dc0b9575b50538f91408c855bbe2465a *DESCRIPTION
6cf7cff29512f5d194dff0cf1ee01dc2 *NAMESPACE
556c60f086695fc389a9a785f6d5eb3c *NEWS
16c7d5862f8b5a78fc57b7e184f46df0 *R/Extract.classes.r
9e3c4b34bf7ab4dd108bbe06974ca01b *R/LD.r
af6970c7629a56fa9c0d3910ff5eaddf *R/LDDist.r
166e9a51c91da1aae019abff601e1295 *R/LDMap.r
6c6b43cece684eac36993f1c1191c319 *R/MME.r
b12af2bb5d9e965078a1f79e03cab0ec *R/add.markers.r
17b6a07d811a95f37c5647bdb4038586 *R/codeGeno.r
4a5d8bcb875ca65a4f6ab18e456a5902 *R/create.gpData.r
9d62b2bd61d7d896296f9416d2aa2286 *R/create.pedigree.r
db822db5f3416812878ffa27541e9ca9 *R/cross2gpData.r
85dd28b09b39179ab4b5bd95977bbeb7 *R/crossVal.r
9d857dddeb1339d7d11ffd262bf0c978 *R/discard.markers.r
d841863795e4c431d73b22fc742fea45 *R/gpData2cross.r
b69294e927cfbd1efc44632f3ba3f7bd *R/gpData2data.frame.r
15c23155c34a8078dbfb1f7790dcd840 *R/gpMod.r
349eee5cfb144caae38360caff72989d *R/kinship.r
f6f4a82361ab92696668c0e21d359174 *R/manhattanPlot.r
92512eee109b976419acefa83e364922 *R/plot.LDdf.LDmat.r
e80a7850f05cf04e2acef724bdc95349 *R/plot.genMap.r
54220826e566f042e45e955be9da3f0f *R/plot.neighbourLD.r
115c7ef61722fa2aac7ce2ea9ba76bc4 *R/plot.pedigree.r
b0ff40422de778e1d801b60c64641dfa *R/plot.relationshipMatrix.r
1d00240310238272317531c32e04cfe1 *R/predict.gpMod.r
1081826a4318ff083905a5e49b1b0bf9 *R/simul.pedigree.r
db72bd5ff81194207d9bfc4500328c70 *R/simul.phenotype.r
fc362fdd129a1d2cef99d91e44916a1f *R/summary.LD.r
818ae01ef98fb288ffa7ded53226945d *R/summary.cvData.r
ffaed96e8546832e61b51499c5f3e665 *R/summary.gpData.r
358e157c5086ed64ea4cb0dd842e2a7f *R/summary.map.r
123a3582440892a5520d23b908f074a8 *R/summary.pedigree.r
2845b9449c5bc6d3669724f22085e7c1 *R/summary.relationshipMatrix.r
82003f94f274914c19e711f1fc71dc7a *R/write.beagle.r
6ac0d4115e8d99649fa605d9eb4e8ce8 *R/write.plink.r
00daa4742fb137a3dc1fefed81824ae5 *R/write.relationshipMatrix.r
2760b50da4fde441c793f37fc2956851 *demo/00Index
041a2f6f832d3294d757469d6d646625 *demo/createWheat.R
99d24a007e3a2f49fbf7c8c4e774fa70 *demo/gpMaize.R
fc32074b371983bc1fbdde1988e0348d *demo/gpTest.R
6aa8a17e6568211957d1436c1a5e3c01 *demo/kinship.R
178e47ff524ea91c6d5c56cb4fb4a4e6 *exec/beagle.jar
8de21517efc83b8624d78ec2fa334847 *inst/CITATION
534fc3ff3ddd3e6676c2985ac280364f *inst/doc/IntroSyn.R
ef85847e2a99826648d598be8c735708 *inst/doc/IntroSyn.Rnw
fa54934b8e65cf207df2cffa714a72e7 *inst/doc/IntroSyn.pdf
bde2b4eebb35a8f40a0358a62e106989 *inst/doc/IntroSyn.tex
8c6f102a84bcde15371e135fdf840cda *man/Extract.GenMap.Rd
392401bd2e862531a3f4539d5a227b73 *man/Extract.relationshipMatrix.Rd
5774d963383be3fd0ebf610a12159e6f *man/LD.Rd
ace22ef73f3502ae7748889e1bc6aacf *man/LDDist.Rd
5e8ae65f07b63871e13e72bbd67b6e47 *man/LDMap.Rd
