bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes

Documentation for package ‘bPeaks’ version 1.2

bPeaks-package	bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
baseLineCalc	Function to calculate the average number of reads mapped on each nucleotide in a genome
bPeaks	bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
bPeaksAnalysis	Function to run the entire bPeaks procedure
dataPDR1	ChIP-seq results (IP and control samples) obtained with the transcription factor Pdr1 in yeast Saccharomyces cerevisiae
dataReading	Function to import sequencing results in R
dataSmoothing	Function to smooth sequencing coverage along a chromosome
peakDetection	Peak calling method, i. e. identification of genomic regions with a high density of sequences (reads)
peakDrawing	Function to draw graphical representations of genomic regions detected using bPeaks methodology
peakLocation	Function to locate detected basic peaks (bPeaks) according to predifined chromosomal features
yeastCDS	Annotations of CDS for different yeast species