Statistical Methods for Microbiome Compositional Data

[Up] [Top]

Documentation for package ‘MicrobiomeStat’ version 1.4

Help Pages

bmdd Bimodal Dirichlet Distribution Estimation
bmdd.nlopt NLopt C++ Implementation of BMDD
cscca Compositional Sparse Canonical Correlation Analysis
cscca.CV Compositional Sparse Canonical Correlation Analysis (Cross Valication Version)
DGP_OC Data Generating Process (Omics Data versus Compositional data)
linda Linear (Lin) Model for Differential Abundance (DA) Analysis of High-dimensional Compositional Data
linda.plot Plot LinDA Results
linda.wald.test Wald test for bias-corrected regression coefficients
smokers Microbiome data from the human upper respiratory tract (left and right throat)