Scalable Causal Discovery and Model Selection on Mixed Datasets with 'rCausalMGM'

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Documentation for package ‘rCausalMGM’ version 1.0

• DESCRIPTION file.

Help Pages

adjMat2Graph	Convert an adjacency matrix into a graph
allMetrics	Combined graph recovery metrics
bootstrap	Runs bootstrapping for a causal graph on the dataset.
boss	Runs the BOSS causal discovery algorithm on the dataset
coxmgm	Calculate the CoxMGM graph on a dataset.
coxmgmCV	Implements k-fold cross-validation for CoxMGM
coxmgmPath	Estimates a solution path for CoxMGM
cpdag	Calculate the CPDAG for a given DAG
createKnowledge	A function to create a prior knowledge object for use with causal discovery algorithms
fciCV	Implements k-fold cross-validation for FCI-Stable
fciStable	Runs the causal discovery algorithm FCI-Stable on a dataset.
fciStars	Implements StARS for FCI-Stable
graphTable	A function to generate a data.frame for objects from graph class. It incorporates adjacency and orientation frequency if estimates of edge stability are available.
grasp	Runs the GRaSP causal discovery algorithm on the dataset
growShrinkMB	Implements Grow-Shrink algorithm for Markov blanket identification
loadGraph	Load a graph from a ".txt" file
mgm	Calculate the Mixed Graphical Model (MGM) graph on a dataset.
mgmCV	Implements k-fold cross-validation for MGM
mgmfciCV	Implements k-fold cross-validation for MGM-FCI-Stable
mgmPath	Estimates a solution path for MGM
mgmpcCV	Implements k-fold cross-validation for MGM-PC-Stable
moral	Calculate the moral graph for a given DAG
pag	Calculate the PAG for a given DAG and set of latent variables
pcCV	Implements k-fold cross-validation for PC-Stable
pcStable	Runs the causal discovery algorithm PC-Stable on a dataset.
pcStars	Implements StARS for PC-Stable
plot.graph	A plot override function for the graph class
plot.graphCV	A plot override function for the graphCV class
plot.graphPath	A plot override function for the graphPath class
plot.graphSTARS	A plot override function for the graphSTARS class
plot.graphSTEPS	A plot override function for the graphSTEPS class
print.graph	A print override function for the graph class
print.graphCV	A print override function for the graphCV class
print.graphPath	A print override function for the graphPath class
print.graphSTARS	A print override function for the graphSTARS class
print.graphSTEPS	A print override function for the graphSTEPS class
print.knowledge	A print override function for the knowledge class
printGraph	Display a graph object as text.
prMetrics	Combined adjaceny and orientation precision-recall metrics
prMetricsAdjacency	Adjacency Precision-Recall Metrics
prMetricsCausal	Causal Orientaion Precision-Recall Metrics for CPDAGs
prMetricsOrientation	Orientation Precision-Recall Metrics
saveGraph	Save a graph to a file. Supported file types are ".txt" and ".sif".
SHD	Structural Hamming Distance (SHD)
simRandomDAG	A function to simulate a random forward DAG from a SEM model.
skeleton	Calculate the undirected skeleton for a given DAG
steps	Implements StEPS and StARS for MGM