c8f12913f80088dc986f4b1cf29a7d30 *man/MME.Rd
700f76cb903fa0076925d0bee481bc99 *man/add.individuals.Rd
cf2eb85f5ef22f7861c788092d914c46 *man/add.markers.Rd
ea3cf10187a8919cc40b0b1858e9ff9b *man/codeGeno.Rd
19e6b0f8f2e4f412aca1535a21399f2c *man/create.gpData.Rd
ddab8f49ff6fb4424fcf3313f056ed5c *man/create.pedigree.Rd
d64b40ba05d827abc865e11c502faa22 *man/crossVal.Rd
02b3c5962f885832b8519e830b9a120a *man/discard.markers.Rd
33d22c23e11fab2d4971e6861389b5a5 *man/gpData2cross.Rd
599b4811a7953eda1232844bc1bb5a9f *man/gpData2data.frame.Rd
041662ee867694c6873f7d0dacf10452 *man/gpMod.Rd
34ba12ddbd8407a88cef6c0510a59740 *man/kinship.Rd
e02380eb7b78521f9f64adfbfc0e0567 *man/manhattanPlot.Rd
e9de2a98ec819fe0ee3535f9a07bfe68 *man/plot.LDdf.Rd
8fd7da21377e0741b575996e4ab0c164 *man/plot.LDmat.Rd
7259d5806aa1e8481d16ef82db84d545 *man/plot.genMap.Rd
3be0f206fbc819f38968997cf9165642 *man/plot.pedigree.Rd
5d5010cab9fe2426fc86308a546ad81c *man/plot.relationshipMatrix.Rd
a04245a16a20d6a490aab44f8d68082e *man/plotNeighbourLD.Rd
b8cfdb3159b8b760c129ddf4909b9fe9 *man/predict.gpMod.Rd
160c19d46dac16b05e23c3f655f23b7d *man/simul.pedigree.Rd
07f4429ea42a7234084bcf654d325395 *man/simul.phenotype.Rd
36a917026cc33eff997f6cee277e3a0e *man/summary.LDdf.Rd
63333cfcbe0840605ab34a87467c5b81 *man/summary.cvData.Rd
e06604a6c40be8d682b7d399e012d923 *man/summary.gpData.Rd
454bcaf2989cb4fb0396a697667acfc9 *man/summary.gpMod.Rd
b01cb468da8a57d85760264fb252db43 *man/summary.map.Rd
9c747ced769267446d866f7ae22e731d *man/summary.pedigree.Rd
013f43d36c910755e6b8314beb93bddd *man/summary.relationshipMatrix.Rd
59350f4ef164f0167a289c0070b4983c *man/write.beagle.Rd
e18042628da42dc6b7b03a01177dc596 *man/write.plink.Rd
b9150e4623b9f58816d8cdfe630809d8 *man/write.relationshipMatrix.Rd
ef85847e2a99826648d598be8c735708 *vignettes/IntroSyn.Rnw
070ec34a1857357c799551c739405c53 *vignettes/IntroSyn.bib
1c02fc97e0a53b4e581a276863642e0e *vignettes/Makefile
a38d834a551d1053ed8a835c8cddcb02 *vignettes/bm.sty
1394484863f8bbd9ad957d8cd4f03af5 *vignettes/cv.mice.Rdata
398064e67165143bf0073e4558b2b503 *vignettes/figs/LDmaize.png
505d2a4b216f036b9cfc6723a522b6da *vignettes/figs/cattleHist.pdf
50989c9a32c4b8cc3880f7a5eb530b88 *vignettes/figs/genMapCattle.pdf
0fbd1838aee5514a7871182fbd8c2e28 *vignettes/figs/genMapMaize.pdf
064f35fb2cf787857a9358b6f88a3ab6 *vignettes/figs/genMapMice.pdf
9d6605f7949aff89e8077d4e2ffdd607 *vignettes/figs/maizeHist.pdf
2c6edbce1d03213476cd6170ed6f5677 *vignettes/figs/manhattanPlot.pdf
013192608c721278f7c97309f4ae9184 *vignettes/figs/miceHist.pdf
d04e9b025ddeacb0e801d724e27b833a *vignettes/figs/relMatA.png
02d7b4f6733418ee24f011546011f662 *vignettes/figs/relMatG.png
e24f176a468cb04c03a09a9d0a557f41 *vignettes/figs/synbreedPackageDescription.pdf
