Package: yaap
Title: A Toolkit for Archetypal Analysis Methods
Version: 1.0.0
Authors@R: c(
    person("Teo", "Sakel",
           email = "teo@intelligentbiodata.com",
           role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0001-9946-9498")),
    person("MCIU/AEI",
           role = c("fnd"),
           comment = c(ROR = "05r0vyz12", DOI = "10.13039/501100011033"))
  )
Description: Fits archetypal analysis models, including Euclidean,
    probabilistic, kernel, and directional variants. Methods include classical
    archetypal analysis from Cutler and Breiman (1994)
    <doi:10.1080/00401706.1994.10485840>, PCHA and kernel variants from
    Mørup and Hansen (2012) <doi:10.1016/j.neucom.2011.06.033>,
    probabilistic archetypal analysis from Seth and Eugster (2016)
    <doi:10.1007/s10994-015-5498-8>, directional archetypal analysis from
    Olsen et al. (2022) <doi:10.3389/fnins.2022.911034>, AA++
    initialization from Mair and Sjölund (2023)
    <doi:10.48550/arXiv.2301.13748>, coreset-style initialization from
    Mair and Brefeld (2019)
    <https://proceedings.neurips.cc/paper_files/paper/2019/file/7f278ad602c7f47aa76d1bfc90f20263-Paper.pdf>,
    and adapted AIC from Suleman (2017)
    <doi:10.1109/FUZZ-IEEE.2017.8015385>. Provides initialization helpers,
    model selection paths, plotting methods, 'broom' methods, and a
    'tidymodels' recipe step.
License: GPL (>= 3)
Encoding: UTF-8
Depends: R (>= 4.1.0)
Imports: generics (>= 0.1.3), graphics, methods, Matrix, matrixStats,
        nnls, rlang (>= 1.0.0), stats, tibble (>= 3.0.0), utils, vctrs
Suggests: archetypes, bench, compositions, fda, geometry, ggplot2,
        ggtern, irlba, knitr, MASS, quadprog, recipes (>= 1.0.0),
        rmarkdown, RSpectra, testthat (>= 3.0.0), tune (>= 1.0.0),
        withr (>= 2.5.0)
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-06-01 09:51:56 UTC; teo
Author: Teo Sakel [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-9946-9498>),
  MCIU/AEI [fnd] (ROR: <https://ror.org/05r0vyz12>, DOI:
    10.13039/501100011033)
Maintainer: Teo Sakel <teo@intelligentbiodata.com>
Repository: CRAN
Date/Publication: 2026-06-07 18:40:02 UTC
Built: R 4.6.0; ; 2026-06-08 23:51:03 UTC; windows
