Allowing divergence from initial conditions for 0 iterations.

maxGrouping: 22
entering MCMC loop
	Estimate Codon Specific Parameters? TRUE 
	Estimate Hyper Parameters? TRUE 
	Estimate Synthesis rates? TRUE 
	Starting MCMC with 100 iterations
	Adapting will stop after 100 steps
Status at iteration (sample): 100 (10)
	 current logLikelihood: -831329 
Current stdDevSynthesisRate estimate for selection category 0: 0.684668
Current stdDevSynthesisRate estimate for selection category 1: 1.20572
	 current stdDevSynthesisRate proposal width: 0.1
	 current Mixture element probability for element 0: 0.490744
	 current Mixture element probability for element 1: 0.509256
Acceptance rate for Codon Specific Parameter
	AA	Acc.Rat
	A:	0.35
	C:	0.48
	D:	0.43
	E:	0.34
	F:	0.45
	G:	0.3
	H:	0.26
	I:	0.46
	K:	0.38
	L:	0.39
	N:	0.45
	P:	0.3
	Q:	0.29
	R:	0.34
	S:	0.27
	T:	0.3
	V:	0.46
	Y:	0.28
	Z:	0.38

acceptance rate for synthesis rate:
	 acceptance rate to low: 0
	 acceptance rate to high: 1997
Writing File
Done writing
leaving MCMC loop
