testthat/test-expVar-prcomp.R
b83bfdd816f434a509840b278319530f *tests/testthat/test_vennMembers.R
