# Loading NONMEM Output Files with Functions for Visual Predictive Checks (VPC) and Goodness of Fit (GOF) Plots

## Documentation for package ‘nonmem2R’ version 0.2.5

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

add.caption | Add caption to ggplot object
basic.eta.GOF | Histogram and/or QQ-norm GOF for ETA's
basic.GOF4 | Basic 4- and 6-panel GOF
basic.GOF6 | Basic 4- and 6-panel GOF
covload | Load the covariance matrix from a nonmem .cov output file.
default.GOF.dictionary | Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
default.GOF.params | Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
do.cat.GOF | Y vs categorical X GOF-plot
do.individual.GOF | Individual GOF-plots
do.multi.GOF | Multiple Y vs single X GOF-plot
do.one.GOF | X-Y GOF-plot
eta.cat.GOF | Covariate and pairs ETA GOFs
eta.cov.GOF | Covariate and pairs ETA GOFs
eta.hist.GOF | Histogram and/or QQ-norm GOF for ETA's
eta.pairs.GOF | Covariate and pairs ETA GOFs
eta.qqnorm.GOF | Histogram and/or QQ-norm GOF for ETA's
extload | Load final parameter values from a nonmem .ext output file.
extToTable | Compile parameter table suitable for reports
get.GOF.dictionary | Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
get.GOF.params | Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
get.label | Labels for known NONMEM variables
get.model.path | Get and set model.path
GOF.control | Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
grid.sim | Combine fix grid and simulated grid based on multivariate normal distribution
histGOF | Histogram GOF
merge2GOF | Merging 2, 4, or 6 GOF's into one graph
merge4GOF | Merging 2, 4, or 6 GOF's into one graph
merge6GOF | Merging 2, 4, or 6 GOF's into one graph
modload | Show model file
position_scale | Position for scaling y
qqnormGOF | QQ-norm GOF
set.ETA.labels | Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
set.GOF.dictionary | Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
set.GOF.params | Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
set.model.path | Get and set model.path
set.script.name | Get, set, and modify the global (or local) GOF parameters and GOF dictionary for labels
stat_corr | Adding correlation to x-y plots
stat_denx | Density for x in x-y plot
stat_dnorm | Normal density
stat_hmean | Horizontal reference at mean
stat_hmedian | Horizontal reference at median
sumoR | Compile summary information for NONMEM model based on the lst file, ext file, and the cov file.
test.grid.sim | Function for testing grid.sim and compare with rmvnorm
vpcfig | Visual Predictive Check (VPC) based on Perl-speaks-NONMEM (PsN) generated VPC files (lattice version).
vpcfig2 | Visual Predictive Check (VPC) based on Perl-speaks-NONMEM (PsN) generated VPC files (ggplot2-version).
vpcfig3 | Visual Predictive Check (VPC) based on raw Perl-speaks-NONMEM (PsN) generated VPC files.