83bbe50c901e1e7ceec0949adb93a713 *DESCRIPTION
2d073946327993e0646686914a6dd278 *LICENSE
439840aa51ccdb00c723043273a2aaf6 *NAMESPACE
0b58c132165436a2044c3df8a3a7e8c9 *NEWS.md
2174a0b4bd4dac51a306197a49fd17e6 *R/Fast_analysis.R
82021a83d65228a72064e241dacf9c95 *R/Fitting_Models.R
254c2382622d45521b8327dae8b5a1fa *R/NSSHeat.R
ff351832b22ee7894fad1da6e3ef7318 *R/QC.R
e64fdb18b72ef4220e248bb4693ef454 *R/Simulations.R
cb25201dc31a9418508b89241313b66d *R/TL_stan.R
64e32b0c20e04dfc195ebd0606d4ab55 *R/Visualizations.R
61f2269ee3a222e86200b82539c485d9 *R/bakR-package.R
81b140c71ca41d0ab322ed0e772b4280 *R/bakRData.R
ee0bf111ec1e39669bb6906eac6c7e09 *R/cB_small_data.R
066d56a81d2742891190a4e609142912 *R/cBprocessing.R
032abadab9a3c3cd8b014ecd61ec4993 *R/metadf_data.R
f5793e57b25caceab03e52f38c5136f3 *R/stanmodels.R
d74c57981e210d494bca2bed27ece3b6 *README.md
90b4b1da3a98c1d4fd779b38c9c56241 *build/vignette.rds
1cc60bdd8610449d30184e0bb374bf46 *configure
363506993327ae3b7de4216fa3a1aa2b *configure.win
7969fe5784078463b7357177ca30675e *data/cB_small.rda
6e566aea8afbde0670acbb346685d1f7 *data/metadf.rda
9f024ec45ab4b4434ec524e1ce686299 *inst/doc/Further-Analyses.R
8436d8527fe21b13af2ec8f5181ea23c *inst/doc/Further-Analyses.Rmd
c243e501e7a8d174be0b2dadd2307c24 *inst/doc/Further-Analyses.html
dc7acf51445098fe368bd76980fd2f69 *inst/doc/Getting-Started.R
ecdb942cd0b0801ad6720db690170d4d *inst/doc/Getting-Started.Rmd
072e98c32a13bf7e2630418988fbd4a5 *inst/doc/Getting-Started.html
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
68e634e96da03d5e6ccb98b759473e55 *inst/stan/Hybrid2.stan
e80d9e1ffd78b127cac2c81993556ead *inst/stan/Hybrid_NSS2.stan
e21777dc29266dfddd0c49b8674d0150 *inst/stan/MCMC.stan
1e8bf3ab62cd156c98df61c385210b22 *inst/stan/MCMC_NSS2.stan
c50711ac2f1133de96cf7446c2c3a76b *inst/stan/Mutrate_est2.stan
d3934e0654efe6862f30330cc971e2f1 *inst/stan/include/license.stan
a2f64a7cdc97d66ad75c094c0f6b640f *man/FnPCA.Rd
a4d41acc3f51f0148d79849947239cae *man/Heatmap_kdeg.Rd
083ad8ac247da499d49b5ca70130c1ab *man/NSSHeat.Rd
6d705a0ce6b0019650eea7ec5374e707 *man/NSSHeat2.Rd
f9d6c8c0d6b0681c39147bbf576eb3e4 *man/QC_checks.Rd
22478c206b8182490fd06f6f61390e7e *man/Simulate_bakRData.Rd
39f3ded46f2228b77ea5a84ca0d9a0fd *man/TL_stan.Rd
f7e46ee26c2375450d155996dcea2425 *man/bakR-package.Rd
303273e28e55690cdf6ed799d8f2be8a *man/bakRData.Rd
89b9abaf78832e35d7d97f679a15f2b6 *man/bakRFit.Rd
fe08661ef14df0a838f50c689dbc13a2 *man/cB_small.Rd
b0c45b35fc0a4e39634bb8f906a0c6b9 *man/cBprocess.Rd
0330079ebc173858be5283c139fa95cc *man/fast_analysis.Rd
c7949115fa74de2fc00263e6ef5586f2 *man/metadf.Rd
cc3e395bda6c119eda83005b10d46d28 *man/new_bakRData.Rd
bbc38aefe736c3f9cfdf961a60f0a8ce *man/plotMA.Rd
acbad6c777e21646c2e5c7cc82ca27b2 *man/plotVolcano.Rd
7299d9d0998409bd7760c7f208358e45 *man/reliableFeatures.Rd
1baebf40e50c7131e7feffc3528ec7fa *man/validate_bakRData.Rd
8eb94ab0ca38362bef9a1ae171d63fad *src/Makevars
457929755cc1db9abe969d16b0006005 *src/Makevars.win
e2da8eaf4e7b831aacf8f8e4b84eb685 *src/RcppExports.cpp
143775e7190fbe75f3ffcfbcf8a2e9eb *src/stanExports_Hybrid2.cc
ef26cc4b20ebd46c86f0a7ec89e9c8db *src/stanExports_Hybrid2.h
fa7c0a9221284551760d0b0aa78466f9 *src/stanExports_Hybrid_NSS2.cc
fedc33858804fa93bd91fa06faae2b05 *src/stanExports_Hybrid_NSS2.h
6806a22641ed4d01b8d972fde798ab3d *src/stanExports_MCMC.cc
2c6d310d36a842712d08775c5a3249e0 *src/stanExports_MCMC.h
74d8a84f91680116ee339876b26f359c *src/stanExports_MCMC_NSS2.cc
70466cd69fd2fc043060122924b69c61 *src/stanExports_MCMC_NSS2.h
ac101afa8ec69af14385cac0cf0f971d *src/stanExports_Mutrate_est2.cc
03d57195ce1145d58b8563f9213ac474 *src/stanExports_Mutrate_est2.h
8436d8527fe21b13af2ec8f5181ea23c *vignettes/Further-Analyses.Rmd
ecdb942cd0b0801ad6720db690170d4d *vignettes/Getting-Started.Rmd
f70b39ccf4378108e4e238ce8c476ec8 *vignettes/NSS_Analysis.png
