| genDNABin | Generate a DNA Bin |
| genDNAStringSet | Generate a DNA String Set |
| genPhytree | Create a Phylogenetic Tree Object |
| getGenusRepr | Get Genus Representatives |
| getSpeciesRepr | Get Species Representatives |
| ManipStringSet | Manipulate String Set |
| querySpecData | Query Specimen Data |
| rmBadStrings_1 | Remove Mismatched DNA Sequences |
| rmBadStrings_2 | Remove Mismatched DNA Sequences |
| rmBadStrings_3 | Remove Mismatched DNA Sequences |
| savePhytree | Save a Phylogenetic Tree Object |